cran: glmnet | Projects | Ecosyste.ms: Papers

10.3389/fcvm.2021.624714

Identification of Potential Biomarkers and Immune Infiltration Characteristics in Idiopathic Pulmonary Arterial Hypertension Using Bioinformatics Analysis
Cited by: 21
Author(s): Haowei Zeng, Xiaoqin Liu, Yushun Zhang
Software Mentions: 11
Published: over 3 years ago

10.1371/journal.pone.0238026

Funding sources and breast cancer research frame
Cited by: 3
Author(s): Wonkwang Jo
Software Mentions: 11
Published: over 3 years ago

10.3389/fonc.2021.640150

Construction of Competitive Endogenous RNA Network and Verification of 3-Key LncRNA Signature Associated With Distant Metastasis and Poor Prognosis in Patients With Clear Cell Renal Cell Carcinoma
Cited by: 19
Author(s): Yang Su, Tianxiang Zhang, Jiapeng Tang, Li Zhang, Song Fan, Jun Zhou, Chaozhao Liang
Software Mentions: 11
Published: about 3 years ago

10.1002/1878-0261.12134

Tissue glycomics distinguish tumour sites in women with advanced serous adenocarcinoma
Cited by: 21
Author(s): Merrina Anugraham, Francis Jacob, Arun Everest‐Dass, Andreas Schoetzau, Sheri Nixdorf, Neville F. Hacker, Daniel Fink, Viola Heinzelmann‐Schwarz, Nicolle H. Packer
Software Mentions: 11
Published: over 6 years ago

10.3389/fonc.2021.626654

Identification of a Novel Four-Gene Signature Correlated With the Prognosis of Patients With Hepatocellular Carcinoma: A Comprehensive Analysis
Cited by: 7
Author(s): Weihua Zhu, Lixin Ru, Zhenchao Ma
Software Mentions: 11
Published: about 3 years ago

10.1002/1878-0261.12117

Recurrence-associated gene signature optimizes recurrence-free survival prediction of colorectal cancer
Cited by: 37
Author(s): Xianglong Tian, Xiaoqiang Zhu, Tingting Yan, Chuangqi Yu, Chaoqin Shen, Ye Hu, Jie Hong, Haoyan Chen, Jing‐Yuan Fang
Software Mentions: 11
Published: over 6 years ago

10.1186/s12859-018-2264-5

Random forest versus logistic regression: a large-scale benchmark experiment
Cited by: 396
Author(s): Raphäel Couronné, Philipp Probst, Anne‐Laure Boulesteix
Software Mentions: 11
Published: almost 6 years ago

10.3389/fgene.2021.692426

A Ferroptosis-Related Gene Signature Identified as a Novel Prognostic Biomarker for Colon Cancer
Cited by: 15
Author(s): Xin Qi, Rui Wang, Yuxin Lin, Donghui Yan, Jiachen Zuo, Jiajia Chen, Bairong Shen
Software Mentions: 11
Published: almost 3 years ago

10.1042/BSR20210527

Construction of a prognostic model for non-small-cell lung cancer based on ferroptosis-related genes
Cited by: 10
Author(s): Ke Han, Jukun Wang, Kun Qian, Teng Zhao, Xingsheng Liu, Yi Zhang
Software Mentions: 11
Published: about 3 years ago

10.3389/fgene.2019.01380

Germ Cell-Specific Gene 1-Like Protein Regulated by Splicing Factor CUGBP Elav-Like Family Member 5 and Primary Bile Acid Biosynthesis are Prognostic in Glioblastoma Multiforme
Cited by: 6
Author(s): Runzhi Huang, Zhenyu Li, Chen Li, Guanghua Wang, Penghui Yan, Li P, Jiaqi Wang, Xiaolong Zhu, Peng Hu, Junfang Zhang, Zhengyan Chang, Zongqiang Huang, Liming Cheng, Jie Zhang
Software Mentions: 11
Published: over 4 years ago

10.3390/biomedicines8110488

TCox: Correlation-Based Regularization Applied to Colorectal Cancer Survival Data
Cited by: 4
Author(s): Carolina Peixoto, Marta B. Lopes, Marta Martins, Luís Costa, Susana Vinga
Software Mentions: 11
Published: over 3 years ago

10.3389/fpls.2020.588856

So Closely Related and Yet So Different: Strong Contrasts Between the Evolutionary Histories of Species of the Cardamine pratensis Polyploid Complex in Central Europe
Cited by: 16
Author(s): Andrea Melichárková, Marek Šlenker, Judita Zozomová‐Lihová, Katarína Skokanová, Barbora Šingliarová, Tatiana Kačmárová, Michaela Caboňová, Matúš Kempa, Gabriela Šrámková, Terezie Mandáková, Martin Lysák, Marek Svitok, Lenka Mártonfiová, Karol Marhold
Software Mentions: 11
Published: over 3 years ago

