cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1042/BSR20202898

Comprehensive analysis reveals a prognostic and therapeutic biomarker CD3D in the breast carcinoma microenvironment
Cited by: 13
Author(s): Zhipeng Zhu, Weipeng Ye, Xiaofang Wu, Sihao Lin, Jiuhua Xu, Lulu Li, Jiayi Li, Haibin Wang, Zhengjie Huang
Software Mentions: 9
Published: over 5 years ago

10.1002/cam4.2774

Identification of prognostic genes in adrenocortical carcinoma microenvironment based on bioinformatic methods
Cited by: 39
Author(s): Xiao Li, Yang Gao, Zicheng Xu, Zheng Zhang, Yuxiao Zheng, Feng Qi
Software Mentions: 9
Published: over 6 years ago

10.1186/s12935-021-02215-0

Identification of the prognostic value of a 2-gene signature of the WNT gene family in UCEC using bioinformatics and real-world data
Cited by: 9
Author(s): Yuexin Hu, Mingjun Zheng, Dandan Zhang, Rui Gou, Ouxuan Liu, Shuang Wang, Bei Lin
Software Mentions: 9
Published: almost 5 years ago

10.1186/s12859-019-2799-0

FastqPuri: high-performance preprocessing of RNA-seq data
Cited by: 22
Author(s): Paula Pérez-Rubio, Claudio Lottaz, Julia C. Engelmann
Software Mentions: 9
Published: over 7 years ago

10.1186/s13041-020-00681-7

Brain transcriptome analysis reveals subtle effects on mitochondrial function and iron homeostasis of mutations in the SORL1 gene implicated in early onset familial Alzheimer’s disease
Cited by: 22
Author(s): Karissa Barthelson, Stephen Pederson, Morgan Newman, Michael Lardelli
Software Mentions: 9
Published: almost 6 years ago

10.3389/fmolb.2020.604252

Prognostic Model of Colorectal Cancer Constructed by Eight Immune-Related Genes
Cited by: 14
Author(s): Shuting Wen, Lina He, Zhuotai Zhong, Hong Mi, Fengbin Liu
Software Mentions: 9
Published: over 5 years ago

10.1186/s12974-018-1113-9

Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness
Cited by: 45
Author(s): David G. Ashbrook, Benjamin Hing, Lindsay T. Michalovicz, Kimberly A. Kelly, Julie V. Miller, Wilfred C. de Vega, Diane B. Miller, Gordon Broderick, James P. O’Callaghan, Patrick O. McGowan
Software Mentions: 9
Published: over 8 years ago

10.7717/peerj.11687

Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
Cited by: 5
Author(s): Guangxu Tu, Weilin Peng, Qidong Cai, Zhenyu Zhao, Ping Xiong, Boxue He, Pengfei Zhang, Shuai Shi, Yongguang Tao, Xiang Wang
Software Mentions: 9
Published: about 5 years ago

10.15252/msb.20177862

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
Cited by: 53
Author(s): Daniela Michlmayr, Theodore R. Pak, Adeeb Rahman, El ad David Amir, Eun Young Kim, Seunghee Kim‐Schulze, Maria Suprun, Michael G. Stewart, Guajira P. Thomas, Ángel Balmaseda, Li Wang, Jun Zhu, Mayte Suárez‐Fariñas, Steven M. Wolinsky, Andrew Kasarskis, Eva Harris
Software Mentions: 9
Published: about 8 years ago

10.1155/2021/9911184

Identification of Disease-Specific Hub Biomarkers and Immune Infiltration in Osteoarthritis and Rheumatoid Arthritis Synovial Tissues by Bioinformatics Analysis
Cited by: 7
Author(s): Fei Sun, Jian Zhou, Peiyu Pu, Chen Qiu, Jia rui Cao, Hao Peng
Software Mentions: 9
Published: over 5 years ago

10.3389/fonc.2020.593760

Medication for Acromegaly Reduces Expression of MUC16, MACC1 and GRHL2 in Pituitary Neuroendocrine Tumour Tissue
Cited by: 4
Author(s): Rihards Saksis, Ivars Silamiķelis, Pola Laksa, Kaspars Megnis, Raitis Pečulis, Ilona Mandrika, Olesja Rogoza, Ramona Petrovska, Inga Balcere, Ilze Konrāde, Liva Steina, Jānis Stukēns, Austra Breikša, Jurijs Nazarovs, Jeļizaveta Sokolovska, Valdis Pīrāgs, Jānis Kloviņš, Vita Rovīte
Software Mentions: 9
Published: over 5 years ago

10.1186/s12867-018-0111-x

Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosis
Cited by: 4
Author(s): Paola M. Boggiatto, Daniel Fitzsimmons, Darrell O. Bayles, David P. Alt, Catherine E. Vrentas, Steven C. Olsen
Software Mentions: 9
Published: about 8 years ago

10.3389/fonc.2020.573141

Significance of Tumor Mutation Burden in Immune Infiltration and Prognosis in Cutaneous Melanoma
Cited by: 57
Author(s): Kai Kang, Fucun Xie, Jianshan Mao, Yi Bai, Xiang Wang
Software Mentions: 9
Published: almost 6 years ago

10.7554/eLife.58081

IER5, a DNA damage response gene, is required for Notch-mediated induction of squamous cell differentiation
Cited by: 11
Author(s): Pan Li, Madeleine E. Lemieux, Tom Thomas, Julia M. Rogers, Colin H. Lipper, Winston Lee, C. Anderson Johnson, Lynette M. Sholl, Andrew P. South, Jarrod A. Marto, Guillaume Adelmant, Stephen C. Blacklow, Jon C. Aster
Software Mentions: 9
Published: almost 6 years ago

10.1111/jcmm.14767

An EMT‐related gene signature for the prognosis of human bladder cancer
Cited by: 113
Author(s): Rui Cao, Lushun Yuan, Bo Ma, Gang Wang, Wei Qiu, Ye Tian
Software Mentions: 9
Published: almost 7 years ago

10.3389/fgene.2021.661988

Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma
Cited by: 12
Author(s): Xingte Chen, Lei Wang, Liang Hong, Zhiying Su, Xiaohong Zhong, Han Zhou, Xueqing Zhang, Junxin Wang, Lingdong Shao
Software Mentions: 9
Published: about 5 years ago

10.3390/cancers12051076

Tumor-Infiltrating CD8 T Cells Predict Clinical Breast Cancer Outcomes in Young Women
Cited by: 31
Author(s): Yong Won Jin, Pingzhao Hu
Software Mentions: 9
Published: over 6 years ago

10.7554/eLife.54074

A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
Cited by: 89
Author(s): Annette D. Allen, Megan C Neville, Sebastian Birtles, Vincent Croset, Christoph Daniel Treiber, Scott Waddell, Stephen F. Goodwin
Software Mentions: 9
Published: over 6 years ago

