Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1126/sciadv.abc3781

https://doi.org/10.1126/sciadv.abc3781

Extensive tissue-specific expression variation and novel regulators underlying circadian behavior

Cited by: 21
Author(s): Maria Litovchenko, Antonio C. A. Meireles-Filho, Michael Frochaux, R. Bevers, Alessio Prunotto, Ane Martín Anduaga, Brian Hollis, Vincent Gardeux, Virginie Braman, Julie Russeil, Sebastián Kadener, Matteo Dal Peraro, Bart Deplancke
Published: almost 4 years ago

Software Mentions 10

bioconductor: GENIE3
GEne Network Inference with Ensemble of trees
Papers that mentioned: 172
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: neuralnet
Training of Neural Networks
Papers that mentioned: 37
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: neuralnet
A high-level library on top of Theano.
Papers that mentioned: 37