10.1038/srep42192

Application of Machine-Learning Models to Predict Tacrolimus Stable Dose in Renal Transplant Recipients
Cited by: 86
Author(s): Jie Tang, Rong Liu, Yueli Zhang, Mou-Ze Liu, HU Yong-fang, Minghai Shao, Lan Zhu, Hua‐Wen Xin, Feng Gao, Wenjun Shang, Xiang‐Gao Meng, Lirong Zhang, Yingzi Ming, Wei Zhang
Software Mentions: 11
Published: over 7 years ago

10.18632/aging.202957

Integrative analysis identifies key mRNA biomarkers for diagnosis, prognosis, and therapeutic targets of HCV-associated hepatocellular carcinoma
Cited by: 8
Author(s): Yongqiang Zhang, Yuqin Tang, Chengbin Guo, Gen Li
Software Mentions: 11
Published: about 3 years ago

10.3390/diagnostics11081517

Prediction Model for Tumor Budding Status Using the Radiomic Features of F-18 Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography in Cervical Cancer
Cited by: 5
Author(s): Gun Oh Chong, Shin‐Hyung Park, Shin Young Jeong, Su Jeong Kim, Nora Jee-Young Park, Yoon Hee Lee, Sang‐Woo Lee, Dae Gy Hong, Ji Young Park, Hyung Soo Han
Software Mentions: 11
Published: over 2 years ago

10.3389/fonc.2021.593587

A Nomogram Combining a Four-Gene Biomarker and Clinical Factors for Predicting Survival of Melanoma
Cited by: 4
Author(s): Chuan Zhang, Dan Dang, Yuqian Wang, Xianling Cong
Software Mentions: 11
Published: about 3 years ago

10.1017/S003329171800315X

A machine learning ensemble to predict treatment outcomes following an Internet intervention for depression
Cited by: 37
Author(s): Rahel Pearson, Derek Pisner, Björn Meyer, Jason Shumake, Christopher G. Beevers
Software Mentions: 11
Published: over 5 years ago

10.3390/diagnostics10030171

GRB10 and E2F3 as Diagnostic Markers of Osteoarthritis and Their Correlation with Immune Infiltration
Cited by: 56
Author(s): Yajun Deng, Enhui Ren, Wenhua Yuan, Guang-Zhi Zhang, Zhi-Xi Wu, Qiqi Xie
Software Mentions: 11
Published: about 4 years ago

10.3389/fphys.2021.714195

Development and Validation of a Prediction Model for Elevated Arterial Stiffness in Chinese Patients With Diabetes Using Machine Learning
Cited by: 5
Author(s): Qingqing Li, Wenhui Xie, Liping Li, Lijing Wang, Qinyi You, Lu Chen, Jing Li, Yilang Ke, Jun Fang, Libin Liu, Huashan Hong
Software Mentions: 11
Published: over 2 years ago

10.1371/journal.pcbi.1007665

CAncer bioMarker Prediction Pipeline (CAMPP)—A standardized framework for the analysis of quantitative biological data
Cited by: 8
Author(s): Thilde Terkelsen, Anders Krogh, Elena Papaleo
Software Mentions: 11
Published: about 4 years ago

10.1080/0886022X.2021.1960563

Derivation and validation of a model to predict acute kidney injury following cardiac surgery in patients with normal renal function
Cited by: 8
Author(s): Penghua Hu, Zhiming Mo, Yuanhan Chen, Yanhua Wu, Li Song, Li Zhang, Zhilian Li, Lei Fu, Huaban Liang, Yiming Tao, Shuangxin Liu, Zhiming Ye, Xinling Liang
Software Mentions: 11
Published: over 3 years ago

10.3389/fonc.2021.672928

Glioma-Associated Stromal Cells Stimulate Glioma Malignancy by Regulating the Tumor Immune Microenvironment
Cited by: 13
Author(s): Xiangming Cai, Feng Yuan, Junhao Zhu, Jin Yang, Chao Tang, Zixiang Cong, Chiyuan Ma
Software Mentions: 11
Published: about 3 years ago

10.3389/fonc.2020.00691

Immunoscore Predicts Survival in Early-Stage Lung Adenocarcinoma Patients
Cited by: 12
Author(s): Zihuan Zhao, Dan Zhao, Jianguo Xia, Yichuan Wang, Buhai Wang
Software Mentions: 11
Published: about 4 years ago

10.3389/pore.2021.1609852

Identification of a Gene Prognostic Model of Gastric Cancer Based on Analysis of Tumor Mutation Burden
Cited by: 9
Author(s): Weijun Ma, Weidong Li, Xu Liu, Lu Liu, Xinbing Yu, Liping Yang, Mingxu Da
Software Mentions: 11
Published: over 2 years ago