10.7554/eLife.53278

GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm
Cited by: 25
Author(s): Arun Sharma, Lauren Wasson, Jon A. L. Willcox, Sarah U. Morton, Joshua M. Gorham, Daniel M. DeLaughter, Meraj Neyazi, Manuel Schmid, Radhika Agarwal, Min Young Jang, Christopher N. Toepfer, Tarsha Ward, Yuri Kim, Alexandre C. Pereira, Steven R. DePalma, Angela Tai, Seongwon Kim, David A. Conner, Daniel Bernstein, Bruce D. Gelb, Wendy K. Chung, Elizabeth Goldmuntz, George A. Porter, Martin Tristani‐Firouzi, Deepak Srivastava, Jonathan G. Seidman, Christine E. Seidman
Software Mentions: 9
Published: almost 6 years ago

10.3389/fncel.2020.00065

Single-Cell Analysis of Neuroinflammatory Responses Following Intracranial Injection of G-Deleted Rabies Viruses
Cited by: 29
Author(s): Kee Wui Huang, Bernardo L. Sabatini
Software Mentions: 9
Published: over 6 years ago

10.7554/eLife.58178

16p11.2 microdeletion imparts transcriptional alterations in human iPSC-derived models of early neural development
Cited by: 24
Author(s): Julien G. Roth, Kristin Muench, Aditya Asokan, Victoria M Mallett, Hongwei Gai, Yogendra Verma, Stephen G. Weber, Carol Charlton, Jonas L. Fowler, Kyle M. Loh, Ricardo E. Dolmetsch, Theo Palmer
Software Mentions: 9
Published: almost 6 years ago

10.1038/s41388-018-0450-6

The miR-96 and RARγ signaling axis governs androgen signaling and prostate cancer progression
Cited by: 40
Author(s): Mark D. Long, Prashant Singh, James R. Russell, Gerard Llimos, Spencer R. Rosario, Abbas Rizvi, Patrick R. van den Berg, Jason Kirk, Lara E. Sucheston‐Campbell, Dominic J. Smiraglia, Moray J. Campbell
Software Mentions: 9
Published: about 8 years ago

10.1155/2021/6290261

Identification of a Tumor Microenvironment-Related Gene Signature Indicative of Disease Prognosis and Treatment Response in Colon Cancer
Cited by: 24
Author(s): Wenzheng Chen, Jianfeng Huang, Jianbo Xiong, Pengcheng Fu, Changyu Chen, Yi Liu, Zhengrong Li, Zhigang Jie, Yi Cao
Software Mentions: 9
Published: about 5 years ago

10.3389/fgene.2020.576566

Systematic Profiling of Immune Risk Model to Predict Survival and Immunotherapy Response in Head and Neck Squamous Cell Carcinoma
Cited by: 9
Author(s): Xingyu Liu, Jiarui Chen, Wei Lu, Zhao-Yi Zeng, Jiali Li, Xueping Jiang, Yanping Gao, Yan Gong, Qiuji Wu, Conghua Xie
Software Mentions: 9
Published: almost 6 years ago

10.3389/fgene.2021.623424

Correlations Between Tumor Mutation Burden and Immunocyte Infiltration and Their Prognostic Value in Colon Cancer
Cited by: 17
Author(s): Zhangjian Zhou, Xin Xie, Xuan Wang, Xin Zhang, Wenxin Li, Tuanhe Sun, Yifan Cai, Jianhua Wu, Chengxue Dang, Hao Zhang
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pgen.1009259

Loss of endocytosis-associated RabGEF1 causes aberrant morphogenesis and altered autophagy in photoreceptors leading to retinal degeneration
Cited by: 9
Author(s): Passley Hargrove-Grimes, Anupam Mondal, Jessica Gumerson, Jacob Nellissery, Angel Aponte, Linn Gieser, Haohua Qian, Robert N Fariss, Juan S. Bonifacino, Tiansen Li, Anand Swaroop
Software Mentions: 9
Published: over 5 years ago

10.1126/sciadv.abc8492

Persistent epigenetic reprogramming of sweet taste by diet
Cited by: 29
Author(s): Anoumid Vaziri, Morteza Khabiri, Brendan T. Genaw, Christina E. May, Peter L. Freddolino, Monica Dus
Software Mentions: 9
Published: almost 6 years ago

10.3389/fgene.2019.00880

LINC00460 Hypomethylation Promotes Metastasis in Colorectal Carcinoma
Cited by: 15
Author(s): Hui Zhang, Ya Lu, Jianzhong Wu, Jifeng Feng
Software Mentions: 9
Published: almost 7 years ago

10.7554/eLife.65905

Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
Cited by: 28
Author(s): Sumiko Takao, Lauren Forbes, Masahiro Uni, Shu‐Yuan Cheng, Jose Mario Bello Pineda, Yusuke Tarumoto, Paolo Cifani, Gerard Minuesa, Celine Chen, Michael G. Kharas, Robert K. Bradley, Christopher R. Vakoc, Richard P. Koche, Alex Kentsis
Software Mentions: 9
Published: over 5 years ago

10.7554/eLife.54818

A single-cell survey of Drosophila blood
Cited by: 109
Author(s): Sudhir Gopal Tattikota, Bumsik Cho, Yifang Liu, Yanhui Hu, Víctor Barrera, Michael J. Steinbaugh, Sangtae Yoon, Aram Comjean, Fangge Li, Franz Dervis, Ruei-Jiun Hung, Jin Wu Nam, Shannan Ho Sui, Jiwon Shim, Norbert Perrimon
Software Mentions: 8
Published: over 6 years ago

10.7150/jca.49175

Biological functions and prognostic value of RNA Binding Proteins in clear cell Renal Cell Carcinoma
Cited by: 6
Author(s): Zhenpeng Zhu, Anbang He, Lanruo Lin, Chunru Xu, Tianyu Cai, Lin Jian
Software Mentions: 8
Published: over 6 years ago

10.7150/ijms.51064

Tumor Mutation Burden, Immune Cell Infiltration, and Construction of Immune-Related Genes Prognostic Model in Head and Neck Cancer
Cited by: 32
Author(s): Aimin Jiang, Mengdi Ren, Na Liu, Huan Gao, Jingjing Wang, Xiaoqiang Zheng, Xiao Fu, Xuan Liu, Zhiping Ruan, Tao Tian, Yu Yao
Software Mentions: 8
Published: over 5 years ago

10.3390/cancers12113089

CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the Pancreas
Cited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0220926

Gut microbiome shifts with urbanization and potentially facilitates a zoonotic pathogen in a wading bird
Cited by: 50
Author(s): Maureen H. Murray, Emily W. Lankau, Anjelika D. Kidd, Catharine N. Welch, Taylor Ellison, Henry Adams, Erin K. Lipp, Sonia M. Hernández
Software Mentions: 8
Published: over 6 years ago

10.3389/fonc.2021.665360

DDX60 Is Associated With Glioma Malignancy and Serves as a Potential Immunotherapy Biomarker
Cited by: 7
Author(s): Jingwen Zhang, Minjie Fu, Mengli Zhang, Jinsen Zhang, Zunguo Du, Hongyi Zhang, Wei Hua, Ying Mao
Software Mentions: 8
Published: about 5 years ago

10.3389/fonc.2021.630905

Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients
Cited by: 14
Author(s): Fan Yuan, Xingchen Li, Li Tian, Jianliu Wang
Software Mentions: 8
Published: over 5 years ago

