cran: caret | Projects | Ecosyste.ms: Papers

10.1084/jem.20210915

Blood transcriptomics reveal the evolution and resolution of the immune response in tuberculosis
Cited by: 27
Author(s): Olivier Tabone, Raman Verma, Akul Singhania, Probir Chakravarty, William J. Branchett, Christine M. Graham, Jo Lee, Trần Thị Huyền Trang, Frédéric Reynier, Philippe Leissner, Karine Kaiser, Marc Rodrigue, Gerrit Woltmann, Pranabashis Haldar, Anne O’Garra
Software Mentions: 27
Published: about 3 years ago

10.1186/s13073-021-00910-1

Landscape and selection of vaccine epitopes in SARS-CoV-2
Cited by: 21
Author(s): Christof C. Smith, Kelly Olsen, Kaylee M. Gentry, Maria J. Sambade, Wolfgang Beck, Jason Garness, Sarah Entwistle, Caryn Willis, Steven Vensko, Allison Woods, Misha Fini, Brandon Carpenter, Eric D. Routh, Julia Kodysh, Timothy J. O’Donnell, Carsten Haber, Kirsten Heiß, Volker Stadler, Erik Garrison, Adam Sandor, Jenny P.-Y. Ting, Jared Weiss, Krzysztof Krajewski, Oliver C. Grant, Robert J. Woods, Mark T. Heise, Benjamin G. Vincent, Alex Rubinsteyn
Software Mentions: 27
Published: over 3 years ago

10.1186/s13072-016-0095-z

EpiMINE, a computational program for mining epigenomic data
Cited by: 11
Author(s): Sri Ganesh Jammula, Diego Pasini
Software Mentions: 23
Published: about 8 years ago

10.1371/journal.pntd.0009252

Optimising predictive modelling of Ross River virus using meteorological variables
Cited by: 4
Author(s): Iain S. Koolhof, Simon M. Firestone, SS Bettiol, Michael A. Charleston, Katherine B Gibney, Peter J. Neville, Andrew Jardine, Scott Carver
Software Mentions: 23
Published: over 3 years ago

10.1186/s13071-021-04851-x

Data-driven and interpretable machine-learning modeling to explore the fine-scale environmental determinants of malaria vectors biting rates in rural Burkina Faso
Cited by: 9
Author(s): Paul Taconet, Angélique Porciani, Dieudonné Diloma Soma, Karine Mouline, Frédéric Simard, Alphonsine A. Koffi, Cédric Pennetier, Roch K. Dabiré, Morgan Mangeas, Nicolas Moiroux
Software Mentions: 21
Published: over 3 years ago

10.1093/gigascience/giaa026

ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data
Cited by: 13
Author(s): Stephen R. Piccolo, Terry J. Lee, Erica Suh, Kimball T Hill
Software Mentions: 21
Published: over 4 years ago

10.3390/cells8091045

Systematic Assessment of Blood-Borne MicroRNAs Highlights Molecular Profiles of Endurance Sport and Carbohydrate Uptake
Cited by: 12
Author(s): Fabian Kern, Nicole Ludwig, Christina Backes, Esther Maldener, Tobias Fehlmann, Artur Suleymanov, Eckart Meese, Anne Hecksteden, Andreas Keller, Tim Meyer
Software Mentions: 21
Published: about 5 years ago

10.1186/s13059-020-02100-5

Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data
Cited by: 56
Author(s): Nikolaus Fortelny, Christoph Bock
Software Mentions: 20
Published: over 4 years ago

10.18632/aging.203108

Cognitive dedifferentiation as a function of cognitive impairment in the ADNI and MemClin cohorts
Cited by: 2
Author(s): John Wallert, Anna Rennie, Daniel Ferreira, J‐Sebastian Muehlboeck, Lars‐Olof Wahlund, Eric Westman, Urban Ekman
Software Mentions: 20
Published: over 3 years ago

10.1371/journal.pone.0169748

SoilGrids250m: Global gridded soil information based on machine learning
Cited by: 2,126
Author(s): Tomislav Hengl, Jorge Mendes de Jesus, G.B.M. Heuvelink, M. Ruiperez González, Milorad Kilibarda, Aleksandar Blagotić, Wei Shangguan, Marvin N. Wright, Xiaoyuan Geng, Bernhard Bauer-Marschallinger, Mário Guevara, Rodrigo Vargas, R.A. MacMillan, N.H. Batjes, J.G.B. Leenaars, Eloi Ribeiro, Ichsani Wheeler, S. Mantel
Software Mentions: 19
Published: almost 8 years ago

10.3390/ijms21186652

Identification of Gastritis Subtypes by Convolutional Neuronal Networks on Histological Images of Antrum and Corpus Biopsies
Cited by: 15
Author(s): Georg Steinbuß, Katharina Kriegsmann, Mark Kriegsmann
Software Mentions: 19
Published: about 4 years ago

10.3390/plants10020247

Machine Learning Applications and Optimization of Clustering Methods Improve the Selection of Descriptors in Blackberry Germplasm Banks
Cited by: 5
Author(s): Juan Camilo Henao-Rojas, María Gladis Rosero-Alpala, Carolina Ortiz-Muñoz, Carlos Enrique Velásquez-Arroyo, William A. León-Rueda, Joaquín Guillermo Ramírez‐Gil
Software Mentions: 19
Published: almost 4 years ago