10.3389/fmolb.2021.684050

Characterization of Hypoxia-Related Molecular Subtypes in Clear Cell Renal Cell Carcinoma to Aid Immunotherapy and Targeted Therapy via Multi-Omics Analysis
Cited by: 10
Author(s): Weimin Zhong, Hongbin Zhong, Fengling Zhang, Chaoqun Huang, Yao Lin, Jian Huang
Software Mentions: 11
Published: almost 3 years ago

10.1186/s12935-021-01795-1

Identification and development of a novel invasion-related gene signature for prognosis prediction in colon adenocarcinoma
Cited by: 15
Author(s): Jiahua Liu, Chunhui Jiang, Chunjie Xu, Dongyang Wang, Ya Shen, Ye Liu, Lei Gu
Software Mentions: 11
Published: over 3 years ago

10.1186/s12935-020-01393-7

Small nucleolar RNAs signature (SNORS) identified clinical outcome and prognosis of bladder cancer (BLCA)
Cited by: 5
Author(s): Rui Cao, Bo Ma, Lushun Yuan, Gang Wang, Ye Tian
Software Mentions: 11
Published: almost 4 years ago

10.3389/fonc.2021.614052

MRI Radiomics Signature as a Potential Biomarker for Predicting KRAS Status in Locally Advanced Rectal Cancer Patients
Cited by: 9
Author(s): Zhiyuan Zhang, Lijun Shen, Yan Wang, Jiazhou Wang, Hui Zhang, Xuesen Fan, Juefeng Wan
Software Mentions: 11
Published: about 3 years ago

10.1002/sim.8116

Correlation‐adjusted regression survival scores for high‐dimensional variable selection
Cited by: 10
Author(s): Thomas Welchowski, Verena Zuber, Matthias Schmid
Software Mentions: 11
Published: about 5 years ago

10.3389/fimmu.2020.612784

Integrated Analysis of the ETS Family in Melanoma Reveals a Regulatory Role of ETV7 in the Immune Microenvironment
Cited by: 14
Author(s): Hui Qü, Hui Zhao, Xi Zhang, Yang Liu, Feng Li, Li-Yan Sun, Zewen Song
Software Mentions: 11
Published: over 3 years ago

10.1002/1878-0261.12850

High‐throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype‐specific serologically relevant biomarkers
Cited by: 13
Author(s): Thilde Terkelsen, Maria Pernemalm, Pavel Gromov, Anna‐Lise Børresen‐Dale, Anders Krogh, Vilde Drageset Haakensen, Janne Lethiö, Elena Papaleo, Irina Gromova
Software Mentions: 10
Published: over 3 years ago

10.1093/biostatistics/kxz034

Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes
Cited by: 10
Author(s): Britta Velten, Wolfgang Huber
Software Mentions: 10
Published: over 4 years ago

10.1371/journal.pone.0127816

HIV-1 Coreceptor Usage Assessment by Ultra-Deep Pyrosequencing and Response to Maraviroc
Cited by: 3
Author(s): Christophe Rodriguez, Cathia Soulié, Anne–Geneviève Marcelin, Vincent Cálvez, Diane Descamps, Charlotte Charpentier, Philippe Flandre, Patrícia Recordon-Pinson, Pantxika Bellecave, Jean‐Michel Pawlotsky, Bernard Masquelier
Software Mentions: 10
Published: almost 9 years ago

10.1002/1878-0261.12747

Identification and validation of a combined hypoxia and immune index for triple‐negative breast cancer
Cited by: 57
Author(s): Shaoquan Zheng, Yutian Zou, Jie Liang, Weikai Xiao, Anli Yang, Tiebao Meng, Shilin Lu, Zhong-Bing Luo, Xiaoming Xie
Software Mentions: 10
Published: almost 4 years ago

10.3389/fonc.2021.747300

High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer
Cited by: 2
Author(s): Xinkui Liu, Yang Wu, Yingying Zhang, Dechao Bu, Chao Wu, Shan Lu, Zhihong Huang, Yurong Song, Yi Zhao, Fengying Guo, Peizhi Ye, Changgeng Fu, Liangliang Shen, Jingyuan Zhang, Haojia Wang, Xianchun Duan, Jiarui Wu
Software Mentions: 10
Published: over 2 years ago

10.3389/fonc.2021.729103

Identification of Iron Metabolism-Related Genes as Prognostic Indicators for Lower-Grade Glioma
Cited by: 17
Author(s): Shenbin Xu, Zefeng Wang, Juan Ye, Shuhao Mei, Jianmin Zhang
Software Mentions: 10
Published: over 2 years ago

10.18632/aging.103517

Identifying CpG methylation signature as a promising biomarker for recurrence and immunotherapy in non–small-cell lung carcinoma
Cited by: 13
Author(s): Ruihan Luo, Song Jing, Xiao Xiao, Zhengbo Xie, Zhuochen Zhao, Wanfeng Zhang, Shiqi Miao, Yongyao Tang, Longke Ran
Software Mentions: 10
Published: almost 4 years ago