10.3389/fvets.2020.00523

Mind the Queue: A Case Study in Visualizing Heterogeneous Behavioral Patterns in Livestock Sensor Data Using Unsupervised Machine Learning Techniques
Cited by: 11
Author(s): Catherine McVey, Fushing Hsieh, Diego Manríquez, Pablo Pinedo, Kristina Horback
Software Mentions: 8
Published: about 6 years ago

10.1128/mSystems.01356-20

Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral Communities
Cited by: 26
Author(s): Jingjie Du, Ahmed A. Zayed, Kristina A. Kigerl, Kylie Zane, Matthew B. Sullivan, Phillip G. Popovich
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0255169

SARS-CoV-2 variant evolution in the United States: High accumulation of viral mutations over time likely through serial Founder Events and mutational bursts
Cited by: 25
Author(s): Rafail Nikolaos Tasakis, Georgios Samaras, Anna Jamison, Michelle Lee, Alexandra Paulus, Gabrielle Whitehouse, Laurent Verkoczy, F. Nina Papavasiliou, Marilyn Diaz
Software Mentions: 8
Published: about 5 years ago

10.3389/fonc.2020.590006

AUNIP Expression Is Correlated With Immune Infiltration and Is a Candidate Diagnostic and Prognostic Biomarker for Hepatocellular Carcinoma and Lung Adenocarcinoma
Cited by: 14
Author(s): Chenxi Ma, Wenyan Kang, Lu Yu, Zongcheng Yang, Di Tian
Software Mentions: 8
Published: over 5 years ago

10.1128/mSystems.00852-20

Virulence of the Pathogen Porphyromonas gingivalis Is Controlled by the CRISPR-Cas Protein Cas3
Cited by: 16
Author(s): José O. Solbiati, Ana E. Duran-Pinedo, Fernanda Godoy Rocha, Frank C. Gibson, Jorge Frias-Lopez
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0200925

PNPase knockout results in mtDNA loss and an altered metabolic gene expression program
Cited by: 12
Author(s): Eriko Shimada, Fasih M. Ahsan, Mahta Nili, Dian Huang, Sean Atamdede, Tara TeSlaa, Dana Case, Xiang Yu, Brian D. Gregory, Benjamin J. Perrin, Carla M. Koehler, Michael A. Teitell
Software Mentions: 8
Published: about 8 years ago

10.1371/journal.pcbi.1004956

Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis
Cited by: 38
Author(s): Rebeca Campos-Sánchez, Marzia A. Cremona, Alessia Pini, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 8
Published: about 10 years ago

10.3389/fonc.2020.00835

Development and Validation of a 12-Gene Immune Relevant Prognostic Signature for Lung Adenocarcinoma Through Machine Learning Strategies
Cited by: 14
Author(s): Xue Li, Guoshu Bi, Cheng Zhan, Yi Zhang, Yunfeng Yuan, Hong Fan
Software Mentions: 8
Published: about 6 years ago

10.1111/jcmm.16712

Cytokeratin 5 and cytokeratin 20 inversely correlate with tumour grading in Ta non‐muscle‐invasive bladder cancer
Cited by: 7
Author(s): Tim Muilwijk, Murat Akand, Frank Van der Aa, Vincent De Coninck, Marc Claessens, Robert Hente, Markus Eckstein, Yves Allory, Louis Libbrecht, Steven Joniau, Thomas Gevaert
Software Mentions: 8
Published: about 5 years ago

10.3389/fonc.2020.574939

Identification of an Immune-Related Gene Signature Based on Immunogenomic Landscape Analysis to Predict the Prognosis of Adult Acute Myeloid Leukemia Patients
Cited by: 19
Author(s): Ruiqi Zhu, Huishan Tao, Wenyi Lin, Liang Tang, Yu Hu
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-017-02685-1

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora
Cited by: 73
Author(s): Rachel M. Wright, Carly D. Kenkel, Carly E. Dunn, Erin N. Shilling, Line K. Bay, Mikhail V. Matz
Software Mentions: 8
Published: about 9 years ago

10.3390/jcm9051251

Dysregulations of MicroRNA and Gene Expression in Chronic Venous Disease
Cited by: 12
Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Paulina Chmiel, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 8
Published: over 6 years ago

10.3390/microorganisms9061153

Variation in Human Milk Composition Is Related to Differences in Milk and Infant Fecal Microbial Communities
Cited by: 30
Author(s): Ryan M. Pace, Janet E. Williams, Bianca Robertson, Kimberly A. Lackey, Courtney L. Meehan, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela G. Kita, Linda J. Kvist, Gloria E. Otoo, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Mark A. McGuire, Lars Bode, Michelle K. McGuire
Software Mentions: 8
Published: about 5 years ago

10.3389/fmicb.2020.01327

Microbial and Geochemical Dynamics of an Aquifer Stimulated for Microbial Induced Calcite Precipitation (MICP)
Cited by: 11
Author(s): Juliette Ohan, Sina Saneiyan, J. Lee, Andrew W. Bartlow, Dimitrios Ntarlagiannis, Susan E. Burns, Frederick S. Colwell
Software Mentions: 8
Published: about 6 years ago

10.3389/fmicb.2018.02621

Elevated CO2 Has Little Influence on the Bacterial Communities Associated With the pH-Tolerant Coral, Massive Porites spp.
Cited by: 18
Author(s): Paul A. O’Brien, Hillary A. Smith, Stewart Fallon, Katharina Fabricius, Bette L. Willis, Kathleen M. Morrow, David G. Bourne
Software Mentions: 8
Published: almost 8 years ago

10.1128/mBio.00925-19

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera <i>Aspergillus</i> and <i>Penicillium</i>
Cited by: 95
Author(s): Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas
Software Mentions: 8
Published: almost 7 years ago

10.3390/antiox10060864

Blood Plasma Quality Control by Plasma Glutathione Status
Cited by: 2
Author(s): Tamara Tomin, Natalie Bordag, Elmar Zügner, A Al-Baghdadi, Maximilian Schinagl, Ruth Birner‐Gruenberger, Matthias Schittmayer
Software Mentions: 8
Published: about 5 years ago

10.3390/ijms21072337

Differential Targeting of Gr-MDSCs, T Cells and Prostate Cancer Cells by Dactolisib and Dasatinib
Cited by: 10
Author(s): Guoqiang Lü, Zhijian Jin, Xin Lü
Software Mentions: 8
Published: over 6 years ago