10.1093/bioinformatics/btab039

mlr3proba: an R package for machine learning in survival analysis
Cited by: 38
Author(s): Raphael Sonabend, Franz J. Király, Andreas Bender, Bernd Bischl, Michel Lang
Software Mentions: 18
Published: almost 4 years ago

10.1371/journal.pone.0194899

Investigation of the seasonal microbiome of Anopheles coluzzii mosquitoes in Mali
Cited by: 34
Author(s): Benjamin J Krajacich, Diana L. Huestis, Adama Dao, Alpha Seydou Yaro, Moussa Diallo, Asha Krishna, Jianchu Xu, Tovi Lehmann
Software Mentions: 18
Published: over 6 years ago

10.1186/s40168-021-01100-2

Microbiota long-term dynamics and prediction of acute graft-versus-host disease in pediatric allogeneic stem cell transplantation
Cited by: 31
Author(s): Anna Cäcilia Ingham, Katrine Kielsen, Hanne Mordhorst, Marianne Ifversen, Frank Møller Aarestrup, Klaus Müller, Sünje Johanna Pamp
Software Mentions: 18
Published: over 3 years ago

10.3390/ijms21228837

Machine Learning Identifies Robust Matrisome Markers and Regulatory Mechanisms in Cancer
Cited by: 6
Author(s): Anni Kääriäinen, Vilma Pesola, Annalena Dittmann, Juho A. J. Kontio, Jarkko Koivunen, Taina Pihlajaniemi, Valerio Izzi
Software Mentions: 18
Published: almost 4 years ago

10.3389/fvets.2021.620327

Detection of Mycobacterium avium ssp. paratuberculosis in Cultures From Fecal and Tissue Samples Using VOC Analysis and Machine Learning Tools
Cited by: 6
Author(s): Philipp Vitense, Elisa Kasbohm, Anne Klassen, Peter Gierschner, Phillip Trefz, M. Weber, Wolfram Miekisch, Jochen K. Schubert, Petra Möbius, Petra Reinhold, Volkmar Liebscher, Heike Köhler
Software Mentions: 17
Published: almost 4 years ago

10.7717/peerj.5457

Global mapping of potential natural vegetation: an assessment of machine learning algorithms for estimating land potential
Cited by: 84
Author(s): Tomislav Hengl, Markus Walsh, Jonathan Sanderman, Ichsani Wheeler, Sandy P. Harrison, Iain Colin Prentice
Software Mentions: 17
Published: over 6 years ago

10.3390/cancers13133166

High-Risk Clinicopathological and Genetic Features and Outcomes in Patients Receiving Neoadjuvant Radiochemotherapy for Locally Advanced Rectal Cancer
Cited by: 3
Author(s): Sofía Del Carmen, Luis A. Corchete, Cristina Velasco, Julia Sanz, José A. Sánchez Alcázar, José María Sánchez García, Ana Isabel Enríquez Rodríguez, Rosario Vidal-Tocino, A Barrio Rodriguez, Luis Alberto Pérez-Romasanta, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 16
Published: over 3 years ago

10.1371/journal.pntd.0007969

Severity Index for Suspected Arbovirus (SISA): Machine learning for accurate prediction of hospitalization in subjects suspected of arboviral infection
Cited by: 10
Author(s): Rachel Sippy, Daniel F. Farrell, Daniel A. Lichtenstein, Ryan Nightingale, Megan Harris, Joseph Toth, Paris Hantztidiamantis, Nicholas Usher, Cinthya Cueva Aponte, Julio Barzallo Aguilar, Anthony Puthumana, Christina D. Lupone, Timothy P. Endy, Sadie J. Ryan, Anna M. Stewart-Ibarra
Software Mentions: 16
Published: almost 5 years ago

10.3389/fpsyg.2021.627561

Automatic Facial Expression Recognition in Standardized and Non-standardized Emotional Expressions
Cited by: 41
Author(s): Theresa Küntzler, T. Tim A. Höfling, Georg W. Alpers
Software Mentions: 16
Published: over 3 years ago

10.3389/fchem.2021.734132

The “DOLPHINS” Project: A Low-Cost Real-Time Multivariate Process Control From Large Sensor Arrays Providing Sparse Binary Data
Cited by: 1
Author(s): Eugenio Alladio, Marcello Baricco, Vincenzo Leogrande, Renato Pagliari, Fabio Pozzi, Paolo Foglio, Marco Vincenti
Software Mentions: 15
Published: about 3 years ago

10.3389/fneur.2019.01366

Prediction of Early TBI Mortality Using a Machine Learning Approach in a LMIC Population
Cited by: 39
Author(s): Robson Luís Oliveira de Amorim, Louise Makarem Oliveira, Luis Marcelo Malbouisson, Márcia Mitie Nagumo, Marcela Simoes, Leandro Miranda, Edson Bor‐Seng‐Shu, André Beer‐Furlan, Almir Ferreira de Andrade, Andrés M. Rubiano, Manoel Jacobsen Teixeira, Angelos G. Kolias, Wellingson Silva Paiva
Software Mentions: 15
Published: almost 5 years ago