10.3389/fgene.2021.739520

Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes
Cited by: 6
Author(s): Min Liang, Mafeng Chen, Yao Zhong, Satwant Singh, Sandeep Singh
Software Mentions: 10
Published: over 2 years ago

10.1371/journal.pone.0194085

Predicting urinary tract infections in the emergency department with machine learning
Cited by: 112
Author(s): Richard A. Taylor, Christopher L. Moore, Kei‐Hoi Cheung, Cynthia Brandt
Software Mentions: 10
Published: about 6 years ago

10.1371/journal.pone.0222603

Clinical correlates of workplace injury occurrence and recurrence in adults
Cited by: 1
Author(s): Zhaoyi Chen, Mattia Prosperi, Jiang Bian, Jae Min, Mo Wang, Chang Li
Software Mentions: 10
Published: over 4 years ago

10.1097/MD.0000000000026068

MiRNA-based model for predicting the TMB level in colon adenocarcinoma based on a LASSO logistic regression method
Cited by: 1
Author(s): Zhengtian Li, Lingling Jiang, Rong Zhao, Jun Huang, Weibo Yang, Zhenpei Wen, Bo Zhang, Gang Du
Software Mentions: 10
Published: almost 3 years ago

10.7150/ijms.53602

Development and validation of a comprehensive radiomics nomogram for prognostic prediction of primary hepatic sarcomatoid carcinoma after surgical resection
Cited by: 5
Author(s): Youyin Tang, Tao Zhang, Ying Zhao, Zhe-Yu Chen, Xuelei Ma
Software Mentions: 10
Published: over 3 years ago

10.1155/2020/1468980

Construction and Analysis of lncRNA-Mediated ceRNA Network in Nasopharyngeal Carcinoma Based on Weighted Correlation Network Analysis
Cited by: 7
Author(s): Zhenning Zou, Shuguang Liu, Yanping Ha, Bowan Huang
Software Mentions: 10
Published: over 3 years ago

10.7717/peerj.9624

Genome‐wide identification of CpG island methylator phenotype related gene signature as a novel prognostic biomarker of gastric cancer
Cited by: 12
Author(s): Zhi Zeng, Daxing Xie, Jianping Gong
Software Mentions: 10
Published: almost 4 years ago

10.1038/s42003-020-1087-x

Combining host-derived biomarkers with patient characteristics improves signature performance in predicting tuberculosis treatment outcomes
Cited by: 12
Author(s): Dhanasekaran Sivakumaran, Synne Jenum, Mário Vaz, Sumithra Selvam, Tom H. M. Ottenhoff, Mariëlle C. Haks, Stephanus T. Malherbe, Nancy Devlin, Christian Ritz, Harleen M. S. Grewal
Software Mentions: 10
Published: almost 4 years ago

10.1038/s41598-021-81110-0

G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes
Cited by: 9
Author(s): Françoise Le Borgne, Arthur Chatton, Maxime Léger, Rémi Lenain, Yohann Foucher
Software Mentions: 10
Published: over 3 years ago

10.7717/peerj.6061

Development and internal validation of a nine-lncRNA prognostic signature for prediction of overall survival in colorectal cancer patients
Cited by: 11
Author(s): Zhiqiao Zhang, Qingbo Liu, Peng Wang, Jing Li, Tingshan He, Yanling Ouyang, Yiyan Huang, Weidong Wang
Software Mentions: 10
Published: over 5 years ago

10.18632/aging.102434

Development and validation of a metastasis-associated prognostic signature based on single-cell RNA-seq in clear cell renal cell carcinoma
Cited by: 28
Author(s): Chuanjie Zhang, Hongchao He, Xin Hu, Ao Liu, Da Huang, Yu Xu, Lu Chen, Danfeng Xu
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-020-66650-1

Predicting dengue importation into Europe, using machine learning and model-agnostic methods
Cited by: 17
Author(s): Donald Salami, Carla Sousa, Maria do Rosário Oliveira Martins, César Capinha
Software Mentions: 10
Published: almost 4 years ago

10.1002/cam4.4117

A comprehensive analysis of immune infiltration in the tumor microenvironment of osteosarcoma
Cited by: 17
Author(s): Hao Yang, Liang Zhao, Yang Zhang, Fangfang Li
Software Mentions: 10
Published: almost 3 years ago

10.1126/sciadv.abc3781

Extensive tissue-specific expression variation and novel regulators underlying circadian behavior
Cited by: 21
Author(s): Maria Litovchenko, Antonio C. A. Meireles-Filho, Michael Frochaux, R. Bevers, Alessio Prunotto, Ane Martín Anduaga, Brian Hollis, Vincent Gardeux, Virginie Braman, Julie Russeil, Sebastián Kadener, Matteo Dal Peraro, Bart Deplancke
Software Mentions: 10
Published: over 3 years ago

