Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: SyGMa

https://packages.ecosyste.ms/registries/pypi.org/packages/SyGMa

Systematic Generation of potential MetAbolites
3 versions
Latest release: over 7 years ago
20 downloads last month

Papers Mentioning SyGMa 8

Deep metabolome: Applications of deep learning in metabolomics
Cited by: 76
Author(s): Yotsawat Pomyen, Kwanjeera Wanichthanarak, Patcha Poungsombat, Johannes F. Fahrmann, Dmitry Grapov, Sakda Khoomrung
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.65543

NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolism
Cited by: 7
Author(s): Homa MohammadiPeyhani, Anush Chiappino-Pepe, Kiandokht Haddadi, Jasmin Hafner, Noushin Hadadi, Vassily Hatzimanikatis
Software Mentions: 3
Published: about 3 years ago

10.3389/fphar.2019.01586

Deep Learning Based Drug Metabolites Prediction
Cited by: 16
Author(s): Disha Wang, Wenjun Liu, Zihao Shen, Lei Jiang, Jie Wang, Shiliang Li, Honglin Li
Software Mentions: 3
Published: over 4 years ago

10.1111/cbdd.13445

Computational methods and tools to predict cytochrome P450 metabolism for drug discovery
Cited by: 98
Author(s): Jonathan D. Tyzack, Johannes Kirchmair
Software Mentions: 3
Published: over 5 years ago

10.3389/fchem.2019.00402

GLORY: Generator of the Structures of Likely Cytochrome P450 Metabolites Based on Predicted Sites of Metabolism
Cited by: 56
Author(s): Christina de Bruyn Kops, Conrad Stork, Martin Šícho, Nikolay Kochev, Daniel Svozil, Nina Jeliazkova, Johannes Kirchmair
Software Mentions: 2
Published: over 5 years ago

10.1186/s13065-017-0290-4

RD-Metabolizer: an integrated and reaction types extensive approach to predict metabolic sites and metabolites of drug-like molecules
Cited by: 6
Author(s): Jiajia Meng, Shiliang Li, Xiaofeng Liu, Mingyue Zheng, Honglin Li
Software Mentions: 2
Published: about 7 years ago

10.1186/s13321-018-0324-5

BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification
Cited by: 233
Author(s): Yannick Djoumbou-Feunang, Jarlei Fiamoncini, Alberto Gil-de-la-Fuente, Russell Greiner, Claudine Manach, David S. Wishart
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-021-04363-6

Constructing xenobiotic maps of metabolism to predict enzymes catalyzing metabolites capable of binding to DNA
Cited by: 4
Author(s): Maël Conan, Nathalie Théret, Sophie Langouët, Anne Siegel
Software Mentions: 1
Published: almost 3 years ago