10.1098/rsos.191609

Spatial heterogeneity of the shorebird gastrointestinal microbiome
Cited by: 17
Author(s): Kirsten Grond, Hannah Guilani, Sarah M. Hird
Software Mentions: 15
Published: almost 5 years ago

10.1371/journal.pone.0018850

Multiplexed Immunoassay Panel Identifies Novel CSF Biomarkers for Alzheimer's Disease Diagnosis and Prognosis
Cited by: 199
Author(s): Rebecca Craig‐Schapiro, Max Kühn, Chengjie Xiong, Eve H. Pickering, Jingxia Liu, Thomas P. Misko, Richard J. Perrin, Kelly R. Bales, Holly Soares, Anne M. Fagan, David M. Holtzman
Software Mentions: 15
Published: over 13 years ago

10.21105/joss.03073

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines
Cited by: 22
Author(s): Begüm D. Topçuoğlu, Zena Lapp, Kelly L Sovacool, Evan S. Snitkin, Jenna Wiens, Patrick D. Schloss
Software Mentions: 15
Published: over 3 years ago

10.3389/fmicb.2015.00104

Long-term forest soil warming alters microbial communities in temperate forest soils
Cited by: 237
Author(s): Kristen M. DeAngelis, Grace Pold, Begüm D. Topçuoğlu, Linda T. A. van Diepen, Rebecca Varney, Jeffrey L. Blanchard, Jerry M. Melillo, Serita D. Frey
Software Mentions: 15
Published: almost 10 years ago

10.3390/genes12071044

CircIMPACT: An R Package to Explore Circular RNA Impact on Gene Expression and Pathways
Cited by: 3
Author(s): Alessia Buratin, Enrico Gaffo, Anna Dal Molin, Stefania Bortoluzzi
Software Mentions: 15
Published: over 3 years ago

10.1371/journal.pgen.1009538

Transcriptome-wide investigation of stop codon readthrough in Saccharomyces cerevisiae
Cited by: 16
Author(s): Kotchaphorn Mangkalaphiban, Feng He, Robin Ganesan, Chan Wu, Richard E. Baker, Allan Jacobson
Software Mentions: 15
Published: over 3 years ago

10.1186/s12888-020-02645-6

Depression, anxiety, and burnout among medical students and residents of a medical school in Nepal: a cross-sectional study
Cited by: 66
Author(s): Nishan Babu Pokhrel, Ramesh Khadayat, P Tulachan
Software Mentions: 14
Published: over 4 years ago

10.3389/fonc.2021.560136

Screening of miRNAs as Prognostic Biomarkers for Colon Adenocarcinoma and Biological Function Analysis of Their Target Genes
Cited by: 2
Author(s): Guoliang Zheng, Guojun Zhang, Yan Zhao, Zhichao Zheng
Software Mentions: 14
Published: over 3 years ago

10.1371/journal.pone.0243467

Predicting self-harm within six months after initial presentation to youth mental health services: A machine learning study
Cited by: 16
Author(s): Frank Iorfino, Nicholas Ho, Joanne S. Carpenter, Shane Cross, Tracey A Davenport, Daniel F. Hermens, Hannah Yee, Alissa Nichles, Natalia Zmicerevska, Adam J. Guastella, Elizabeth Scott, Ian B. Hickie
Software Mentions: 14
Published: almost 4 years ago

10.3389/fgene.2021.689406

Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing
Cited by: 26
Author(s): Júber Herrera-Uribe, Jayne E Wiarda, Sathesh K Sivasankaran, Lance Daharsh, Haibo Li, Kristen A Byrne, Timothy P. L. Smith, Joan K. Lunney, Crystal L. Loving, Christopher K. Tuggle
Software Mentions: 14
Published: over 3 years ago

10.1007/s15010-021-01656-z

Prediction of COVID-19 deterioration in high-risk patients at diagnosis: an early warning score for advanced COVID-19 developed by machine learning
Cited by: 16
Author(s): Carolin E. M. Jakob, Ujjwal Mukund Mahajan, Marcus Oswald, Melanie Stecher, Maximilian Schons, Julia Mayerle, Siegbert Rieg, Mathias W. Pletz, Uta Merle, Kai Wille, Stefan Borgmann, Christoph D. Spinner, Sebastian Dolff, Clemens Scherer, Lisa Pilgram, Maria Madeleine Rüthrich, Frank Hanses, Martin Hower, Richard Strauß, Steffen Maßberg, Ahmet Er, Norma Jung, Jörg Janne Vehreschild, Hans Stubbe, Lukas Tometten, Rainer König, Lukas Tometten, Siegbert Rieg, Uta Merle, Kai Wille, Stefan Borgmann, Christoph D. Spinner, Sebastian Dolff, Maria Madeleine Rüthrich, Frank Hanses, Martin Hower, Richard Strauß, Murat Akova, Norma Jung, Michael von Bergwelt‐Baildon, Maria J. G. T. Vehreschild, Beate Grüner, Martina Haselberger, Nora Isberner, Christiane Piepel, Kerstin Hellwig, Dominic Rauschning, Lukas Eberwein, Björn Jensen, Claudia Raichle, Gabriele Müller-Jörger, Sven Stieglitz, Thomas Kratz, Christian Degenhardt, Anette Friedrichs, Robert Bals, Susanne Rüger, Katja de With, Katja Rothfuss, Siri Goepel, Jacob Nattermann, Sabine Jordan, Jessica Rüddel, Janina Trauth, Gernot Beutel, Özlem Altuntaş Aydın, Milena Milovanovic, Michael Doll, Jörg Janne Vehreschild, Lisa Pilgram, Melanie Stecher, Carolin E. M. Jakob, Maximilian Schons, Annika Y. Claßen, Sandra Fuhrmann, Susana Nunes de Miranda, Bernd Franke, Nick Schulze, Fabian Praßer, Martin Lablans
Software Mentions: 14
Published: over 3 years ago