10.1038/s41598-017-05505-8

Machine Learning Algorithms for Risk Prediction of Severe Hand-Foot-Mouth Disease in Children
Cited by: 15
Author(s): Bin Zhang, Xiang Wan, Fu Ouyang, Yu Dong, Dehui Luo, Jing Liu, Long Liang, Wen Bo Chen, Xiao Luo, Xiao Mo, Lu Zhang, Wen Hui Huang, Shu Fang Pei, Bao Liang Guo, Chun Liang, Long Zhou, Shui Xing Zhang
Software Mentions: 10
Published: almost 7 years ago

10.3389/fonc.2021.644956

A New Oxaliplatin Resistance-Related Gene Signature With Strong Predicting Ability in Colon Cancer Identified by Comprehensive Profiling
Cited by: 6
Author(s): Qiu Sheng Lin, Liang Luo, Hua Wang
Software Mentions: 10
Published: about 3 years ago

10.1007/s00262-020-02817-z

Immune signature-based risk stratification and prediction of immune checkpoint inhibitor’s efficacy for lung adenocarcinoma
Cited by: 85
Author(s): Ming Yi, An‐Ping Li, Linghui Zhou, Qian Chu, Suxia Luo, Kongming Wu
Software Mentions: 10
Published: over 3 years ago

10.5334/aogh.3278

Derivation of a Contextually-Appropriate COVID-19 Mortality Scale for Low-Resource Settings
Cited by: 5
Author(s): Jennifer L Pigoga, Yasein Omer, Lee Wallis
Software Mentions: 10
Published: about 3 years ago

10.1002/cam4.3632

Analyzing and predicting the LNM rate and prognosis of patients with intraductal papillary mucinous neoplasm of the pancreas
Cited by: 1
Author(s): Chao‐Tao Tang, Bi‐Xia Liu, Youxiang Chen, Chunyan Zeng
Software Mentions: 10
Published: about 3 years ago

10.1007/s00125-018-4641-z

Multiplex proteomics for prediction of major cardiovascular events in type 2 diabetes
Cited by: 38
Author(s): Christoph Nowak, Axel C. Carlsson, Carl Johan Östgren, Fredrik Nyström, Moudud Alam, Tobias Feldreich, Johan Sundström, Juan-Jesús Carrero, Jerzy Leppert, Pär Hedberg, Egil Henriksen, A. C. C. Cordeiro, Vilmantas Giedraitis, Lars Lind, Erik Ingelsson, Tove Fall, Johan Ärnlöv
Software Mentions: 10
Published: almost 6 years ago

10.3389/fonc.2020.01196

Radiomics Analysis on Multiphase Contrast-Enhanced CT: A Survival Prediction Tool in Patients With Hepatocellular Carcinoma Undergoing Transarterial Chemoembolization
Cited by: 28
Author(s): Xiang-Pan Meng, Yuancheng Wang, Shenghong Ju, Chun-Qiang Lu, Bin Zhong, Ni Chen, Qi Zhang, Qian Yu, Jingyi Xu, JianSong Ji, Xiuming Zhang, Tianyu Tang, Guanyu Yang, Ziteng Zhao
Software Mentions: 10
Published: almost 4 years ago

10.1155/2021/1031906

Development of a Ferroptosis-Related lncRNA Signature to Predict the Prognosis and Immune Landscape of Bladder Cancer
Cited by: 14
Author(s): Ranran Zhou, Jingjing Liang, Haijun Tian, Qi Chen, Cheng Yang, Cundong Liu
Software Mentions: 10
Published: almost 3 years ago

10.3389/fonc.2020.01710

Prognostic Implications of Metabolism Related Gene Signature in Cutaneous Melanoma
Cited by: 14
Author(s): Furong Zeng, Juan Su, Cong Peng, Mengting Liao, Shuang Zhao, Ying Guo, Xiang Chen, Guangtong Deng
Software Mentions: 10
Published: over 3 years ago

10.1186/s12935-019-0890-2

Comprehensive bioinformatics analysis reveals potential lncRNA biomarkers for overall survival in patients with hepatocellular carcinoma: an on-line individual risk calculator based on TCGA cohort
Cited by: 19
Author(s): Zhiqiao Zhang, Yanling Ouyang, Yiyan Huang, Peng Wang, Jing Li, Tingshan He, Qingbo Liu
Software Mentions: 10
Published: almost 5 years ago

10.1038/s41598-021-96236-4

A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma
Cited by: 5
Author(s): Yang Liu, Qiuhong Wu, Xuejiao Fan, Wen Li, Yong Li, Hui Zhu, Qinghua Zhou, Jinming Yu
Software Mentions: 10
Published: almost 3 years ago

