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Applications

Experiments

Papers

cran: mlr3
Machine Learning in R - Next Generation
Papers that mentioned: 8
Very Likely Science (100)
cran: BANOVA
Hierarchical Bayesian ANOVA Models
Papers that mentioned: 8
Very Likely Science (85)
bioconductor: FELLA
Interpretation and enrichment for metabolomics data
Papers that mentioned: 8
Very Likely Science (83)
pypi: astra
The Astra Exploit Framework
Papers that mentioned: 8
Very Likely Science (65)
bioconductor: GRENITS
Gene Regulatory Network Inference Using Time Series
Papers that mentioned: 8
Very Likely Science (100)
cran: apt
Asymmetric Price Transmission
Papers that mentioned: 8
Very Likely Science (83)
pypi: spider
Papers that mentioned: 8
Unlikely Science (0)
bioconductor: clipper
Gene Set Analysis Exploiting Pathway Topology
Papers that mentioned: 8
Very Likely Science (85)
cran: multicon
Multivariate Constructs
Papers that mentioned: 8
Very Likely Science (85)
cran: hdrcde
Highest Density Regions and Conditional Density Estimation
Papers that mentioned: 8
Very Likely Science (100)
cran: GWmodel
Geographically-Weighted Models
Papers that mentioned: 8
Very Likely Science (83)
bioconductor: Metab
Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.
Papers that mentioned: 8
Likely Science (43)
cran: imputeLCMD
A Collection of Methods for Left-Censored Missing Data Imputation
Papers that mentioned: 8
Very Likely Science (75)
cran: Factoshiny
Perform Factorial Analysis from 'FactoMineR' with a Shiny Application
Papers that mentioned: 8
Very Likely Science (85)
cran: survC1
C-Statistics for Risk Prediction Models with Censored Survival Data
Papers that mentioned: 8
Very Likely Science (93)
cran: BGGE
Bayesian Genomic Linear Models Applied to GE Genome Selection
Papers that mentioned: 8
Very Likely Science (85)
bioconductor: IMMAN
Interlog protein network reconstruction by Mapping and Mining ANalysis
Papers that mentioned: 8
Very Likely Science (100)
cran: nimble
MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Papers that mentioned: 8
Very Likely Science (100)
cran: basicTrendline
Papers that mentioned: 8
Unlikely Science (0)
pypi: ace
Non-parametric multivariate regressions by Alternating Conditional Expectations
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: IHW
Independent Hypothesis Weighting
Papers that mentioned: 8
Very Likely Science (75)
bioconductor: NormalyzerDE
Evaluation of normalization methods and calculation of differential expression analysis statistics
Papers that mentioned: 8
Very Likely Science (100)
cran: expert
Papers that mentioned: 8
Unlikely Science (0)
cran: crqa
Unidimensional and Multidimensional Methods for Recurrence Quantification Analysis
Papers that mentioned: 8
Very Likely Science (85)
bioconductor: Harshlight
A "corrective make-up" program for microarray chips
Papers that mentioned: 8
Very Likely Science (100)
cran: huge
High-Dimensional Undirected Graph Estimation
Papers that mentioned: 8
Very Likely Science (75)
cran: cli
Helpers for Developing Command Line Interfaces
Papers that mentioned: 8
Very Likely Science (75)
pypi: randomizer
Liberty for generate random data.
Papers that mentioned: 8
Very Likely Science (65)
cran: gtsummary
Presentation-Ready Data Summary and Analytic Result Tables
Papers that mentioned: 8
Very Likely Science (100)
pypi: FCT
Basic Library for Viewing Radio Images
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: Maaslin2
"Multivariable Association Discovery in Population-scale Meta-omics Studies"
Papers that mentioned: 8
Very Likely Science (90)
bioconductor: CSSP
ChIP-Seq Statistical Power
Papers that mentioned: 8
Very Likely Science (100)
cran: c3net
Inferring Large-Scale Gene Networks with C3NET
Papers that mentioned: 8
Very Likely Science (85)
cran: iRF
Papers that mentioned: 8
Unlikely Science (0)
pypi: systematic
Sysadmin utility classes and scripts
Papers that mentioned: 8
Likely Science (40)
pypi: picamera
A pure Python interface for the Raspberry Pi camera module.