10.1016/j.celrep.2018.03.075

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
Cited by: 432
Author(s): Christopher J. Ricketts, Aguirre A. de Cubas, Huihui Fan, Christof C. Smith, Martin Lang, Ed Reznik, Reanne Bowlby, Ewan A. Gibb, Rehan Akbani, Rameen Beroukhim, Donald P. Bottaro, Toni K. Choueiri, Richard A. Gibbs, Andrew K. Godwin, Scott M. Haake, A. Ari Hakimi, Elizabeth P. Henske, James J. Hsieh, Thai H. Ho, Rupa S. Kanchi, Bhavani Krishnan, David J. Kwiatkowski, Wembin Lui, María J. Merino, Gordon B. Mills, Jerome Myers, Michael L. Nickerson, Victor E. Reuter, Laura S. Schmidt, Carl Simon Shelley, Hui Shen, Brian Shuch, Sabina Signoretti, Ramaprasad Srinivasan, Pheroze Tamboli, George V. Thomas, Benjamin G. Vincent, Cathy D. Vocke, David A. Wheeler, Lixing Yang, William Y. Kim, A. Gordon Robertson, Paul T. Spellman, W. Kimryn Rathmell, W. Marston Linehan, Samantha J. Caesar-Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy DeFreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Sam Meier, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Ju Zhang, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michael Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia, Debyani Chakravarty, Walid K. Chatila, Ino de Bruijn, Jianjiong Gao, Benjamin Groß, Zachary J. Heins, Ritika Kundra, Konnor La, Marc Ladanyi, Augustin Luna, Moriah G. Nissan, Angelica Ochoa, Sarah Phillips, Ed Reznik, Francisco Sanchez‐Vega, Chris Sander, Nikolaus Schultz, Robert P. Sheridan, S. Onur Sumer, Yichao Sun, Barry S. Taylor, Jioajiao Wang, Hongxin Zhang, Pavana Anur, Myron Peto, Paul T. Spellman, Christopher C. Benz, Joshua M. Stuart, Christopher Wong, Christina Yau, D. Neil Hayes, Joel S. Parker, Matthew D. Wilkerson, Adrian Ally, Miruna Balasundaram, Reanne Bowlby, Denise Brooks, Rebecca Carlsen, Eric Chuah, Noreen Dhalla, Robert A. Holt, Steven J.M. Jones, Katayoon Kasaian, Darlene Lee, Yussanne Ma, Marco A. Marra, Michael Mayo, Richard A. Moore, Andrew J. Mungall, Karen Mungall, A. Gordon Robertson, Sara Sadeghi, Jacqueline E. Schein, Payal Sipahimalani, Angela Tam, Nina Thiessen, Kane Tse, Tina Wong, Ashton C. Berger, Rameen Beroukhim, Andrew D. Cherniack, Carrie Cibulskis, Stacey Gabriel, Galen F. Gao, Gavin Ha, Matthew Meyerson, Steven E. Schumacher, Juliann Shih, Melanie Kucherlapati, Raju Kucherlapati, Stephen B. Baylin, Leslie Cope, Ludmila Danilova, Moiz S. Bootwalla, Phillip H. Lai, Dennis T. Maglinte, David J. Van Den Berg, Daniel J. Weisenberger, J. Todd Auman, Saianand Balu, Tom Bodenheimer, Cheng Fan, Katherine A. Hoadley, Alan P. Hoyle, Stuart R. Jefferys, Corbin D. Jones, Shaowu Meng, Piotr A. Mieczkowski, Lisle E. Mose, Amy H. Perou, Charles M. Perou, Jeffrey Roach, Yan Shi, Janae V. Simons, Tara Skelly, Matthew G. Soloway, Donghui Tan, Umadevi Veluvolu, Huihui Fan, Toshinori Hinoue, Peter W. Laird, Hui Shen, Wanding Zhou, Michelle Bellair, Kyle Chang, Kyle R. Covington, Chad J. Creighton, Huyen Dinh, Harshavardhan Doddapaneni, Lawrence A. Donehower, Jennifer Drummond, Richard A. Gibbs, Robert Glenn, Walker Hale, Yi Han, Jianhong Hu, Viktoriya Korchina, Sandra Lee, Lora Lewis, Wei Li, Xiuping Liu, Margaret Morgan, Donna Morton, Donna M. Muzny, Jireh Santibanez, Margi Sheth, Eve Shinbrot, Linghua Wang, Min Wang, David A. Wheeler, Xi Liu, Fengmei Zhao, Julian M. Hess, Elizabeth L. Appelbaum, Matthew H. Bailey, Matthew G. Cordes, Li Ding, Catrina C. Fronick, Lucinda A. Fulton, Robert S. Fulton, Cyriac Kandoth, Elaine R. Mardis, Michael D. McLellan, Christopher A. Miller, Heather Schmidt, Richard K. Wilson, Daniel Crain, Erin Curley, Johanna Gardner, Kevin Lau, David Mallery, Scott Morris, Joseph Paulauskis, Robert Penny, Candace Shelton, Troy Shelton, Mark E. Sherman, Eric M. Thompson, Peggy Yena, Jay Bowen, Julie M. Gastier-Foster, Mark Gerken, Kristen Leraas, Tara M. Lichtenberg, Nilsa C. Ramirez, Lisa Wise, Erik Zmuda, Niall M. Corcoran, Tony Costello, Christopher M. Hovens, André Lopes Carvalho, Ana Carolina de Carvalho, José Humberto Tavares Guerreiro Fregnani, Adhemar Longatto‐Filho, Rui Manuel Reis, Cristovam Scapulatempo‐Neto, Henrique C. S. Silveira, Daniel Onofre Vidal, Andrew Burnette, Jennifer Eschbacher, Beth Hermes, Ardene Noss, Rosy Singh, Matthew L. Anderson, Patricia Castro, Michael Ittmann, David G. Huntsman, Bernard Kohl, Xuan Le, Richard Thorp, Chris Andry, Elizabeth Duffy, Vladimir Lyadov, Oxana Paklina, Galiya Setdikova, А. В. Шабунин, М. М. Тавобилов, Christopher McPherson, Ronald E. Warnick, Ross S. Berkowitz, Daniel E. Cramer, Colleen M. Feltmate, Neil S. Horowitz, Adam S. Kibel, Michael G. Muto, Chandrajit P. Raut, Andrei Malykh, Jill S. Barnholtz‐Sloan, Wendi Barrett, Karen Devine, Jordonna Fulop, Quinn T. Ostrom, Kristen Shimmel, Yingli Wolinsky, Andrew E. Sloan, Agostino Maria De Rose, Felice Giuliante, Marc T. Goodman, Beth Y. Karlan, Curt H. Hagedorn, John Eckman, Jodi Harr, Jerome Myers, Kelinda Tucker, Leigh Anne Zach, Brenda Deyarmin, Hai Hu, Leonid Kvecher, Caroline Larson, Richard J. Mural, Stella Somiari, Aleš Vícha, Tomáš Zelinka, Joseph Bennett, Mary Iacocca, Brenda Rabeno, Patricia Swanson, Mathieu Latour, Louis Lacombe, Bernard Têtu, Alain Bergeron, Mary McGraw, Susan M. Staugaitis, John A. Chabot, Hanina Hibshoosh, Antonia R. Sepulveda, Tao Su, Yichen Wang, Olga Potapova, Olga Voronina, Laurence Desjardins, Odette Mariani, Sergio Román-Román, Xavier Sastre, Marc-Henri Stern, Feixiong Cheng, Sabina Signoretti, Andrew Berchuck, Darell D. Bigner, Eric Lipp, Jeffrey R. Marks, Shannon J. McCall, Roger E. McLendon, Angeles Alvarez Secord, Alexis Sharp, Madhusmita Behera, Daniel J. Brat, Amy Chen, Keith A. Delman, Seth D. Force, Fadlo R. Khuri, Kelly R. Magliocca, Shishir K. Maithel, Jeffrey J. Olson, Taofeek K. Owonikoko, Alan Pickens, Suresh S. Ramalingam, Dong Min Shin, Gabriel L. Sica, Erwin G. Van Meir, Hongzheng Zhang, Wil Eijckenboom, Ad J. M. Gillis, Esther Korpershoek, Leendert Looijenga, Wolter Oosterhuis, Hans Stoop, Kim E. van Kessel, Ellen C. Zwarthoff, Chiara Calatozzolo, Lucia Cuppini, Stefania Cuzzubbo, Francesco DiMeco, Gaetano Finocchiaro, Luca Mattei, Alessandro Perin, Bianca Pollo, Chu Chen, J. R. Houck, Pawadee Lohavanichbutr, Arndt