Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: pqsfinder
https://packages.ecosyste.ms/registries/bioconductor.org/packages/pqsfinder
Identification of potential quadruplex forming sequences
1 version
Latest release: about 1 year ago
11,740 downloads total
Papers Mentioning pqsfinder 8
10.1038/s41598-019-55453-8
MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichmentCited by: 2
Author(s): Andigoni Malousi, Sofia Kouidou, Maria Tsagiopoulou, Nikos Papakonstantinou, Emmanouil Bouras, Elisavet Georgiou, Georgios Tzimagiorgis, Kostas Stamatopoulos
Software Mentions: 7
Published: almost 5 years ago
10.1371/journal.pcbi.1009308
DeepG4: A deep learning approach to predict cell-type specific active G-quadruplex regionsCited by: 14
Author(s): Vincent Rocher, Matthieu Genais, Elissar Nassereddine, Raphaël Mourad
Software Mentions: 5
Published: over 3 years ago
10.1186/s12864-018-4563-7
Quadruplex DNA in long terminal repeats in maize LTR retrotransposons inhibits the expression of a reporter gene in yeastCited by: 11
Author(s): Viktor Tokan, Janka Puterová, Matej Lexa, Eduard Kejnovský
Software Mentions: 2
Published: over 6 years ago
10.3389/fgene.2020.587829
Whole Genome Identification of Potential G-Quadruplexes and Analysis of the G-Quadruplex Binding Domain for SARS-CoV-2Cited by: 31
Author(s): Rongxin Zhang, Ke Xiao, Yu Gu, Hongde Liu, Xiao Sun
Software Mentions: 2
Published: about 4 years ago
10.3389/fpls.2020.593692
G4 Structures in Control of Replication and Transcription of rRNA GenesCited by: 12
Author(s): Kateřina Havlová, Jiřı́ Fajkus
Software Mentions: 2
Published: about 4 years ago
10.7717/peerj.8569
Tight DNA-protein complexes isolated from barley seedlings are rich in potential guanine quadruplex sequencesCited by: 4
Author(s): Tatjana Sjakste, Elīna Ļeonova, Rudolfs Petrovs, Ilva Trapiņa, Marion S. Röder, Nikolajs Sjakste
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2021.678689
Mosaic Arrangement of the 5S rDNA in the Aquatic Plant Landoltia punctata (Lemnaceae)Cited by: 9
Author(s): Guimin Chen, Anton Stepanenko, Nikolai Borisjuk
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.568546
PENGUINN: Precise Exploration of Nuclear G-Quadruplexes Using Interpretable Neural NetworksCited by: 13
Author(s): Eva Klimentová, Jakub Poláček, Petr Šimeček, Panagiotis Alexiou
Software Mentions: 1
Published: about 4 years ago