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Papers: 10.1371/journal.pone.0132783

https://doi.org/10.1371/journal.pone.0132783

Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities

Cited by: 388
Author(s): Mads Albertsen, Søren Michael Karst, Anja Ziegler, Rasmus Hansen Kirkegaard, Per Halkjær Nielsen
Published: about 11 years ago

Software Mentions 11

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
Very Likely Science (65)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: data.table
Extension of 'data.frame'
Papers that mentioned: 33
Very Likely Science (100)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: ggdendro
Create Dendrograms and Tree Diagrams Using 'ggplot2'
Papers that mentioned: 48
Very Likely Science (77)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
Very Likely Science (75)
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
Very Likely Science (95)
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
Very Likely Science (100)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)