10.3389/fmolb.2021.692530

Ferroptosis-Related Gene Signature and Patterns of Immune Infiltration Predict the Overall Survival in Patients With Lung Adenocarcinoma
Cited by: 5
Author(s): Yuxuan Wang, Weikang Chen, Minqi Zhu, Lei Xian
Software Mentions: 10
Published: almost 3 years ago

10.1155/2021/5567392

Construction and Validation of a Novel Prognostic Signature for Intestinal Type of Gastric Cancer
Cited by: 3
Author(s): Fan Zhang, Ewetse Paul Maswikiti, Yucai Wei, Wenzhang Wu, Yumin Li
Software Mentions: 10
Published: almost 3 years ago

10.1371/journal.pgen.1008766

Simultaneous SNP selection and adjustment for population structure in high dimensional prediction models
Cited by: 5
Author(s): Sahir Bhatnagar, Yi Yang, Tianyuan Lu, Erwin Schurr, J. Concepción Loredo-Osti, Marie Forest, Karim Oualkacha, Celia M.T. Greenwood
Software Mentions: 10
Published: about 4 years ago

10.1371/journal.pone.0254394

Claims-based algorithms for common chronic conditions were efficiently constructed using machine learning methods
Cited by: 0
Author(s): Kozo Hara, Yasuki Kobayashi, Jun Tomio, Yuki Ito, Thomas Svensson, Ryo Ikesu, Ung‐il Chung, Akiko Kishi Svensson
Software Mentions: 10
Published: over 2 years ago

10.1155/2021/6365459

Identification of a Pyroptosis-Related Gene Signature for Prediction of Overall Survival in Lung Adenocarcinoma
Cited by: 14
Author(s): Donghai Zheng, Lv Bian, Minglang Wang, Luoqing Wang, Yilian Wang
Software Mentions: 10
Published: over 2 years ago

10.3390/cells10050977

Identification of 15 lncRNAs Signature for Predicting Survival Benefit of Advanced Melanoma Patients Treated with Anti-PD-1 Monotherapy
Cited by: 22
Author(s): Jianguo Zhou, Bo Liang, Jianguo Liu, Sanli Jin, Sisi He, Benjamin Frey, Ning Gu, Rainer Fietkau, Markus Hecht, Hu Ma, Udo S. Gaipl
Software Mentions: 10
Published: about 3 years ago

10.18632/aging.104014

Identification of a nomogram based on an 8-lncRNA signature as a novel diagnostic biomarker for head and neck squamous cell carcinoma
Cited by: 10
Author(s): Rui Mao, Yuanyuan Chen, Lei Xiong, Yanjun Liu, Tongtong Zhang
Software Mentions: 10
Published: over 3 years ago

10.18632/aging.202279

Exploration of the immune cell infiltration-related gene signature in the prognosis of melanoma
Cited by: 19
Author(s): Yongquan Zeng, Yue Zeng, Hang Yin, Fengxia Chen, Qingqing Wang, Xiaoyan Yu, Youwen Zhou
Software Mentions: 10
Published: over 3 years ago

10.1186/s12957-021-02162-0

The preoperative prognostic value of the radiomics nomogram based on CT combined with machine learning in patients with intrahepatic cholangiocarcinoma
Cited by: 16
Author(s): Youyin Tang, Tao Zhang, Xianghong Zhou, Ying Zhao, Hanyue Xu, Yichun Liu, Hang Wang, Zheyu Chen, Xuelei Ma
Software Mentions: 10
Published: almost 3 years ago

10.1186/s12916-020-01595-w

Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection
Cited by: 30
Author(s): Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao, Tianlu Chen, Yixing Wang, Hua Zhang, Zhun Xiao, Xin-Zhu Liu, Youping Deng, Linda L. Wong, Cynthia Rajani, Sandi A. Kwee, Hua Bian, Xin Gao, Ping Liu, Jia Wang
Software Mentions: 10
Published: almost 4 years ago

10.3389/fcell.2021.731790

Identification and Validation of a Nine-Gene Amino Acid Metabolism-Related Risk Signature in HCC
Cited by: 34
Author(s): Yajuan Zhao, Junli Zhang, Shuhan Wang, Qianqian Jiang, Ke Xu
Software Mentions: 10
Published: over 2 years ago

10.1186/s13059-016-0999-8

Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxia
Cited by: 64
Author(s): Syed Haider, Alan McIntyre, Ruud G.P.M. van Stiphout, Laura Winchester, Simon Wigfield, Adrian L. Harris, Francesca M. Buffa
Software Mentions: 10
Published: almost 8 years ago

10.1001/jamanetworkopen.2021.14162

Association of Copy Number Variation Signature and Survival in Patients With Serous Ovarian Cancer
Cited by: 14
Author(s): Ryon P. Graf, Ramez N. Eskander, Leo Brueggeman, Dwayne G. Stupack
Software Mentions: 10
Published: almost 3 years ago

