Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: NanoStringDiff

https://packages.ecosyste.ms/registries/bioconductor.org/packages/NanoStringDiff

Differential Expression Analysis of NanoString nCounter Data
1 version
Latest release: about 1 year ago
1 dependent package
14,994 downloads total

Papers Mentioning NanoStringDiff 22

10.3389/fgene.2021.689406

Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing
Cited by: 26
Author(s): Júber Herrera-Uribe, Jayne E Wiarda, Sathesh K Sivasankaran, Lance Daharsh, Haibo Li, Kristen A Byrne, Timothy P. L. Smith, Joan K. Lunney, Crystal L. Loving, Christopher K. Tuggle
Software Mentions: 14
Published: over 3 years ago

10.3390/cancers12030756

Analysis of Dual Class I Histone Deacetylase and Lysine Demethylase Inhibitor Domatinostat (4SC-202) on Growth and Cellular and Genomic Landscape of Atypical Teratoid/Rhabdoid
Cited by: 23
Author(s): Mariah M. Hoffman, Jessica S. Zylla, Somshuvra Bhattacharya, Kristin Calar, Timothy W. Hartman, Ratan D. Bhardwaj, W. Keith Miskimins, Pilar de la Puente, Etienne Z. Gnimpieba, Shanta M. Messerli
Software Mentions: 8
Published: almost 5 years ago

10.1136/jitc-2021-002856

IL-6 contributes to metastatic switch via the differentiation of monocytic-dendritic progenitors into prometastatic immune cells
Cited by: 15
Author(s): Ksenia Magidey-Klein, Tim J. Cooper, Ksenya Kveler, Rachelly Normand, Tongwu Zhang, Michael Timaner, Ziv Raviv, Brian P. James, Roi Gazit, Ze’ev Ronai, Shai S. Shen-Orr, Yuval Shaked
Software Mentions: 6
Published: over 3 years ago

10.3390/cancers12051325

Tumor Cell Associated Hyaluronan-CD44 Signaling Promotes Pro-Tumor Inflammation in Breast Cancer
Cited by: 18
Author(s): Patrice M Witschen, Thomas S. Chaffee, Nicholas J. Brady, Danielle N. Huggins, Todd P. Knutson, Rebecca S. LaRue, Sarah A. Munro, Lyubov Tiegs, James B. McCarthy, Andrew C. Nelson, Kathryn L. Schwertfeger
Software Mentions: 4
Published: over 4 years ago

10.1186/s12917-021-02785-1

Gene expression in tonsils in swine following infection with porcine reproductive and respiratory syndrome virus
Cited by: 12
Author(s): Qian Dong, Joan K. Lunney, Kyu-Sang Lim, Yet Nguyen, Andrew S. Hess, Hamid Beiki, Raymond R. R. Rowland, Kristen Walker, James M. Reecy, Christopher K. Tuggle, Jack C. M. Dekkers
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12859-019-2695-7

VIGLA-M: visual gene expression data analytics
Cited by: 8
Author(s): Ismael Navas‐Delgado, José García-Nieto, Esteban López-Camacho, Maciej Rybiński, Rocío Lavado, Miguel‐Ángel Berciano‐Guerrero, José F. Aldana‐Montes
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-019-6052-z

Pathway activity profiling of growth factor receptor network and stemness pathways differentiates metaplastic breast cancer histological subtypes
Cited by: 16
Author(s): Jasmine A. McQuerry, D. Graham Jenkins, Susan E. Yost, Yuqing Zhang, Daniel Schmolze, W. Evan Johnson, Yuan Yuan, Andrea Bild
Software Mentions: 2
Published: over 5 years ago

10.3390/ph12020050

CDK11 Loss Induces Cell Cycle Dysfunction and Death of BRAF and NRAS Melanoma Cells
Cited by: 10
Author(s): Rehana L. Ahmed, Daniel P. Shaughnessy, Todd P. Knutson, Rachel Isaksson Vogel, Khalil Ahmed, Betsy T. Kren, Janeen H. Trembley
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.710608

Traumatic Brain Injury Induces cGAS Activation and Type I Interferon Signaling in Aged Mice
Cited by: 29
Author(s): James W. Barrett, Susan M. Knoblach, Surajit Bhattacharya, Heather Gordish‐Dressman, Bogdan A. Stoica, David J. Loane
Software Mentions: 2
Published: over 3 years ago

10.1038/srep46239

Little Cigars are More Toxic than Cigarettes and Uniquely Change the Airway Gene and Protein Expression
Cited by: 25
Author(s): Arunava Ghosh, Sabri Abdelwahab, Steven L. Reeber, Boris Reidel, Abigail J. Marklew, Andrew J. Garrison, Shernita Lee, Hong Dang, Amy H. Herring, Gary L. Glish, Mehmet Kesımer, Robert Tarran
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-22142-x

Improved isolation strategies to increase the yield and purity of human urinary exosomes for biomarker discovery
Cited by: 133
Author(s): Ali Hashemi Gheinani, Mike Vögeli, Ulrich Baumgartner, Erik Vassella, Annette Draeger, Fiona C. Burkhard, Katia Monastyrskaya
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-89535-3

