Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSphere.00743-20

https://doi.org/10.1128/mSphere.00743-20

Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull ( <i>Chroicocephalus novaehollandiae</i> ) Reveals the Acquisition of Multidrug Resistance Plasmids

Cited by: 17
Author(s): Max L. Cummins, Martina L. Sanderson-Smith, Peter Newton, Nicholas Carlile, David N. Phalen, Kimberly Maute, Leigh G. Monahan, Bethany J. Hoye, Steven P. Djordjevic
Published: almost 4 years ago

Software Mentions 10

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggimage
Use Image in 'ggplot2'
Papers that mentioned: 5
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: tidytree
A Tidy Tool for Phylogenetic Tree Data Manipulation
Papers that mentioned: 10
pypi: qcat
Qcat is Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files
Papers that mentioned: 34
pypi: tidytree
manager directories
Papers that mentioned: 10