10.1371/journal.pcbi.1005158

Machine Learning for Characterization of Insect Vector Feeding
Cited by: 25
Author(s): Denis S. Willett, Justin George, Nora S. Willett, Lukasz L. Stelinski, Stephen L. Lapointe
Software Mentions: 14
Published: about 8 years ago

10.1038/s41396-020-00798-6

Mucin-derived O-glycans supplemented to diet mitigate diverse microbiota perturbations
Cited by: 48
Author(s): Kali M. Pruss, Ángela Marcobal, Audrey Southwick, Dylan Dahan, Sam Smits, Jessica A. Ferreyra, Steven K. Higginbottom, Erica D. Sonnenburg, Purna C. Kashyap, Biswa Choudhury, Lars Bode, Justin L. Sonnenburg
Software Mentions: 14
Published: about 4 years ago

10.3389/fbioe.2021.614324

One-Time Optimization of Advanced T Cell Culture Media Using a Machine Learning Pipeline
Cited by: 9
Author(s): Paul Grzesik, Sebastian C. Warth
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pone.0199277

Predictive performance of six mortality risk scores and the development of a novel model in a prospective cohort of patients undergoing valve surgery secondary to rheumatic fever
Cited by: 13
Author(s): Omar Asdrúbal Vilca Mejía, Manuel J. Antunes, Maxim Goncharov, Luís Alberto Oliveira Dallan, Elinthon Tavares Veronese, Gisele Aparecida Lapenna, Luiz Augusto Ferreira Lisboa, Carlos Manuel de Almeida Brandão, Jorge P. Zubelli, Flávio Tarasoutchi, Pablo Maria Alberto Pomerantzeff, Fábio Biscegli Jatene
Software Mentions: 13
Published: over 6 years ago

10.3390/ijms22031075

A Novel Epigenetic Machine Learning Model to Define Risk of Progression for Hepatocellular Carcinoma Patients
Cited by: 7
Author(s): Luca Bedon, Michele Dal Bo, Monica Mossenta, Davide Busato, Giuseppe Toffoli, Maurizio Polano
Software Mentions: 13
Published: almost 4 years ago

10.1007/s10875-020-00908-1

Targeted Proteomics Reveals Inflammatory Pathways that Classify Immune Dysregulation in Common Variable Immunodeficiency
Cited by: 13
Author(s): Roos-Marijn Berbers, Julia Drylewicz, Pauline M. Ellerbroek, Joris M. van Montfrans, Virgil A. S. H. Dalm, P. Martin van Hagen, Baerbel Keller, Klaus Warnatz, Annick van de Ven, J.M. van Laar, Stefan Nierkens, Helen L. Leavis
Software Mentions: 13
Published: about 4 years ago

10.3390/ijms21134674

The Inflammasome Adaptor Protein ASC in Mild Cognitive Impairment and Alzheimer’s Disease
Cited by: 37
Author(s): Xavier O. Scott, Marisa E. Stephens, Marie C. Desir, W. Dalton Dietrich, Robert W. Keane, Juan Pablo de Rivero Vaccari
Software Mentions: 13
Published: over 4 years ago

10.2196/mental.9946

Predicting Caller Type From a Mental Health and Well-Being Helpline: Analysis of Call Log Data
Cited by: 9
Author(s): Alexander Grigorash, Siobhan O’Neill, Raymond Bond, Colette Ramsey, Chérie Armour, Maurice Mulvenna
Software Mentions: 13
Published: over 6 years ago

10.1002/jgh3.12451

Presence and type of decompensation affects outcomes in autoimmune hepatitis upon treatment with corticosteroids
Cited by: 1
Author(s): Sanchit Sharma, Samagra Agarwal, Kanica Kaushal, Abhinav Anand, Deepak Gunjan, Rajni Yadav, Sanchit Sharma
Software Mentions: 13
Published: about 4 years ago

10.3389/fcimb.2021.688256

Machine Learning Uses Chemo-Transcriptomic Profiles to Stratify Antimalarial Compounds With Similar Mode of Action
Cited by: 1
Author(s): Ashleigh van Heerden, Roelof van Wyk, Lyn-Marié Birkholtz
Software Mentions: 13
Published: over 3 years ago

10.3389/fpls.2021.633651

Improving Wheat Yield Prediction Using Secondary Traits and High-Density Phenotyping Under Heat-Stressed Environments
Cited by: 6
Author(s): Mohammad Zillur Rahman, Jared Crain, Atena Haghighattalab, Ravi P. Singh, Jesse Poland
Software Mentions: 13
Published: about 3 years ago

10.1186/s12919-016-0015-z

Analysis of gene expression to predict dynamics of future hypertension incidence in type 2 diabetic patients
Cited by: 8
Author(s): Piotr Radkowski, Gracjan Wątor, Jan Skupień, Anna Bogdali, Paweł Wołkow
Software Mentions: 12
Published: about 8 years ago

