Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0132783

https://doi.org/10.1371/journal.pone.0132783

Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities

Cited by: 388
Author(s): Mads Albertsen, Søren Michael Karst, Anja Ziegler, Rasmus Hansen Kirkegaard, Per Halkjær Nielsen
Published: over 9 years ago

Software Mentions 11

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: data.table
Extension of 'data.frame'
Papers that mentioned: 33
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggdendro
Create Dendrograms and Tree Diagrams Using 'ggplot2'
Papers that mentioned: 48
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903