Projects: pypi: SyGMa
https://packages.ecosyste.ms/registries/pypi.org/packages/SyGMa
Systematic Generation of potential MetAbolites
3 versions
Latest release: over 9 years ago
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Repository Owner:
3D-e-Chem NLeSC project (organization)
Software repositories for 3D-e-Chem project of Netherlands eScience Center Academic
Software repositories for 3D-e-Chem project of Netherlands eScience Center Academic
Science Score: 100/100
Starting Score: 100 points
Bonuses:
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+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+15
CITATION.cff file
Contains citation file for academic attribution
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-10
PyPI ecosystem
General-purpose ecosystem -
-10
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Very Likely Science (100)
Papers Mentioning SyGMa 8
10.1016/j.csbj.2020.09.033
Deep metabolome: Applications of deep learning in metabolomicsCited by: 76
Author(s): Yotsawat Pomyen, Kwanjeera Wanichthanarak, Patcha Poungsombat, Johannes F. Fahrmann, Dmitry Grapov, Sakda Khoomrung
Software Mentions: 4
Published: over 6 years ago
10.7554/eLife.65543
NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolismCited by: 7
Author(s): Homa MohammadiPeyhani, Anush Chiappino-Pepe, Kiandokht Haddadi, Jasmin Hafner, Noushin Hadadi, Vassily Hatzimanikatis
Software Mentions: 3
Published: almost 5 years ago
10.3389/fphar.2019.01586
Deep Learning Based Drug Metabolites PredictionCited by: 16
Author(s): Disha Wang, Wenjun Liu, Zihao Shen, Lei Jiang, Jie Wang, Shiliang Li, Honglin Li
Software Mentions: 3
Published: over 6 years ago
10.1111/cbdd.13445
Computational methods and tools to predict cytochrome P450 metabolism for drug discoveryCited by: 98
Author(s): Jonathan D. Tyzack, Johannes Kirchmair
Software Mentions: 3
Published: over 7 years ago
10.3389/fchem.2019.00402
GLORY: Generator of the Structures of Likely Cytochrome P450 Metabolites Based on Predicted Sites of MetabolismCited by: 56
Author(s): Christina de Bruyn Kops, Conrad Stork, Martin Šícho, Nikolay Kochev, Daniel Svozil, Nina Jeliazkova, Johannes Kirchmair
Software Mentions: 2
Published: about 7 years ago
10.1186/s13065-017-0290-4
RD-Metabolizer: an integrated and reaction types extensive approach to predict metabolic sites and metabolites of drug-like moleculesCited by: 6
Author(s): Jiajia Meng, Shiliang Li, Xiaofeng Liu, Mingyue Zheng, Honglin Li
Software Mentions: 2
Published: almost 9 years ago
10.1186/s13321-018-0324-5
BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identificationCited by: 233
Author(s): Yannick Djoumbou-Feunang, Jarlei Fiamoncini, Alberto Gil-de-la-Fuente, Russell Greiner, Claudine Manach, David S. Wishart
Software Mentions: 1
Published: over 7 years ago
10.1186/s12859-021-04363-6
Constructing xenobiotic maps of metabolism to predict enzymes catalyzing metabolites capable of binding to DNACited by: 4
Author(s): Maël Conan, Nathalie Théret, Sophie Langouët, Anne Siegel
Software Mentions: 1
Published: almost 5 years ago