10.3390/jcm10184071

Diagnostic and Prognostic Potential of MiR-379/656 MicroRNA Cluster in Molecular Subtypes of Breast Cancer
Cited by: 2
Author(s): Megha Lal, Asgar Hussain Ansari, Anurag Agrawal, Arijit Mukhopadhyay
Software Mentions: 12
Published: about 3 years ago

10.3389/fonc.2020.596822

Predictive Model and Precaution for Oral Mucositis During Chemo-Radiotherapy in Nasopharyngeal Carcinoma Patients
Cited by: 10
Author(s): Peijing Li, Kaixin Li, Tengchuan Jin, Hua Lin, Jun Fang, Shengchun Yang, Wei‐Chih Shen, Jia Chen, Jiang Zhang, Xiaozhong Chen, Ming Chen, Yuanyuan Chen
Software Mentions: 12
Published: about 4 years ago

10.1186/s12911-017-0500-y

Predicting two-year survival versus non-survival after first myocardial infarction using machine learning and Swedish national register data
Cited by: 53
Author(s): John Wallert, Mattia Tomasoni, Guy Madison, Claes Held
Software Mentions: 12
Published: over 7 years ago

10.1371/journal.pone.0197176

Investigation of protein quaternary structure via stoichiometry and symmetry ınformation
Cited by: 12
Author(s): Selçuk Korkmaz, José M. Duarte, Andreas Prlić, Dinçer Göksülük, Gökmen Zararsız, Osman Saraçbaşı, S.K. Burley, Peter W. Rose
Software Mentions: 12
Published: over 6 years ago

10.1371/journal.pone.0244350

Knowledge, attitudes, and practices toward COVID-19 among university students in Japan and associated factors: An online cross-sectional survey
Cited by: 82
Author(s): Asuka Hatabu, Xinhua Mao, Yi Zhou, Norihito Kawashita, Zheng Wen, Masao Ueda, Tatsuya Takagi, Yinbao Tian
Software Mentions: 12
Published: almost 4 years ago

10.1186/s40560-021-00531-1

Development and validation of an online model to predict critical COVID-19 with immune-inflammatory parameters
Cited by: 7
Author(s): Yue Gao, Lingxi Chen, Jianhua Chi, Shaoqing Zeng, Xikang Feng, Huayi Li, Dan Liŭ, Xiang Feng, Siyuan Wang, Ya Wang, Rui Yu, Yuan Yuan, Sen Xu, Chunrui Li, Wei Zhang, Shuai Cheng Li, Qinglei Gao
Software Mentions: 12
Published: almost 4 years ago

10.1007/s00429-018-1628-y

Diffusion MRI-based cortical connectome reconstruction: dependency on tractography procedures and neuroanatomical characteristics
Cited by: 61
Author(s): Michel R.T. Sinke, Willem M. Otte, Daan Christiaens, Oliver Schmitt, Alexander Leemans, Annette van der Toorn, R. Angela Sarabdjitsingh, Marian Joëls, Rick M. Dijkhuizen
Software Mentions: 12
Published: almost 7 years ago

10.1186/s40168-020-0793-4

Separating the signal from the noise in metagenomic cell-free DNA sequencing
Cited by: 26
Author(s): Philip Burnham, Nardhy Gómez-López, Michael Heyang, Alexandre Pellan Cheng, Joan Sesing Lenz, Darshana Dadhania, John Richard Lee, Manikkam Suthanthiran, Roberto Romero, Iwijn De Vlaminck
Software Mentions: 12
Published: almost 5 years ago

10.3390/metabo7020030

Evaluation of Classifier Performance for Multiclass Phenotype Discrimination in Untargeted Metabolomics
Cited by: 33
Author(s): Patrick J. Trainor, Andrew P. DeFilippis, N. Shesh
Software Mentions: 12
Published: over 7 years ago

10.3389/fimmu.2020.01659

Conventional and Computational Flow Cytometry Analyses Reveal Sustained Human Intrathymic T Cell Development From Birth Until Puberty
Cited by: 2
Author(s): Marieke Lavaert, Brecht Valcke, Bart Vandekerckhove, Georges Leclercq, Kai Ling Liang, Tom Taghon
Software Mentions: 12
Published: over 4 years ago

10.1371/journal.pone.0195065

Dengue forecasting in São Paulo city with generalized additive models, artificial neural networks and seasonal autoregressive integrated moving average models
Cited by: 48
Author(s): Oswaldo Santos Baquero, Lidia Maria Reis Santana, Francisco Chiaravalloti Neto
Software Mentions: 12
Published: over 6 years ago

10.3390/plants10050879

Multivariate Analysis of Morpho-Physiological Traits Reveals Differential Drought Tolerance Potential of Bread Wheat Genotypes at the Seedling Stage
Cited by: 26
Author(s): Mohammed Mohi-Ud-Din, Md. Alamgir Hossain, Md. Motiar Rohman, Md. Nesar Uddin, Md. Sabibul Haque, Jalal Uddin Ahmed, Akbar Hossain, Mohamed M. Hassan, Mohammad Golam Mostofa
Software Mentions: 12
Published: over 3 years ago