10.1001/jamanetworkopen.2021.10703

Comparative Effectiveness of Machine Learning Approaches for Predicting Gastrointestinal Bleeds in Patients Receiving Antithrombotic Treatment
Cited by: 13
Author(s): Jeph Herrin, Neena S. Abraham, Xiaoxi Yao, Peter A. Noseworthy, Jonathan Inselman, Nilay D. Shah, Che Ngufor
Software Mentions: 10
Published: almost 3 years ago

10.1172/jci.insight.147535

The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2–infected patients by sex and age
Cited by: 12
Author(s): Paula Paccielli Freire, Amélia Pasqual Marques, G. Baiocchi, Lena F. Schimke, Dennyson Leandro M. Fonseca, Ranieri Coelho Salgado, Igor Salerno Filgueiras, Sarah M.S. Napoleao, Desirée Rodrigues Plaça, Karen Tiemi Akashi, Thiago Dominguez Crespo Hirata, Nadia El Khawanky, Lasse Melvær Giil, Gustavo Cabral-Miranda, Robson Francisco Carvalho, Luís Carlos S. Ferreira, Antônio Condino‐Neto, Helder I. Nakaya, Igor Jurišica, Hans D. Ochs, Niels Olsen Saraiva Câmara, Vera Lúcia Garcia Calich, Otávio Cabral-Marques
Software Mentions: 10
Published: almost 3 years ago

10.3390/jcm8091298

Comparison of Machine Learning Techniques for Prediction of Hospitalization in Heart Failure Patients
Cited by: 32
Author(s): Giulia Lorenzoni, Stefano Santo Sabato, Corrado Lanera, Daniele Bottigliengo, Clara Minto, Honoria Ocagli, Paola De Paolis, Darío Gregori, Sabino Iliceto, Franco Pisanò
Software Mentions: 10
Published: over 4 years ago

10.1534/g3.117.300131

CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large-Scale Sequencing Data
Cited by: 12
Author(s): Markku Kuismin, Jon Ahlinder, Mikko Sillanpää
Software Mentions: 10
Published: over 6 years ago

10.3389/fbioe.2019.00270

Identification of Prognostic and Metastatic Alternative Splicing Signatures in Kidney Renal Clear Cell Carcinoma
Cited by: 46
Author(s): Tong Meng, Runzhi Huang, Zhiwei Zeng, Zongqiang Huang, Huabin Yin, Chenchen Jiao, Penghui Yan, Peng Hu, Xiaolong Zhu, Zhenyu Li, Dianwen Song, Jie Zhang, Liming Cheng
Software Mentions: 10
Published: over 4 years ago

10.3389/fcell.2021.722841

Classification of Estrogen Receptor-Positive Breast Cancer Based on Immunogenomic Profiling and Validation at Single-Cell Resolution
Cited by: 0
Author(s): Xianxiong Ma, Hengyu Chen, Ming Yang, Zunxiang Ke, Mengyi Wang, Tao Huang, Lei Li
Software Mentions: 10
Published: over 2 years ago

10.1111/jcmm.14918

An outcome model for human bladder cancer: A comprehensive study based on weighted gene co‐expression network analysis
Cited by: 24
Author(s): Yaoyi Xiong, Lushun Yuan, Jing Xiong, Huimin Xu, Yongwen Luo, Gang Wang, Lingao Ju, Yu Xiao, Xinghuan Wang
Software Mentions: 10
Published: over 4 years ago

10.3389/fcell.2021.649265

Multi-Omics Analysis of Anlotinib in Pancreatic Cancer and Development of an Anlotinib-Related Prognostic Signature
Cited by: 4
Author(s): Xi Zhang, Yang Liu, Zhen Zhang, Juan Tan, Junjun Zhang, Hao Ou, Jie Li, Zewen Song
Software Mentions: 10
Published: about 3 years ago

10.3389/fgene.2021.695130

A Novel Signature Constructed by Immune-Related LncRNA Predicts the Immune Landscape of Colorectal Cancer
Cited by: 7
Author(s): Mengyu Sun, Tongyue Zhang, Yijun Wang, Wenjie Huang, Limin Xia
Software Mentions: 10
Published: almost 3 years ago

10.3389/fgene.2021.663617

Multi-Omics Data Analyses Construct a Six Immune-Related Genes Prognostic Model for Cervical Cancer in Tumor Microenvironment
Cited by: 10
Author(s): Fangfang Xu, Jiacheng Shen, Shaohua Xu
Software Mentions: 9
Published: almost 3 years ago

10.1111/jcmm.14767

An EMT‐related gene signature for the prognosis of human bladder cancer
Cited by: 113
Author(s): Rui Cao, Lushun Yuan, Bo Ma, Gang Wang, Wei Qiu, Ye Tian
Software Mentions: 9
Published: over 4 years ago