Papers that mentioned: 8
Very Likely Science (80)
pypi: pidgin
Conventions for writing code in the notebook.
Papers that mentioned: 8
Very Likely Science (65)
pypi: Tabby
Reads tabular data and turns it into python dicts
Papers that mentioned: 8
Very Likely Science (65)
pypi: phydms
Phylogenetic analyses informed by deep mutational scanning data.
Papers that mentioned: 8
Very Likely Science (100)
cran: wavethresh
Wavelets Statistics and Transforms
Papers that mentioned: 8
Very Likely Science (68)
pypi: linear
A straightforward package for linear regression with Gaussian priors.
Papers that mentioned: 8
Very Likely Science (90)
pypi: tim
TIM: Timed Iteration Monitor
Papers that mentioned: 8
Very Likely Science (65)
pypi: radiator
Electron propagation in the intergalactic medium
Papers that mentioned: 8
Very Likely Science (85)
pypi: OSR
Automated DJ/Announcer
Papers that mentioned: 8
Very Likely Science (65)
pypi: us
US state meta information and other fun stuff
Papers that mentioned: 8
Very Likely Science (80)
pypi: sms
SMS sending and receiving with enfora gsm modems
Papers that mentioned: 8
Very Likely Science (65)
pypi: util
Functions that should be in the Python standard library.
Papers that mentioned: 8
Very Likely Science (65)
pypi: nmrglue
A module for working with NMR data in Python
Papers that mentioned: 8
Very Likely Science (80)
pypi: sheet
Tools to extract content from ipython (jupyter) notebooks
Papers that mentioned: 8
Very Likely Science (65)
pypi: tune
An abstraction layer for hyper parameter tuning
Papers that mentioned: 8
Likely Science (46)
pypi: Ocelot
Static site generator designed for stories
Papers that mentioned: 8
Very Likely Science (65)
pypi: SyGMa
Systematic Generation of potential MetAbolites
Papers that mentioned: 8
Very Likely Science (100)
pypi: LogMeIn
Log in to networks
Papers that mentioned: 8
Very Likely Science (75)
pypi: nipy
A python package for analysis of neuroimaging data
Papers that mentioned: 8
Very Likely Science (90)
bioconductor: SCAN.UPC
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)
Papers that mentioned: 8
Very Likely Science (100)
cran: do
Data Operator
Papers that mentioned: 8
Very Likely Science (75)
bioconductor: slingshot
Tools for ordering single-cell sequencing
Papers that mentioned: 8
Very Likely Science (100)
cran: CARBayesST
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: Rdisop
Decomposition of Isotopic Patterns
Papers that mentioned: 8
Very Likely Science (100)
cran: MBCluster.Seq
Model-Based Clustering for RNA-seq Data
Papers that mentioned: 8
Very Likely Science (75)
pypi: Hamilton
Visualize and control mechanic systems through solving these systems with Hamiltonian mechanics.
Papers that mentioned: 8
Likely Science (40)
pypi: combat
pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
Papers that mentioned: 8
Very Likely Science (100)
cran: exactci
Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases
Papers that mentioned: 8
Very Likely Science (83)
pypi: jspr
A JSON Processor
Papers that mentioned: 8
Very Likely Science (65)
cran: BMTME
Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis
Papers that mentioned: 8
Very Likely Science (85)
cran: CVST
Fast Cross-Validation via Sequential Testing
Papers that mentioned: 8
Very Likely Science (75)
pypi: scikit-optimize
Sequential model-based optimization toolbox.