10.1038/srep26451

Glycosyltransferase Gene Expression Profiles Classify Cancer Types and Propose Prognostic Subtypes
Cited by: 52
Author(s): Jahanshah Ashkani, Kevin J. Naidoo
Software Mentions: 12
Published: over 8 years ago

10.1002/cam4.2786

FOLFOX treatment response prediction in metastatic or recurrent colorectal cancer patients via machine learning algorithms
Cited by: 24
Author(s): Wei Lu, Dongliang Fu, Xianglong Kong, Zhiheng Huang, Maxwell Hwang, Yaowu Zhu, Liubo Chen, Kai Jiang, Xinlin Li, Yihua Wu, Jun Li, Ying Yuan, Kefeng Ding
Software Mentions: 12
Published: almost 5 years ago

10.1007/s00216-020-03093-7

Repeated double cross-validation applied to the PCA-LDA classification of SERS spectra: a case study with serum samples from hepatocellular carcinoma patients
Cited by: 23
Author(s): Elisa Gurian, Alessia Di Silvestre, Elisa Mitri, Devis Pascut, Claudio Tiribelli, Mauro Giuffrè, Lory Saveria Crocè, Valter Sergo, Alois Bonifacio
Software Mentions: 12
Published: almost 4 years ago

10.3390/ani11040961

Grumpy Dogs Are Smart Learners—The Association between Dog–Owner Relationship and Dogs’ Performance in a Social Learning Task
Cited by: 8
Author(s): Péter Pongrácz, Gabriella Rieger, Kata Vékony
Software Mentions: 11
Published: over 3 years ago

10.3390/cancers12123800

Dynamics of Fecal Microbiota with and without Invasive Cervical Cancer and Its Application in Early Diagnosis
Cited by: 14
Author(s): Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae‐Ho Shin
Software Mentions: 11
Published: almost 4 years ago

10.2196/10754

Predicting Adherence to Internet-Delivered Psychotherapy for Symptoms of Depression and Anxiety After Myocardial Infarction: Machine Learning Insights From the U-CARE Heart Randomized Controlled Trial
Cited by: 44
Author(s): John Wallert, Emelie Gustafson, Claes Held, Guy Madison, Fredrika Norlund, Louise von Essén, Erik Olsson
Software Mentions: 11
Published: about 6 years ago

10.3389/fpls.2020.588856

So Closely Related and Yet So Different: Strong Contrasts Between the Evolutionary Histories of Species of the Cardamine pratensis Polyploid Complex in Central Europe
Cited by: 16
Author(s): Andrea Melichárková, Marek Šlenker, Judita Zozomová‐Lihová, Katarína Skokanová, Barbora Šingliarová, Tatiana Kačmárová, Michaela Caboňová, Matúš Kempa, Gabriela Šrámková, Terezie Mandáková, Martin Lysák, Marek Svitok, Lenka Mártonfiová, Karol Marhold
Software Mentions: 11
Published: almost 4 years ago

10.1186/s40168-020-00805-0

Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed
Cited by: 80
Author(s): Hyun Kim, Kiseok Keith Lee, Jongbum Jeon, William Harris, Yong-Hwan Lee
Software Mentions: 11
Published: almost 5 years ago

10.7554/eLife.65372

Image3C, a multimodal image-based and label-independent integrative method for single-cell analysis
Cited by: 6
Author(s): Alice Accorsi, Andrew Box, Robert Peuß, Christopher J. Wood, Alejandro Sánchez Alvarado, Nicolas Rohner
Software Mentions: 11
Published: over 3 years ago

10.1186/s12879-019-4585-z

Development of a high number, high coverage dog rabies vaccination programme in Sri Lanka
Cited by: 8
Author(s): Carlos Sánchez-Soriano, Andrew D Gibson, Luke Gamble, Jordana L. Burdon Bailey, Samantha Green, Mark Green, Barend M. deC. Bronsvoort, Ian Handel, Richard J. Mellanby, Stella Mazeri
Software Mentions: 11
Published: about 5 years ago

10.3390/foods10010143

Intramuscular Fat Prediction Using Color and Image Analysis of Bísaro Pork Breed
Cited by: 7
Author(s): Alfredo Teixeira, Severiano Silva, Marianne Hasse, José Almeida, Luís G. Dias
Software Mentions: 11
Published: almost 4 years ago

10.1128/mSphere.00481-19

Biogeographic Patterns in Members of Globally Distributed and Dominant Taxa Found in Port Microbial Communities
Cited by: 15
Author(s): Ryan B. Ghannam, Laura G. Schaerer, Timothy Butler, Stephen M. Techtmann
Software Mentions: 11
Published: over 4 years ago

10.3389/fvets.2017.00002

Using Machine Learning to Predict Swine Movements within a Regional Program to Improve Control of Infectious Diseases in the US
Cited by: 28
Author(s): Pablo Valdes–Donoso, Kimberly VanderWaal, Lovell S. Jarvis, Spencer Wayne, Andres Pérez
Software Mentions: 11
Published: almost 8 years ago

10.3390/diagnostics11081517

Prediction Model for Tumor Budding Status Using the Radiomic Features of F-18 Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography in Cervical Cancer
Cited by: 5
Author(s): Gun Oh Chong, Shin‐Hyung Park, Shin Young Jeong, Su Jeong Kim, Nora Jee-Young Park, Yoon Hee Lee, Sang‐Woo Lee, Dae Gy Hong, Ji Young Park, Hyung Soo Han
Software Mentions: 11
Published: about 3 years ago

