Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0255169

https://doi.org/10.1371/journal.pone.0255169

SARS-CoV-2 variant evolution in the United States: High accumulation of viral mutations over time likely through serial Founder Events and mutational bursts

Cited by: 25
Author(s): Rafail Nikolaos Tasakis, Georgios Samaras, Anna Jamison, Michelle Lee, Alexandra Paulus, Gabrielle Whitehouse, Laurent Verkoczy, F. Nina Papavasiliou, Marilyn Diaz
Published: over 3 years ago

Software Mentions 8

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: msa
Multiple Sequence Alignment
Papers that mentioned: 50
bioconductor: treeio
Base Classes and Functions for Phylogenetic Tree Input and Output
Papers that mentioned: 32
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
pypi: msa
Maven settings administrator
Papers that mentioned: 50
pypi: pangolin
Papers that mentioned: 29
pypi: script
Help for writing shell scripts in Python
Papers that mentioned: 575
pypi: treeio
A pure python parser for tree data format IO
Papers that mentioned: 32