Hartmann, Christine Stoehr, Robert Stoehr, Helge Täubert, Sven Wach, Bernd Wullich, Witold Kycler, Dawid Murawa, Maciej Wiznerowicz, Ki Wung Chung, William J. Edenfield, Julie Martin, Éric Baudin, Glenn J. Bubley, Raphael Bueno, Assunta De Rienzo, William G. Richards, Steven N. Kalkanis, Tom Mikkelsen, Houtan Noushmehr, Lisa Scarpace, Nicolas Girard, Marta Aymerich, Elı́as Campo, Eva Giné, Armando López Guillermo, Nguyễn Văn Bang, Phan Thi Hanh, Bui Duc Phu, Yufang Tang, Howard Colman, Kimberley Evason, Peter R. Dottino, John A. Martignetti, Hani Gabra, Hartmut Juhl, Teniola Akeredolu, Serghei Stepa, Dave Hoon, Keunsoo Ahn, Koo Jeong Kang, Felix Beuschlein, Anne Breggia, Michael J. Birrer, Debra A. Bell, Mitesh J. Borad, Alan H. Bryce, Erik P. Castle, Vishal S. Chandan, John C. Cheville, John A. Copland, Michael B. Farnell, Thomas J. Flotte, Nasra H. Giama, Thai H. Ho, Michael L. Kendrick, Jean-Pierre A. Kocher, Karla Kopp, Catherine D. Moser, David M. Nagorney, Daniel J. O’Brien, Brian Patrick O’Neill, Tushar Patel, Gloria Petersen, Florencia G. Que, Michael Rivera, Lewis R. Roberts, Robert C. Smallridge, Thomas C. Smyrk, Melissa L. Stanton, R. Houston Thompson, Michael Torbenson, Ju Dong Yang, Lizhi Zhang, Fadi Brimo, Jaffer A. Ajani, Ana Maria Angulo Gonzalez, Carmen Behrens, Jolanta Bondaruk, Russell R. Broaddus, Bogdan Czerniak, Bita Esmaeli, Junya Fujimoto, Jeffrey E. Gershenwald, Charles Guo, Alexander J. Lazar, Christopher Logothetis, Funda Meric‐Bernstam, César A. Moran, Lois M. Ramondetta, David Rice, Anil K. Sood, Pheroze Tamboli, Timothy C. Thompson, Patricia Troncoso, Anne S. Tsao, Ignacio Wistuba, Candace Carter, Lauren E. Haydu, Peter Hersey, Valerie Jakrot, Hojabr Kakavand, Richard Kefford, Kenneth Lee, Georgina V. Long, Graham J. Mann, Michael J. Quinn, Robyn P.M. Saw, Richard A. Scolyer, Kerwin F. Shannon, Andrew J. Spillane, onathan Stretch, Maria Synott, John Thompson, James S. Wilmott, Hikmat Al‐Ahmadie, Timothy A. Chan, Ronald Ghossein, Anuradha Gopalan, Douglas A. Levine, Victor E. Reuter, Samuel Singer, Bhuvanesh Singh, Nguyen Viet Tien, Thomas Broudy, Cyrus Mirsaidi, Praveen Nair, Paul Drwiega, Judy Miller, Jennifer K. Smith, Howard A. Zaren, Joong-Won Park, Nguyễn Phi Hùng, Electron Kebebew, W. Marston Linehan, Adam R. Metwalli, Karel Pacák, Peter A. Pinto, Mark Schiffman, Laura S. Schmidt, Cathy D. Vocke, Nicolas Wentzensen, Robert A. Worrell, Hannah Yang, Marc Moncrieff, Chandra V. Goparaju, Jonathan Melamed, Harvey I. Pass, Natalia Botnariuc, Irina Caraman, Mircea Cernat, Inga Chemencedji, Adrian Clipca, Serghei Doruc, Ghenadie Gorincioi, Sergiu Mura, Maria Pirtac, Irina Stancul, Diana Tcaciuc, Monique Albert, Iakovina Alexopoulou, Angel Arnaout, John M.S. Bartlett, Jay Engel, Sébastien Gilbert, Jeremy Parfitt, Harman S. Sekhon, George V. Thomas, Doris M. Rassl, Robert C. Rintoul, Carlo Bifulco, Raina Tamakawa, Walter J. Urba, Nicholas K. Hayward, H. Th. Marc Timmers, Anna Antenucci, Francesco Facciolo, Gian Luca Grazi, Mirella Marino, Roberta Merola, Ronald R. de Krijger, Anne‐Paule Gimenez‐Roqueplo, Alain Piché, Simone Chevalier, Ginette McKercher, Kıvanç Birsoy, Gene H. Barnett, Cathy Brewer, Carol Farver, Theresa Naska, Nathan A. Pennell, Daniel P. Raymond, Cathy Schilero, Kathy Smolenski, Cecilia Williams, Carl Morrison, Jeffrey A. Borgia, Michael J. Liptay, Mark Pool, Christopher W. Seder, Kerstin Junker, Larsson Omberg, Mikhail Dinkin, George Manikhas, Domenico Alvaro, Maria Consiglia Bragazzi, Vincenzo Cardinale, Guido Carpino, Eugenio Gaudio, David Chesla, Sandra Cottingham, Michael Dubina, Fedor Moiseenko, Renumathy Dhanasekaran, Karl‐Friedrich Becker, Klaus‐Peter Janssen, Julia Slotta‐Huspenina, Mohamed H. Abdel‐Rahman, Dina Aziz, Sue Bell, Colleen M. Cebulla, Amy Davis, Rebecca Duell, J. Bradley Elder, Joe Hilty, Bahavna Kumar, James C. Lang, Norman L. Lehman, Randy Mandt, Phuong Nguyen, Robert Pilarski, Karan Rai, Lynn Schoenfield, Kelly Senecal, Paul E. Wakely, Paul Hansen, Ronald M. Lechan, James F. Powers, Arthur S. Tischler, William E. Grizzle, Katherine C. Sexton, Alison Kastl, Joel M. Henderson, Sima P. Porten, Jens Waldmann, Martin Fassnacht, L. Sylvia, Dirk Schadendorf, Marta Couce, Markus Graefen, Hartwig Huland, Guido Sauter, Thorsten Schlomm, Ronald Simon, Pierre Tennstedt, Oluwole Olabode, Mark A. Nelson, Oliver F. Bathe, Peter R. Carroll, June M. Chan, Philip J. DiSaia, Pat Glenn, Robin K. Kelley, Charles N. Landen, Joanna Phillips, Michael Prados, Jeffry P. Simko, Karen Smith‐McCune, Scott R. VandenBerg, Kevin K. Roggin, Ashley Fehrenbach, Ady Kendler, Suzanne Sifri, Ruth Steele, Antonio Jimeno, Francis A. Carey, Ian Forgie, Massimo Mannelli, Michael E. Carney, Brenda Hernandez, Benito Campos, Christel Herold‐Mende, Christin Jungk, Andreas Unterberg, Andreas von Deimling, Aaron Bossler, Joseph Galbraith, Laura Jacobus, Michael Knudson, Tina Knutson, Deqin Ma, Mohammed Milhem, Rita D. Sigmund, Andrew K. Godwin, Rashna Madan, Howard G. Rosenthal, Clement Adebamowo, Sally N. Adebamowo, Alex Boussioutas, David G. Beer, Thomas J. Giordano, Anne‐Marie Mes‐Masson, Fred Saad, Thèrése Bocklage, Lisa M. Landrum, Robert S. Mannel, Kathleen Moore, Katherine Moxley, Russel Postier, Joan Walker, Rosemary E. Zuna, Michael D. Feldman, Federico Valdivieso, Rajiv Dhir, James D. Luketich, Edna M. Mora Pinero, Mario Quintero-Aguilo, Carlos Gilberto Carlotti, José Sebastião dos Santos, Rafael Kemp, Ajith Sankarankuty, Daniela Pretti da Cunha Tirapelli, James W.F. Catto, Kathy Agnew, Elizabeth M. Swisher, Jenette Creaney, Bruce Robinson, Carl Simon Shelley, Eryn M. Godwin, S. DiSean Kendall, Cassaundra Shipman, Carol R. Bradford, Thomas E. Carey, Andrea Haddad, Jeffey Moyer, Lisa A. Peterson, Mark E. Prince, Laura S. Rozek, Gregory T. Wolf, Rayleen V. Bowman, Kwun M. Fong, Ian A. Yang, Robert J. Korst, W. Kimryn Rathmell, J. Leigh Fantacone-Campbell, Jeffrey A. Hooke, Albert J. Kovatich, Craig D. Shriver, John F. DiPersio, Bettina F. Drake, Ramaswamy Govindan, Sharon E. Heath, Timothy J. Ley, Brian A. Van Tine, Peter Westervelt, Mark A. Rubin, Jung Il Lee, Natália Del Angelo Aredes, Armaz Mariamidze
Software Mentions: 8
Published: over 8 years ago