10.1016/j.scitotenv.2018.08.122

Prediction of bioconcentration factors in fish and invertebrates using machine learning
Cited by: 56
Author(s): Thomas H. Miller, Matteo D. Gallidabino, James I. MacRae, Stewart F. Owen, Nicolas R. Bury, Leon Barron
Software Mentions: 11
Published: almost 6 years ago

10.1186/1476-069X-13-57

The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees
Cited by: 45
Author(s): Erik Lampa, Lars Lind, P. Monica Lind, Anna Bornefalk-Hermansson
Software Mentions: 11
Published: over 10 years ago

10.1016/j.mex.2018.07.003

A practical method to control spatiotemporal confounding in environmental impact studies
Cited by: 4
Author(s): Rezvan Hatami
Software Mentions: 11
Published: almost 7 years ago

10.1186/s12885-021-08498-w

Prediction of the risk of developing hepatocellular carcinoma in health screening examinees: a Korean cohort study
Cited by: 7
Author(s): Chansik An, Jong Won Choi, Hyung Soon Lee, Hyunsun Lim, Seok Jong Ryu, Jung Hyun Chang, Hyun Cheol Oh
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0239378

The path to international medals: A supervised machine learning approach to explore the impact of coach-led sport-specific and non-specific practice
Cited by: 7
Author(s): Michael Barth, Arne Güllich, Christian Raschner, Eike Emrich
Software Mentions: 10
Published: about 4 years ago

10.1371/journal.pone.0238160

Diagnostic and prognostic value of hematological and immunological markers in COVID-19 infection: A meta-analysis of 6320 patients
Cited by: 138
Author(s): Rami M. Elshazli, Eman A. Toraih, Abdelaziz Elgaml, Mohammed El‐Mowafy, Mohamed El-Mesery, Mohamed N. Amin, Mohammad Hussein, Mary Killackey, Manal S. Fawzy, Emad Kandil
Software Mentions: 10
Published: over 4 years ago

10.34133/2020/8954085

Machine Learning-Based Presymptomatic Detection of Rice Sheath Blight Using Spectral Profiles
Cited by: 23
Author(s): Anna O. Conrad, Wei Li, Da-Young Lee, Guo‐Liang Wang, Luis E. Rodriguez‐Saona, Pierluigi Bonello
Software Mentions: 10
Published: almost 5 years ago

10.1186/s13321-015-0094-2

RRegrs: an R package for computer-aided model selection with multiple regression models
Cited by: 40
Author(s): Georgia Tsiliki, Cristian R. Munteanu, José A. Seoane, Carlos Fernández-Lozano, Haralambos Sarimveis, Egon Willighagen
Software Mentions: 10
Published: about 9 years ago

10.3389/fonc.2020.01196

Radiomics Analysis on Multiphase Contrast-Enhanced CT: A Survival Prediction Tool in Patients With Hepatocellular Carcinoma Undergoing Transarterial Chemoembolization
Cited by: 28
Author(s): Xiang-Pan Meng, Yuancheng Wang, Shenghong Ju, Chun-Qiang Lu, Bin Zhong, Ni Chen, Qi Zhang, Qian Yu, Jingyi Xu, JianSong Ji, Xiuming Zhang, Tianyu Tang, Guanyu Yang, Ziteng Zhao
Software Mentions: 10
Published: over 4 years ago

10.1097/MD.0000000000026068

MiRNA-based model for predicting the TMB level in colon adenocarcinoma based on a LASSO logistic regression method
Cited by: 1
Author(s): Zhengtian Li, Lingling Jiang, Rong Zhao, Jun Huang, Weibo Yang, Zhenpei Wen, Bo Zhang, Gang Du
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0194085

Predicting urinary tract infections in the emergency department with machine learning
Cited by: 112
Author(s): Richard A. Taylor, Christopher L. Moore, Kei‐Hoi Cheung, Cynthia Brandt
Software Mentions: 10
Published: over 6 years ago

10.1371/journal.pone.0134679

Prediction of Peptide and Protein Propensity for Amyloid Formation
Cited by: 50
Author(s): Carlos Família, Sarah Rachel Dennison, Alexandre Quintas, David A. Phoenix
Software Mentions: 10
Published: over 9 years ago

10.3389/fnagi.2018.00144

Differentiating Patients at the Memory Clinic With Simple Reaction Time Variables: A Predictive Modeling Approach Using Support Vector Machines and Bayesian Optimization
Cited by: 9
Author(s): John Wallert, Eric Westman, Johnny Ulinder, Mathilde Annerstedt, Beata Terzis, Urban Ekman
Software Mentions: 10
Published: over 6 years ago

10.1371/journal.pntd.0008940

Using host traits to predict reservoir host species of rabies virus
Cited by: 27
Author(s): Katherine E. L. Worsley‐Tonks, Luis E. Escobar, Roman Biek, Mariana Castaneda-Guzman, Meggan E. Craft, Daniel G. Streicker, Lauren A. White, Nicholas M. Fountain-Jones
Software Mentions: 10
Published: almost 4 years ago