Papers that mentioned: 8
Very Likely Science (90)
bioconductor: COSNet
Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings
Papers that mentioned: 8
Very Likely Science (100)
cran: brainGraph
Graph Theory Analysis of Brain MRI Data
Papers that mentioned: 8
Very Likely Science (100)
cran: crrstep
Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model
Papers that mentioned: 8
Very Likely Science (93)
bioconductor: rGADEM
de novo motif discovery
Papers that mentioned: 8
Very Likely Science (90)
cran: FER
Financial Engineering in R
Papers that mentioned: 8
Very Likely Science (75)
cran: ssh
Secure Shell (SSH) Client for R
Papers that mentioned: 8
Very Likely Science (83)
cran: DirichletReg
Dirichlet Regression
Papers that mentioned: 8
Very Likely Science (85)
cran: CompQuadForm
Distribution Function of Quadratic Forms in Normal Variables
Papers that mentioned: 8
Very Likely Science (83)
pypi: mdtraj
MDTraj: A modern, open library for the analysis of molecular dynamics trajectories
Papers that mentioned: 8
Very Likely Science (90)
bioconductor: RCAS
RNA Centric Annotation System
Papers that mentioned: 8
Very Likely Science (90)
pypi: ete2
A Python Environment for (phylogenetic) Tree Exploration
Papers that mentioned: 8
Very Likely Science (90)
cran: clustree
Visualise Clusterings at Different Resolutions
Papers that mentioned: 8
Very Likely Science (75)
cran: caretEnsemble
Ensembles of Caret Models
Papers that mentioned: 8
Very Likely Science (77)
cran: PopED
Population (and Individual) Optimal Experimental Design
Papers that mentioned: 8
Very Likely Science (85)
cran: CausalImpact
Inferring Causal Effects using Bayesian Structural Time-Series Models
Papers that mentioned: 8
Very Likely Science (100)
cran: DNAtools
Tools for Analysing Forensic Genetic DNA Data
Papers that mentioned: 8
Very Likely Science (100)
pypi: motmot
A sophisticated mesh class for analysing 3D surfaces.
Papers that mentioned: 8
Very Likely Science (65)
cran: AlgDesign
Algorithmic Experimental Design
Papers that mentioned: 8
Very Likely Science (91)
pypi: GoogleNews
Google News search for Python
Papers that mentioned: 8
Very Likely Science (65)
bioconductor: cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS data
Papers that mentioned: 8
Very Likely Science (90)
bioconductor: scMerge
scMerge: Merging multiple batches of scRNA-seq data
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: pqsfinder
Identification of potential quadruplex forming sequences
Papers that mentioned: 8
Very Likely Science (75)
pypi: CoolProp
Open-source thermodynamic and transport properties database
Papers that mentioned: 8
Very Likely Science (65)
pypi: scikit-survival
Survival analysis built on top of scikit-learn
Papers that mentioned: 8
Very Likely Science (100)
cran: GANPA
Gene Association Network-Based Pathway Analysis (GANPA)
Papers that mentioned: 8
Very Likely Science (93)
cran: dagitty
Graphical Analysis of Structural Causal Models
Papers that mentioned: 8
Very Likely Science (99)
pypi: msalign
msalign: Signal calibration and alignment by reference peaks
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: BatchQC
Batch Effects Quality Control Software
Papers that mentioned: 8
Very Likely Science (100)
pypi: pairwise
Tools for statistical analysis of pairwise survey data.
Papers that mentioned: 8
Very Likely Science (75)
bioconductor: anota2seq
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
Papers that mentioned: 8
Very Likely Science (100)
cran: FADA
Variable Selection for Supervised Classification in High Dimension
Papers that mentioned: 8
Very Likely Science (75)
cran: ggjoy
Joyplots in 'ggplot2'
Papers that mentioned: 8
Very Likely Science (100)
cran: DoseFinding
Planning and Analyzing Dose Finding Experiments
Papers that mentioned: 8
Very Likely Science (85)