10.3390/toxins13080583

Metaproteomics Reveals Alteration of the Gut Microbiome in Weaned Piglets Due to the Ingestion of the Mycotoxins Deoxynivalenol and Zearalenone
Cited by: 6
Author(s): Johan S. Sáenz, Alina Kurz, Ursula Ruczizka, Moritz Bünger, Maximiliane Dippel, Veronika Nagl, Bertrand Grenier, Andrea Ladinig, Jana Seifert, Evelyne Selberherr
Software Mentions: 8
Published: almost 5 years ago

10.1007/s00122-020-03667-0

Differential expression of transcription factor- and further growth-related genes correlates with contrasting cluster architecture in Vitis vinifera ‘Pinot Noir’ and Vitis spp. genotypes
Cited by: 6
Author(s): Robert Richter, Susanne Rossmann, Doreen Gabriel, Reinhard Töpfer, Klaus Theres, Eva Zyprian
Software Mentions: 8
Published: almost 6 years ago

10.1155/2020/5717498

An Integrated Autophagy-Related Long Noncoding RNA Signature as a Prognostic Biomarker for Human Endometrial Cancer: A Bioinformatics-Based Approach
Cited by: 14
Author(s): Ziwei Wang, Jun Zhang, Yan Liu, Rong Zhao, Xing Zhou, Hongbo Wang
Software Mentions: 8
Published: over 5 years ago

10.1515/tnsci-2021-0004

Calumenin contributes to epithelial-mesenchymal transition and predicts poor survival in glioma
Cited by: 8
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Fei Shi, Aijun Shan
Software Mentions: 8
Published: over 5 years ago

10.1186/s12864-019-6251-7

Changes of intestinal bacterial microbiota in coronary heart disease complicated with nonalcoholic fatty liver disease
Cited by: 33
Author(s): Yiwen Zhang, Jianming Xu, Xuemei Wang, Xinhua Ren, Yulan Liu
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41598-021-92913-6

Ganoderma lucidum promotes sleep through a gut microbiota-dependent and serotonin-involved pathway in mice
Cited by: 14
Author(s): Chunyan Yao, Zhiyuan Wang, Huiyong Jiang, Yan Ren, Qin Huang, Yin Wang, Hui Xie, Ying Zou, Ying Yu, Longxian Lv
Software Mentions: 8
Published: about 5 years ago

10.3390/ijms22073618

Transcriptome Analyses of Myometrium from Fibroid Patients Reveals Phenotypic Differences Compared to Non-Diseased Myometrium
Cited by: 9
Author(s): Emmanuel N. Paul, Gregory W. Burns, Tyler J. Carpenter, Joshua Grey, Asgerally T. Fazleabas, Jose M. Teixeira
Software Mentions: 8
Published: over 5 years ago

10.1186/s12964-019-0397-4

Subtyping of microsatellite instability-high colorectal cancer
Cited by: 28
Author(s): Wangxiong Hu, Yanmei Yang, Ling Qi, Jiani Chen, Weiting Ge, Shu Zheng
Software Mentions: 8
Published: about 7 years ago

10.1186/s12935-020-01560-w

Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
Cited by: 19
Author(s): Cankun Zhou, Chaomei Li, Fangli Yan, Yuhua Zheng
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41418-021-00817-9

Prolonged SARS-CoV-2 RNA virus shedding and lymphopenia are hallmarks of COVID-19 in cancer patients with poor prognosis
Cited by: 27
Author(s): Anne-Gaëlle Goubet, Agathe Dubuisson, Arthur Géraud, F-X. Danlos, Safae Terrisse, Carolina Alves Costa Silva, Damien Drubay, Lea Touri, Marion Picard, Marine Mazzenga, Aymeric Silvin, Garett Dunsmore, Yacine Haddad, Eugénie Pizzato, Pierre Ly, Caroline Flament, Cléa Melenotte, Éric Solary, Michaëla Fontenay, Gabriel Garcia, Corinne Balleyguier, Nathalie Lassau, Markus Maeurer, Claudia Grajeda‐Iglesias, Nitharsshini Nirmalathasan, Fanny Aprahamian, Sylvère Durand, Oliver Kepp, Gladys Ferrere, Cassandra Thelemaque, Imran Lahmar, Jean Eudes Fahrner, Lydia Meziani, Abdelhakim Ahmed–Belkacem, Nadia Saïdani, Bernard La Scola, Didier Raoult, Stéphanie Gentile, Sébastien Cortaredona, Giuseppe Ippolito, Benjamin Lelouvier, Alain Roulet, Fabrice André, Fabrice Barlési, Jean Charles Soria, Caroline Pradon, Emmanuelle Gallois, Fanny Pommeret, Emeline Colomba, Florent Ginhoux, Suzanne Kazandjian, Arielle Elkrief, Bertrand Routy, Makoto Miyara, Guy Gorochov, Éric Deutsch, Laurence Albigès, Annabelle Stoclin, Bertrand Gachot, Anne Florin, Mansouria Merad, Florian Scotté, Souad Assaad, Guido Kroemer, Jean Yves Blay, Aurélien Marabelle, Frank Griscelli, Laurence Zitvogel, Lisa Derosa
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-021-93570-5

