Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: rGADEM
https://packages.ecosyste.ms/registries/bioconductor.org/packages/rGADEM
de novo motif discovery
1 version
Latest release: 10 months ago
1 dependent package
85,886 downloads total
Papers Mentioning rGADEM 8
10.12688/f1000research.8923.2
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packagesCited by: 105
Author(s): Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Fulvio D’Angelo, Gianluca Bontempi, Michele Ceccarelli, Houtan Noushmehr
Software Mentions: 17
Published: over 7 years ago
10.1371/journal.pone.0016432
An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-SeqCited by: 41
Author(s): Eloi Mercier, Arnaud Droit, Leping Li, Gordon Robertson, Xuekui Zhang, Raphaël Gottardo
Software Mentions: 11
Published: over 13 years ago
10.1186/s12859-016-1298-9
Evaluating tools for transcription factor binding site predictionCited by: 75
Author(s): Narayan Jayaram, Daniel Usvyat, Andrew C.R. Martin
Software Mentions: 6
Published: over 7 years ago
10.1093/biostatistics/kxy084
MACPET: model-based analysis for ChIA-PETCited by: 0
Author(s): Ioannis Vardaxis, Finn Drabløs, Morten Rye, Bo Henry Lindqvist
Software Mentions: 4
Published: over 5 years ago
10.1242/dev.116996
Gene activation-associated long noncoding RNAs function in mouse preimplantation developmentCited by: 71
Author(s): Nobuhiko Hamazaki, Masahiro Uesaka, Kinichi Nakashima, Kiyokazu Agata, Takuya Imamura
Software Mentions: 3
Published: over 9 years ago
10.1186/1471-2164-15-35
Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammalsCited by: 91
Author(s): Masahiro Uesaka, Osamu Nishimura, Yasuhiro Go, Kinichi Nakashima, Kiyokazu Agata, Takuya Imamura
Software Mentions: 3
Published: over 10 years ago
10.3389/fbioe.2018.00117
Systems and Synthetic Biology Approaches to Engineer Fungi for Fine Chemical ProductionCited by: 30
Author(s): Leonardo Martins-Santana, Luísa Czamanski Nora, Ananda Sanches-Medeiros, Gabriel Lencioni Lovate, Murilo Henrique Anzolini Cassiano, Rafael Silva‐Rocha
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2016.01433
Gene Evolutionary Trajectories and GC Patterns Driven by Recombination in Zea maysCited by: 14
Author(s): Anitha Sundararajan, Stefanie Dukowic-Schulze, Madeline Kwicklis, Kayla Engstrom, Nathan S. Garcia, Oliver J. Oviedo, Thiruvarangan Ramaraj, Michael Gonzales, Yan He, Minghui Wang, Qi Sun, Jarosław Pillardy, Shahryar F. Kianian, Wojciech P. Pawlowski, Changbin Chen, Joann Mudge
Software Mentions: 1
Published: almost 8 years ago