Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: c3net

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/c3net

Inferring Large-Scale Gene Networks with C3NET
3 versions
Latest release: almost 2 years ago
2 dependent packages
397 downloads last month

Papers Mentioning c3net 8

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
Cited by: 105
Author(s): Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Fulvio D’Angelo, Gianluca Bontempi, Michele Ceccarelli, Houtan Noushmehr
Software Mentions: 17
Published: over 7 years ago

10.1186/1471-2164-14-46

Systems infection biology: a compartmentalized immune network of pig spleen challenged with Haemophilus parasuis
Cited by: 9
Author(s): Ming Zhao, Xiangdong Liu, Xinyun Li, Hongbo Chen, Hui Jin, Rui Zhou, Mengjin Zhu, Shuhong Zhao
Software Mentions: 13
Published: over 11 years ago

10.1016/j.celrep.2020.107908

Meta-Analysis of the Alzheimer’s Disease Human Brain Transcriptome and Functional Dissection in Mouse Models
Cited by: 174
Author(s): Ying-Wooi Wan, Rami Al‐Ouran, Carl Grant Mangleburg, Thanneer M. Perumal, Tom V. Lee, Katherine S. Allison, Vivek Swarup, Cory C. Funk, Chris Gaiteri, Mariet Allen, Minghui Wang, Sarah M. Neuner, Catherine C. Kaczorowski, Vivek Philip, Gareth R. Howell, Heidi Martini‐Stoica, Hui Zheng, Hongkang Mei, Xiaoyan Zhong, Jungwoo Wren Kim, Valina L. Dawson, Ted M. Dawson, Ping‐Chieh Pao, Li‐Huei Tsai, Jean‐Vianney Haure‐Mirande, Michelle E. Ehrlich, Paramita Chakrabarty, Yona Levites, Xue Wang, Eric B. Dammer, Gyan Srivastava, Sumit Mukherjee, Solveig K. Sieberts, Larsson Omberg, Kristen K. Dang, James A. Eddy, Phil Snyder, Yooree Chae, Sandeep Amberkar, Wenbin Wei, Winston Hide, Christoph Preuß, Ayla Ergün, Philip J. Ebert, David Airey, Sara Mostafavi, Lei Yu, Hans‐Ulrich Klein, Gregory W. Carter, David A. Collier, Todd E. Golde, Aĺlan I. Levey, David A. Bennett, Karol Estrada, T. Matthew Townsend, Bin Zhang, Eric E. Schadt, Philip L. De Jager, Nathan D. Price, Nilüfer Ertekin-Taner, Zhandong Liu, Zhandong Liu, Lara M. Mangravite, Benjamin A. Logsdon
Software Mentions: 11
Published: almost 4 years ago

10.1186/s12864-016-3317-7

A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data
Cited by: 32
Author(s): Yongli Hu, Takeshi Hase, Hui Peng Li, Shyam Prabhakar, Hiroaki Kitano, See Ket Ng, Samik Ghosh, Lionel Wee
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pcbi.1003361

Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks
Cited by: 33
Author(s): Takeshi Hase, Samik Ghosh, Ryota Yamanaka, Hiroaki Kitano
Software Mentions: 4
Published: over 10 years ago

10.1186/1745-6150-6-31

Structural influence of gene networks on their inference: analysis of C3NET
Cited by: 54
Author(s): Gökmen Altay, Frank Emmert‐Streib
Software Mentions: 3
Published: over 13 years ago

10.1186/s13024-018-0296-y

Genome-wide RNAseq study of the molecular mechanisms underlying microglia activation in response to pathological tau perturbation in the rTg4510 tau transgenic animal model
Cited by: 46
Author(s): Hong Wang, Yupeng Li, John Ryder, Justin T. Hole, Philip J. Ebert, David Airey, Hui-Rong Qian, Benjamin A. Logsdon, Alice Fisher, Zeshan Ahmed, Tracey K. Murray, Annalisa Cavallini, Suchira Bose, Brian J. Eastwood, David A. Collier, Jeffrey L. Dage, Bradley B. Miller, Kalpana Merchant, Michael O’Neill, Ronald B. DeMattos
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0119978

Molecular Dynamics Study of Naturally Existing Cavity Couplings in Proteins
Cited by: 10
Author(s): Montserrat Barbany, Tim Meyer, Ignacio Faustino, Marco D’Abramo, Jordi Morata, Modesto Orozco, Xavier de la Cruz
Software Mentions: 2
Published: about 9 years ago