Three dimensional modeling of biologically relevant fluid shear stress in human renal tubule cells mimics in vivo transcriptional profiles
Cited by: 18
Author(s): Emily J. Ross, Emily R. Gordon, Hanna Sothers, Roshan Darji, Oakley Baron, Dustin W. Haithcock, Balabhaskar Prabhakarpandian, Kapil Pant, R Myers, Sara J. Cooper, Nancy J. Cox
Software Mentions: 8
Published: about 5 years ago

10.3390/cancers13122955

PLEK2, RRM2, GCSH: A Novel WWOX-Dependent Biomarker Triad of Glioblastoma at the Crossroads of Cytoskeleton Reorganization and Metabolism Alterations
Cited by: 10
Author(s): Żaneta Kałuzińska, Damian Kołat, Andrzej K. Bednarek, Elżbieta Płuciennik
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-020-80840-x

Distinct bacterial community structure and composition along different cowpea producing ecoregions in Northeastern Brazil
Cited by: 7
Author(s): Luciana de Sousa Lopes, Lucas William Mendes, Jadson Emanuel Lopes Antunes, Louise Melo de Souza Oliveira, Vânia Maria Maciel Melo, Arthur Prudêncio de Araújo Pereira, Antônio Félix da Costa, José de Paula Oliveira, Cosme Rafael Martínez, Márcia do Vale Barreto Figueiredo, Ademir Sérgio Ferreira de Araújo
Software Mentions: 8
Published: over 5 years ago

10.1186/s13058-021-01445-4

Single cell transcriptome atlas of mouse mammary epithelial cells across development
Cited by: 19
Author(s): Bhupinder Pal, Yunshun Chen, Michael J. G. Milevskiy, François Vaillant, Lexie Prokopuk, Caleb A. Dawson, Bianca D. Capaldo, Xiaoyu Song, Felicity C. Jackling, Paul Timpson, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-021-87890-9

Epigenetic alteration contributes to the transcriptional reprogramming in T-cell prolymphocytic leukemia
Cited by: 2
Author(s): Shulan Tian, Henan Zhang, Pan Zhang, Michael Kalmbach, Jeong Heon Lee, Tamás Ördög, Paul J. Hampel, Timothy G. Call, Thomas E. Witzig, Neil E. Kay, Eric W. Klee, Susan L. Slager, Huihuang Yan, Wei Ding
Software Mentions: 8
Published: over 5 years ago

10.1186/s12916-020-01867-5

Understanding personalized dynamics to inform precision medicine: a dynamic time warp analysis of 255 depressed inpatients
Cited by: 17
Author(s): Kaat Hebbrecht, Mirella Stuivenga, Tom K. Birkenhäger, Manuel Morrens, Eiko I. Fried, Bernard Sabbe, Erik J. Giltay
Software Mentions: 8
Published: over 5 years ago

10.7717/peerj.7942

A genomic-clinical nomogram predicting recurrence-free survival for patients diagnosed with hepatocellular carcinoma
Cited by: 6
Author(s): Junjie Kong, Tao Wang, Shu Shen, Zifei Zhang, Xianwei Yang, Wentao Wang
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41598-019-40503-y

Sequential conditioning-stimulation reveals distinct gene- and stimulus-specific effects of Type I and II IFN on human macrophage functions
Cited by: 23
Author(s): Quen J. Cheng, Faraz Behzadi, Supriya Sen, Sho Ohta, Roberto Spreafico, Rosane M. B. Teles, Robert L. Modlin, Alexander Hoffmann
Software Mentions: 8
Published: over 7 years ago

10.3389/fcell.2021.710207

Immunological Value of Prognostic Signature Based on Cancer Stem Cell Characteristics in Hepatocellular Carcinoma
Cited by: 14
Author(s): Qianhui Xu, Hao Xu, Shaohuai Chen, Wen Huang
Software Mentions: 8
Published: about 5 years ago

10.1186/s41065-021-00201-0

Identification and validation of hub genes of synovial tissue for patients with osteoarthritis and rheumatoid arthritis
Cited by: 10
Author(s): Yanzhi Ge, Zuxiang Chen, Yanbin Fu, Xue Xiao, Haipeng Xu, Peijian Tong, Li Zhou
Software Mentions: 8
Published: almost 5 years ago

10.1038/s41598-017-06929-y

A systems approach to a spatio-temporal understanding of the drought stress response in maize
Cited by: 64
Author(s): Zhenyan Miao, Zhaoxue Han, Ting Zhang, Siyuan Chen, Chuang Ma
Software Mentions: 8
Published: about 9 years ago

10.3389/fcimb.2020.00194

Delineation and Modulation of the Natural Killer Cell Transcriptome in Rhesus Macaques During ZIKV and SIV Infections
Cited by: 2
Author(s): Malika Aïd, Daniel R. Ram, Steven E. Bosinger, Dan H. Barouch, R. Keith Reeves
Software Mentions: 8
Published: over 6 years ago

10.3390/ijms22094696

Metabolic Profiling of VOCs Emitted by Bacteria Isolated from Pressure Ulcers and Treated with Different Concentrations of Bio-AgNPs
Cited by: 3
Author(s): Fernanda Monedeiro, Viorica Railean, Maciej Monedeiro-Milanowski
Software Mentions: 8
Published: over 5 years ago

10.1099/mgen.0.000627

Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia
Cited by: 8
Author(s): Ido Bar, Prabhakaran Thanjavur Sambasivam, Jenny Davidson, Lina M Farfan-Caceres, Robert C. Lee, Kristy Hobson, Kevin Moore, R Ford
Software Mentions: 8
Published: about 5 years ago

10.1042/BSR20204456

A new m6A methylation-related gene signature for prognostic value in patient with urothelial carcinoma of the bladder
Cited by: 9
Author(s): Bin Zheng, Jianwei Wang, Guiting Zhao, Xiaoxu Chen, Zhongshun Yao, Wei He, Wei He
Software Mentions: 8
Published: over 5 years ago

10.3389/fcell.2021.665869

Enhancing Fatty Acid Catabolism of Macrophages Within Aberrant Breast Cancer Tumor Microenvironment Can Re-establish Antitumor Function
Cited by: 4
Author(s): Yucui Gu, Xingjian Niu, Lei Yin, Yiran Wang, Yue Yang, Xudong Yang, Qingyuan Zhang, Hongfei Ji
Software Mentions: 8
Published: over 5 years ago