10.1111/eva.13296

Ageing European lobsters (<i>Homarus gammarus</i>) using DNA methylation of evolutionarily conserved ribosomal DNA
Cited by: 8
Author(s): Eleanor A. Fairfield, David S. Richardson, Carly L. Daniels, Christopher L. Butler, Ewen Bell, Martin I. Taylor
Software Mentions: 9
Published: over 2 years ago

10.1093/jamia/ocab068

Stroke risk prediction using machine learning: a prospective cohort study of 0.5 million Chinese adults
Cited by: 26
Author(s): Matthew Chun, Robert Clarke, Benjamin J. Cairns, David A. Clifton, Derrick Bennett, Yiping Chen, Yu Guo, Pei Pei, Jun Lv, Canqing Yu, Ling Yang, Liming Li, Zhengming Chen, Tingting Zhu
Software Mentions: 9
Published: about 3 years ago

10.3389/fbioe.2019.00257

The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Mesothelioma With Bone Metastasis
Cited by: 23
Author(s): Runzhi Huang, Jiawen Wu, Zixuan Zheng, Guanghua Wang, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Haiyun Wang, Qi Lv, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 9
Published: over 4 years ago

10.3389/fcell.2021.653240

CARD-Associated Risk Score Features the Immune Landscape and Predicts the Responsiveness to Anti-PD-1 Therapy in IDH Wild-Type Gliomas
Cited by: 2
Author(s): De-Pei Li, Wanming Hu, Xiaoping Lin, Ji Zhang, Zhenqiang He, Sheng Zhong, Xiaozhong Wen, Peiyu Zhang, Xiaobing Jiang, Hao Duan, Chengcheng Guo, Jian Wang, Jing Zeng, Zhongping Chen, Yonggao Mou, Ke Sai
Software Mentions: 9
Published: about 3 years ago

10.1186/s13059-019-1697-0

WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants
Cited by: 10
Author(s): Laurent Gentzbittel, Cécile Ben, Mélanie Mazurier, Min-Gyoung Shin, Todd C. Lorenz, Martina Rickauer, Paul Marjoram, Sergey V. Nuzhdin, Tatiana V. Tatarinova
Software Mentions: 9
Published: almost 5 years ago

10.1186/s13059-018-1414-4

QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data
Cited by: 140
Author(s): Kevin C.H. Ha, Benjamin J. Blencowe, Quaid Morris
Software Mentions: 9
Published: about 6 years ago

10.3389/fcell.2021.718624

Identification of a Novel Prognostic Gene Signature From the Immune Cell Infiltration Landscape of Osteosarcoma
Cited by: 15
Author(s): Lei Fan, Jingtao Ru, Tao Liu, Chi Ma
Software Mentions: 9
Published: over 2 years ago

10.1186/gb-2014-15-3-r47

Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines
Cited by: 571
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 9
Published: about 10 years ago

10.3389/fncom.2021.674028

Accurate Prediction of Children's ADHD Severity Using Family Burden Information: A Neural Lasso Approach
Cited by: 1
Author(s): Juan C. Laria, David Delgado-Gómez, Inmaculada Peñuelas-Calvo, Enrique Baca‐García, Rosa E. Lillo
Software Mentions: 9
Published: almost 3 years ago

10.3389/fgene.2021.661988

Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma
Cited by: 12
Author(s): Xingte Chen, Lei Wang, Liang Hong, Zhiying Su, Xiaohong Zhong, Han Zhou, Xueqing Zhang, Junxin Wang, Lingdong Shao
Software Mentions: 9
Published: almost 3 years ago

10.3389/fendo.2021.538364

Prognostic Alternative mRNA Splicing in Adrenocortical Carcinoma
Cited by: 4
Author(s): Weiwei Liang, Fangfang Sun
Software Mentions: 9
Published: about 3 years ago

10.18632/aging.102847

Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma
Cited by: 21
Author(s): Hao Gu, Zhang Chao, Jia Guo, Min Yang, Hongshan Zhong, Wei Jin, Yang Liu, Liping Gao, Renxiong Wei
Software Mentions: 9
Published: about 4 years ago

10.1186/s12859-015-0537-9

A strategy to build and validate a prognostic biomarker model based on RT-qPCR gene expression and clinical covariates
Cited by: 6
Author(s): Maud Tournoud, Audrey Larue, Marie-Angélique Cazalis, Fabienne Venet, Alexandre Pachot, Guillaume Monneret, Alain Lepape, Jean‐Baptiste Veyrieras
Software Mentions: 9
Published: about 9 years ago

10.3390/ijms161226230

MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma
Cited by: 12
Author(s): Steffen Sass, Adriana Pitea, Kristian Unger, Julia Heß, Nikola S. Mueller, Fabian J. Theis
Software Mentions: 9
Published: over 8 years ago

Projects: cran: glmnet

Papers Mentioning glmnet 1,607