Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: ete2

https://packages.ecosyste.ms/registries/pypi.org/packages/ete2

A Python Environment for (phylogenetic) Tree Exploration
47 versions
Latest release: about 9 years ago
1 dependent package
511 downloads last month

Papers Mentioning ete2 8

SONAR: A High-Throughput Pipeline for Inferring Antibody Ontogenies from Longitudinal Sequencing of B Cell Transcripts
Cited by: 52
Author(s): Chaim A. Schramm, Zizhang Sheng, Zhenhai Zhang, John R. Mascola, Peter D. Kwong, Lawrence Shapiro
Software Mentions: 10
Published: about 8 years ago

10.3390/genes11091105

Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota
Cited by: 44
Author(s): Astrid P. Heikema, Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia Hiltemann, Willem de Koning, Robert Kraaij, Maria A. J. de Ridder, Chantal B. van Houten, Louis Bont, Andrew Stubbs, John P. Hays
Software Mentions: 3
Published: about 4 years ago

10.1093/gbe/evz072

Sequencing the Obligate Intracellular Rhabdochlamydia helvetica within Its Tick Host Ixodes ricinus to Investigate Their Symbiotic Relationship
Cited by: 20
Author(s): Trestan Pillonel, Claire Bertelli, Sébastien Aeby, Marie de Barsy, Nicolas Jacquier, Carole Kebbi-Beghdadi, Linda Mueller, Manon Vouga, Gilbert Greub
Software Mentions: 2
Published: over 5 years ago

10.1038/srep23122

Insights into Adaptations to a Near-Obligate Nematode Endoparasitic Lifestyle from the Finished Genome of Drechmeria coniospora
Cited by: 31
Author(s): Liwen Zhang, Zhengfu Zhou, Qiannan Guo, Like Fokkens, Márton Miskei, István Pócsi, Wei Zhang, Ming Chen, Lei Wang, Yamin Sun, Bruno Giuliano Garisto Donzelli, Donna M. Gibson, David R. Nelson, Jian Luo, Martijn Rep, Huan Liu, Shengnan Yang, Jing Wang, Stuart B. Krasnoff, Yuquan Xu, István Molnár, Min Lin
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.567431

Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria
Cited by: 35
Author(s): Hugo Doré, Gregory K. Farrant, Ulysse Guyet, Julie Haguait, Florian Humily, Morgane Ratin, Frances Diana Pitt, Martin Ostrowski, Christophe Six, Loraine Brillet-Guéguen, Mark Hoebeke, Antoine Bisch, Gildas Le Corguillé, Erwan Corre, Karine Labadie, Jean‐Marc Aury, Patrick Wincker, Dong Han Choi, Jae Hoon Noh, Damien Eveillard, David J. Scanlan, Frédéric Partensky, Laurence Garczarek
Software Mentions: 2
Published: about 4 years ago

10.1007/s13353-016-0357-2

Genome-wide identification, characterisation and expression profiles of calcium-dependent protein kinase genes in barley (Hordeum vulgare L.)
Cited by: 17
Author(s): Olga Fedorowicz-Strońska, Grzegorz Koczyk, M. Kaczmarek, Paweł Krajewski, Jan Sadowski
Software Mentions: 1
Published: over 8 years ago

10.1038/srep11253

HIV-infected sex workers with beneficial HLA-variants are potential hubs for selection of HIV-1 recombinants that may affect disease progression
Cited by: 6
Author(s): Chih‐Hao Chang, Nicolaas Christiaan Kist, Tammy L. Stuart Chester, Vattipally B. Sreenu, Melissa A. Herman, Ma Luo, Daniel Lunn, John I. Bell, Francis A. Plummer, T. Blake Ball, Aris Katzourakis, Astrid K. N. Iversen
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-15-1027

Automated classification of tailed bacteriophages according to their neck organization
Cited by: 152
Author(s): Anne Lopes, Paulo Tavares, Marie-Agnès Petit, Raphaël Guérois, Sophie Zinn‐Justin
Software Mentions: 1
Published: almost 10 years ago