10.18632/aging.103947

Autophagy-related long noncoding RNAs can predict prognosis in patients with bladder cancer
Cited by: 11
Author(s): Cong Lai, Zhenyu Wu, Juan Shi, Kaiwen Li, Jiamin Zhu, Zhenhong Chen, Cheng Liu, Kecheng Xu
Software Mentions: 8
Published: almost 6 years ago

10.1186/s13059-018-1435-z

RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum
Cited by: 152
Author(s): Chunhui Ma, Mengqi Chang, Hongyi Lv, Zhiwei Zhang, Weilong Zhang, Xue He, Gaolang Wu, Shuaiyang Zhao, Yao Zhang, Di Wang, Xufei Teng, Chunying Liu, Qing Li, Arne Klungland, Yamei Niu, Shuhui Song, Wei‐Min Tong
Software Mentions: 8
Published: about 8 years ago

10.1093/molbev/msab029

Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes
Cited by: 56
Author(s): Hanpeng Liao, Xi Li, Qiue Yang, Yudan Bai, Peng Cui, Chang Wen, Chen Liu, Zhi Chen, Jiahuan Tang, Jiangang Che, Zhen Yu, Stefan Geisen, Shungui Zhou, Ville‐Petri Friman, Yong‐Guan Zhu
Software Mentions: 8
Published: over 5 years ago

10.3389/fcvm.2020.575275

Reactivation of Atrium Genes Is a Primer for Heart Infarction or Regeneration
Cited by: 1
Author(s): Yang Zhen
Software Mentions: 8
Published: almost 6 years ago

10.1097/MD.0000000000027374

Identification and validation of a hypoxia-related prognostic signature in clear cell renal cell carcinoma patients
Cited by: 7
Author(s): Zhengtian Li, Gang Du, Rong Zhao, Weibo Yang, Chan Li, Jun Huang, Zhenpei Wen, Hening Li, Bo Zhang
Software Mentions: 8
Published: almost 5 years ago

10.18632/aging.103475

Constructing a global transcriptional regulatory landscape for early non-small cell lung cancer to identify hub genes and key pathways
Cited by: 6
Author(s): Jianlong Bu, Pinyi Zhang, Kaibin Zhu, Yubo Yan, Bowen Shi, Junfeng Wang, Shidong Xu
Software Mentions: 8
Published: almost 6 years ago

10.1155/2020/2507074

A Network Pharmacology-Based Identification Study on the Mechanism of Xiao-Xu-Ming Decoction for Cerebral Ischemic Stroke
Cited by: 8
Author(s): Dehui Li, Yifan Su, Cheng-Yi Sun, Huanfang Fan, Weijuan Gao
Software Mentions: 8
Published: almost 6 years ago

10.3389/fonc.2021.642144

Complement C1q (C1qA, C1qB, and C1qC) May Be a Potential Prognostic Factor and an Index of Tumor Microenvironment Remodeling in Osteosarcoma
Cited by: 33
Author(s): Longhao Chen, Jinfu Liu, Yan Lu, Xinyu He, Chi Zhang, Huanyi Zhou
Software Mentions: 8
Published: over 5 years ago

10.1186/s13072-020-00353-9

Distinct and overlapping roles of STAG1 and STAG2 in cohesin localization and gene expression in embryonic stem cells
Cited by: 20
Author(s): Nicole L. Arruda, Zachary Carico, Megan Justice, Ying Frances Liu, Junjie Zhou, Holden C. Stefan, Jill M. Dowen
Software Mentions: 8
Published: about 6 years ago

10.3389/fonc.2021.597447

A Dynamic Transcription Factor Signature Along the Colorectal Adenoma-Carcinoma Sequence in Patients With Co-Occurrent Adenoma and Carcinoma
Cited by: 3
Author(s): Zongfu Pan, Ying He, Wei Zhu, Tao Xu, Xiaoping Hu, Ping Huang
Software Mentions: 8
Published: about 5 years ago

10.3389/fnins.2021.613329

Integrated Transcriptional Profiling Analysis and Immune-Related Risk Model Construction for Intracranial Aneurysm Rupture
Cited by: 4
Author(s): Dezhi Shan, Xing Guo, Guozheng Yang, Zheng He, Rongrong Zhao, Hao Xue, Gang Li
Software Mentions: 8
Published: over 5 years ago

10.1007/s13365-020-00931-3

Transcriptional signatures of Zika virus infection in astrocytes
Cited by: 3
Author(s): Blake Schouest, Tiffany A. Peterson, Dawn Szeltner, Elizabeth A. Scheef, Melody Baddoo, Nathan Ungerleider, Erik K. Flemington, Andrew G. MacLean, Nicholas J. Maness
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2019.01310

Development and Validation of an IDH1-Associated Immune Prognostic Signature for Diffuse Lower-Grade Glioma
Cited by: 31
Author(s): Xiaoyun Deng, Dongdong Lin, Bo Chen, Xiaojia Zhang, Xingxing Xu, Zhisheng Yang, Xuchao Shen, Liang Yang, Xiaoyong Lu, Song Huang, Bo Yin, Nu Zhang, Jian Lin
Software Mentions: 8
Published: over 6 years ago

10.3389/fonc.2021.654388

MYD88 Is a Potential Prognostic Gene and Immune Signature of Tumor Microenvironment for Gliomas
Cited by: 13
Author(s): Qinglong Guo, Xing Xiao, Jinsen Zhang
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2019.01314

An Immune-Related Signature Predicts Survival in Patients With Lung Adenocarcinoma
Cited by: 94
Author(s): Minghui Zhang, Kaibin Zhu, Haihong Pu, Zhuozhong Wang, Hongli Zhao, Jinfeng Zhang, Yan Wang
Software Mentions: 8
Published: over 6 years ago

10.3390/v12090956

Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival
Cited by: 17
Author(s): Allison R. Kolbe, Matthew L. Bendall, Alexander T. Pearson, Doru Paul, Douglas F. Nixon, Marcos Pérez‐Losada, Keith A. Crandall
Software Mentions: 8
Published: almost 6 years ago

10.3389/fonc.2021.625007

Comprehensive Analysis of the Functions and Prognostic Value of RNA-Binding Proteins in Thyroid Cancer
Cited by: 7
Author(s): Yue Ma, Shi Yin, Xiaofeng Liu, Jing Hu, Ning Cai, Xiao-bei Zhang, Fu Li, Xuchen Cao, Yue Yu
Software Mentions: 8
Published: over 5 years ago

10.3390/biom11050695

Variations in Gut Microbiome are Associated with Prognosis of Hypertriglyceridemia-Associated Acute Pancreatitis
Cited by: 10
Author(s): Xiaomin Hu, Liang Gong, Ronggang Zhou, Ziying Han, Ji Li, Yan Zhang, Shuyang Zhang, Dong Wu
Software Mentions: 8
Published: over 5 years ago

10.1002/cam4.4156

Comprehensive analysis of a new prognosis signature based on histone deacetylases in clear cell renal cell carcinoma
Cited by: 6
Author(s): Fajuan Cheng, Bin Zheng, Jianwei Wang, Guiting Zhao, Zhongshun Yao, Zhihong Niu
Software Mentions: 8
Published: about 5 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572