Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fgene.2021.689406

https://doi.org/10.3389/fgene.2021.689406

Cited by: 26
Author(s): Júber Herrera-Uribe, Jayne E Wiarda, Sathesh K Sivasankaran, Lance Daharsh, Haibo Li, Kristen A Byrne, Timothy P. L. Smith, Joan K. Lunney, Crystal L. Loving, Christopher K. Tuggle
Published: almost 3 years ago

Software Mentions 14

bioconductor: AUCell

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Papers that mentioned: 45

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: DropletUtils

Utilities for Handling Single-Cell Droplet Data
Papers that mentioned: 14

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: NanoStringDiff

Differential Expression Analysis of NanoString nCounter Data
Papers that mentioned: 22

bioconductor: sva

Surrogate Variable Analysis
Papers that mentioned: 511

cran: caret

Classification and Regression Training
Papers that mentioned: 630

cran: lme4

Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: ranger

A Fast Implementation of Random Forests
Papers that mentioned: 91

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: SoupX

Single Cell mRNA Soup eXterminator
Papers that mentioned: 17

pypi: caret

A Python Interface to Asterisk
Papers that mentioned: 630

pypi: ranger

A Python package for the manipulation of Range objects
Papers that mentioned: 91