Urinary miRNA profiles discriminate between obstruction-induced bladder dysfunction and healthy controls
Cited by: 7
Author(s): Michelle von Siebenthal, Mustafa Besic, Ali Hashemi Gheinani, Akshay Akshay, Salomé Lizun-Platoni, Nadine Kunz, Fiona C. Burkhard, Katia Monastyrskaya
Software Mentions: 2
Published: over 3 years ago

10.7150/thno.49199

Delayed microglial depletion after spinal cord injury reduces chronic inflammation and neurodegeneration in the brain and improves neurological recovery in male mice
Cited by: 77
Author(s): Yun Li, Rodney M. Ritzel, Niaz Khan, Tuoxin Cao, Jialong He, Zhuofan Lei, Jessica Matyas, Boris Sabirzhanov, Simon Liu, Hui Li, Bogdan A. Stoica, David J. Loane, Alan I. Faden, Junfang Wu
Software Mentions: 1
Published: almost 5 years ago

10.2144/fsoa-2020-0159

Co-stimulatory and co-inhibitory immune markers in solid tumors with <i>MET</i> alterations
Cited by: 1
Author(s): Karen L. Reckamp, Jasmine A. McQuerry, Isa Mambetsariev, Rebecca Pharaon, Susan E. Yost, Jeremy Fricke, Tamara Mirzapoiazova, Raju Pillai, Leonidas Arvanitis, Ziad U. Khan, Marwan Fakih, Yuan Yuan, Marianna Koczywas, Erminia Massarelli, Prakash Kulkarni, Sumanta K. Pal, Martin Sattler, Andrea Bild, Ravi Salgia
Software Mentions: 1
Published: almost 4 years ago

10.1002/cam4.3106

Characterization of the immune profile of oral tongue squamous cell carcinomas with advancing disease
Cited by: 19
Author(s): Katie Meehan, Connull Leslie, Michaela Lucas, Angela Jacques, Bob Mirzai, Jormay Lim, Max Bulsara, Yasir Khan, Nicholas C. Wong, Benjamin Solomon, Chady Sader, Peter Friedland, Gisela Mir Arnau, Timothy Semple, Annette Lim
Software Mentions: 1
Published: over 4 years ago

10.1186/s12974-020-02067-x

Acute colitis during chronic experimental traumatic brain injury in mice induces dysautonomia and persistent extraintestinal, systemic, and CNS inflammation with exacerbated neurological deficits
Cited by: 25
Author(s): Marie Hanscom, David J. Loane, Taryn Aubretch, Jenna Leser, Kara Molesworth, Nivedita Hedgekar, Rodney M. Ritzel, Gelareh Abulwerdi, Terez Shea‐Donohue, Alan I. Faden
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-51088-x

Altered metabolic gene expression in the brain of a triprolyl-human amylin transgenic mouse model of type 2 diabetes
Cited by: 3
Author(s): Tina Nie, Shaoping Zhang, Greeshma Vazhoor Amarsingh, Hong Liu, Mark J. McCann, Garth J. S. Cooper
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.24140

Challenges in using liquid biopsies for gene expression profiling
Cited by: 31
Author(s): Tania B. Porras, Pushpinder Kaur, Alexander Ring, Naomi R. Schechter, Julie E. Lang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12943-018-0781-5

miR-19b enhances proliferation and apoptosis resistance via the EGFR signaling pathway by targeting PP2A and BIM in non-small cell lung cancer
Cited by: 68
Author(s): Ulrich Baumgartner, Fabienne Berger, Ali Hashemi Gheinani, Sabrina Sofia Burgener, Katia Monastyrskaya, Erik Vassella
Software Mentions: 1
Published: almost 7 years ago

10.1096/fj.201802524R

Cannabinoid receptor 2 deficiency exacerbates inflammation and neutrophil recruitment
Cited by: 38
Author(s): Theodore S. Kapellos, Lewis Taylor, Alexander Feuerborn, Sophia Valaris, Mumtaz Hussain, G. Ed Rainger, David R. Greaves, Asif Iqbal
Software Mentions: 1
Published: almost 6 years ago

10.3389/fncel.2019.00307

Time-Dependent Changes in Microglia Transcriptional Networks Following Traumatic Brain Injury
Cited by: 51
Author(s): Saef Izzy, Qiong Liu, Fengli Zhou, Sevda Lüle, Limin Wu, Joon Yong Chung, Aliyah Sarro-Schwartz, Alexander Brown-Whalen, Caroline Perner, Suzanne E. Hickman, David L. Kaplan, Nikolaos A. Patsopoulos, Joseph El Khoury, Michael J. Whalen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41375-021-01391-2

Dual targeting of JAK2 and ERK interferes with the myeloproliferative neoplasm clone and enhances therapeutic efficacy
Cited by: 17
Author(s): Šime Brkić, Simona Stivala, Alice Santopolo, Jakub Szybinski, Sarah Jungius, Jakob Passweg, Dimitrios Α. Tsakiris, Stefan Dirnhofer, Gregor Hütter, Katharina Leonards, Heidi E. L. Lischer, Matthias S. Dettmer, Benjamin G. Neel, Ross L. Levine, Sara C. Meyer
Software Mentions: 1
Published: over 3 years ago