10.1155/2020/6539398

Distinguishing Kawasaki Disease from Febrile Infectious Disease Using Gene Pair Signatures
Cited by: 1
Author(s): Jiayong Zhong, Qingsheng Huang, Yanfei Wang, Huan Gao, Hongling Jia, Jun Fan, Huiying Liang
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-021-81110-0

G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes
Cited by: 9
Author(s): Françoise Le Borgne, Arthur Chatton, Maxime Léger, Rémi Lenain, Yohann Foucher
Software Mentions: 10
Published: almost 4 years ago

10.1038/s41598-020-64095-0

Snapshots of human anatomy, locomotion, and behavior from Late Pleistocene footprints at Engare Sero, Tanzania
Cited by: 17
Author(s): Kevin G. Hatala, William E. H. Harcourt‐Smith, Adam D. Gordon, Brian W. Zimmer, Brian G. Richmond, Briana Pobiner, David J. Green, Adam Metallo, Vince Rossi, Cynthia M. Liutkus-Pierce
Software Mentions: 10
Published: over 4 years ago

10.1186/s13040-021-00235-0

Data analytics and clinical feature ranking of medical records of patients with sepsis
Cited by: 11
Author(s): Davide Chicco, Luca Oneto
Software Mentions: 10
Published: almost 4 years ago

10.3390/diagnostics11071137

A Novel Combination of Blood Biomarkers and Clinical Stroke Scales Facilitates Detection of Large Vessel Occlusion Ischemic Strokes
Cited by: 6
Author(s): Edoardo Gaude, Barbara Nogueira, Marcos Ladreda Mochales, Sheila V. Graham, Sarah Smith, Lisa Shaw, Sara Graziadio, Gonzalo Ladreda Mochales, Philip Sloan, Joshua D. Bernstock, Shashank Shekhar, Toby Gropen, Chris Price
Software Mentions: 10
Published: over 3 years ago

10.1038/s41598-017-05505-8

Machine Learning Algorithms for Risk Prediction of Severe Hand-Foot-Mouth Disease in Children
Cited by: 15
Author(s): Bin Zhang, Xiang Wan, Fu Ouyang, Yu Dong, Dehui Luo, Jing Liu, Long Liang, Wen Bo Chen, Xiao Luo, Xiao Mo, Lu Zhang, Wen Hui Huang, Shu Fang Pei, Bao Liang Guo, Chun Liang, Long Zhou, Shui Xing Zhang
Software Mentions: 10
Published: over 7 years ago

10.1371/journal.pone.0249102

The rodent object-in-context task: A systematic review and meta-analysis of important variables
Cited by: 5
Author(s): Milou S. C. Sep, Marijn Vellinga, R. Angela Sarabdjitsingh, Marian Joëls
Software Mentions: 9
Published: over 3 years ago

10.1186/s12859-020-03703-2

SQMtools: automated processing and visual analysis of ’omics data with R and anvi’o
Cited by: 25
Author(s): Fernando Puente-Sánchez, Natalia García-García, Javier Tamames
Software Mentions: 9
Published: over 4 years ago

10.1371/journal.pone.0254356

Endpoint PCR coupled with capillary electrophoresis (celPCR) provides sensitive and quantitative measures of environmental DNA in singleplex and multiplex reactions
Cited by: 7
Author(s): Bettina Thalinger, Yannick Pütz, Michael Traugott
Software Mentions: 9
Published: over 3 years ago

10.3389/fonc.2021.616976

A Nomogram for Preoperative Estimation of Microvascular Invasion Risk in Hepatocellular Carcinoma: Single-Center Analyses With Internal Validation
Cited by: 5
Author(s): Jiarui Yang, Shuguang Zhu, Juanjuan Yong, Xia Long, Xiangjun Qian, Jiawei Yang, Xueqiao Hu, Yuxuan Li, Chusi Wang, Wenguang Peng, Lei Zhang, Meihai Deng, Weidong Pan
Software Mentions: 9
Published: over 3 years ago

10.1001/jamanetworkopen.2019.9812

Association of Severe Hyperoxemia Events and Mortality Among Patients Admitted to a Pediatric Intensive Care Unit
Cited by: 21
Author(s): Sriram Ramgopal, Cameron Dezfulian, Robert W. Hickey, Alicia K. Au, Shekhar T. Venkataraman, Robert S. B. Clark, Christopher M. Horvat
Software Mentions: 9
Published: over 5 years ago

10.3389/fmicb.2018.02571

PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method
Cited by: 97
Author(s): Yi Xiong, Qiankun Wang, Junchen Yang, Xiaolei Zhu, Dong‐Qing Wei
Software Mentions: 9
Published: about 6 years ago

10.3390/molecules25071576

Model Optimization for the Prediction of Red Wine Phenolic Compounds Using Ultraviolet–Visible Spectra
Cited by: 4
Author(s): Chris Beaver, Thomas S. Collins, James F. Harbertson
Software Mentions: 9
Published: over 4 years ago

10.18632/aging.101795

Predicting chromosome 1p/19q codeletion by RNA expression profile: a comparison of current prediction models
Cited by: 4
Author(s): Zhiliang Wang, Zheng Zhao, Zheng Wang, Chuanbao Zhang, Tao Jiang
Software Mentions: 9
Published: almost 6 years ago

Projects: cran: caret

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