Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0200925

https://doi.org/10.1371/journal.pone.0200925

PNPase knockout results in mtDNA loss and an altered metabolic gene expression program

Cited by: 12
Author(s): Eriko Shimada, Fasih M. Ahsan, Mahta Nili, Dian Huang, Sean Atamdede, Tara TeSlaa, Dana Case, Xiang Yu, Brian D. Gregory, Benjamin J. Perrin, Carla M. Koehler, Michael A. Teitell
Published: over 6 years ago

Software Mentions 8

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: package
package is a package to package your package
Papers that mentioned: 1,300