Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: combat

https://packages.ecosyste.ms/registries/pypi.org/packages/combat

pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
7 versions
Latest release: almost 2 years ago
3 dependent packages
2,230 downloads last month

Papers Mentioning combat 8

10.1111/jcmm.16552

Identification of autophagy‐related genes signature predicts chemotherapeutic and immunotherapeutic efficiency in bladder cancer (BLCA)
Cited by: 8
Author(s): Rui Cao, Bo Ma, Gang Wang, Yaoyi Xiong, Ye Tian, Lushun Yuan
Software Mentions: 11
Published: over 3 years ago

10.1371/journal.pone.0143970

A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome
Cited by: 37
Author(s): Katherine James, Shereen Al-Ali, Jessica Tarn, Simon Cockell, Colin S. Gillespie, Victoria Hindmarsh, James Locke, Sheryl Mitchell, Dennis Lendrem, Simon Bowman, Elizabeth Price, Colin Pease, Paul Emery, Peter Lanyon, John Hunter, Monica Gupta, Michèle Bombardieri, Nurhan Sutcliffe, Costantino Pitzalis, John McLaren, Annie Cooper, Marian Regan, Ian Giles, David Isenberg, Vadivelu Saravanan, David Coady, Bhaskar Dasgupta, Neil McHugh, Steven Young-Min, Robert J. Moots, Nagui Gendi, Mohammed Akil, Bridget Griffiths, Anil Wipat, Julia L. Newton, David Jones, John D. Isaacs, Jennifer Hallinan, Wan‐Fai Ng
Software Mentions: 8
Published: almost 9 years ago

10.1186/s13059-019-1764-6

BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes
Cited by: 94
Author(s): Tongxin Wang, Travis Johnson, Wei Shao, Zixiao Lu, Bryan R. Helm, Jie Zhang, Kun Huang
Software Mentions: 5
Published: about 5 years ago

10.1007/s12032-021-01464-3

Dual inhibition of TGFβ and AXL as a novel therapy for human colorectal adenocarcinoma with mesenchymal phenotype
Cited by: 6
Author(s): Davide Ciardiello, Bernadette Blauensteiner, Nunzia Matrone, Valentina Belli, Thomas Mohr, Pietro Paolo Vitiello, Giulia Martini, L. Poliero, Claudia Cardone, Stefania Napolitano, Vincenzo De Falco, Emilio Francesco Giunta, Vincenza Ciaramella, Carminia Della Corte, Giusi Barra, Francesco Selvaggi, Renato Franco, Federica Zito Marino, Antonio Cuomo, Teresa Troiani, Maria Sibilia, Fortunato Ciardiello, Erika Martinelli
Software Mentions: 4
Published: over 3 years ago

10.1007/s10549-020-05856-3

Immune system and angiogenesis-related potential surrogate biomarkers of response to everolimus-based treatment in hormone receptor-positive breast cancer: an exploratory study
Cited by: 8
Author(s): Francesco Schettini, Navid Sobhani, Anna Ianza, Tiziana Triulzi, Alfredo Molteni, Maria Chiara Lazzari, Carla Strina, Manuela Milani, Silvia Paola Corona, Marianna Sirico, Ottavia Bernocchi, Fabiola Giudici, M. Cappelletti, Eva Ciruelos, Guy Jérusalem, S. Loi, Stephen B. Fox, Daniele Generali
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2105-6-160

Multiple sequence alignments of partially coding nucleic acid sequences
Cited by: 23
Author(s): Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried, Peter F. Stadler
Software Mentions: 2
Published: over 19 years ago

10.1186/s13148-017-0349-z

Associations between maternal risk factors of adverse pregnancy and birth outcomes and the offspring epigenetic clock of gestational age at birth
Cited by: 63
Author(s): Polina Girchenko, Jari Lahti, Darina Czamara, Anna K. Knight, Meaghan J. Jones, Anna Suarez, Esa Hämäläinen, Eero Kajantie, Hannele Laivuori, Pia Villa, Rebecca M. Reynolds, Michæl S. Kobor, Alicia K. Smith, Elisabeth B. Binder, Katri Räikkönen
Software Mentions: 1
Published: over 7 years ago

10.1186/s12863-020-00899-3

MCC-SP: a powerful integration method for identification of causal pathways from genetic variants to complex disease
Cited by: 3
Author(s): Yaobin Zhu, Jiadong Ji, Weiqiang Lin, Mingzhuo Li, Lu Liu, Huanhuan Zhu, Fuzhong Xue, Xiujun Li, Xiang Zhou, Zhongshang Yuan
Software Mentions: 1
Published: about 4 years ago