Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: glmnet
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
51 versions
Latest release: 9 months ago
531 dependent packages
128,740 downloads last month
Papers Mentioning glmnet 1,607
10.1186/s13059-018-1414-4
QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq dataCited by: 140
Author(s): Kevin C.H. Ha, Benjamin J. Blencowe, Quaid Morris
Software Mentions: 9
Published: about 6 years ago
10.1186/s13059-019-1697-0
WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plantsCited by: 10
Author(s): Laurent Gentzbittel, Cécile Ben, Mélanie Mazurier, Min-Gyoung Shin, Todd C. Lorenz, Martina Rickauer, Paul Marjoram, Sergey V. Nuzhdin, Tatiana V. Tatarinova
Software Mentions: 9
Published: almost 5 years ago
10.1186/s12890-021-01588-2
A novel ferroptosis-related genes model for prognosis prediction of lung adenocarcinomaCited by: 9
Author(s): Fēi Li, Dongcen Ge, Shulan Sun
Software Mentions: 9
Published: almost 3 years ago
10.3390/cancers13040917
Novel Gene Signatures Predictive of Patient Recurrence-Free Survival and Castration Resistance in Prostate CancerCited by: 18
Author(s): Jun Ai, Baotong Zhang, Zhiqian Zhang, Hailiang Hu, Jiangtao Dong
Software Mentions: 9
Published: about 3 years ago
10.1371/journal.pone.0095224
Two-Stage, In Silico Deconvolution of the Lymphocyte Compartment of the Peripheral Whole Blood Transcriptome in the Context of Acute Kidney Allograft RejectionCited by: 18
Author(s): Casey P. Shannon, Robert Balshaw, Raymond T. Ng, J. Wilson-McManus, Paul Keown, Robert McMaster, Bruce M. McManus, David Landsberg, Nicole M. Isbel, Greg Knoll, Scott J. Tebbutt
Software Mentions: 9
Published: about 10 years ago
10.18632/aging.102424
The construction and analysis of tumor-infiltrating immune cell and ceRNA networks in recurrent soft tissue sarcomaCited by: 29
Author(s): Runzhi Huang, Tong Meng, Rui Chen, Penghui Yan, Jie Zhang, Peng Hu, Xiaolong Zhu, Huabin Yin, Dianwen Song, Zongqiang Huang
Software Mentions: 9
Published: over 4 years ago
10.3389/fncom.2021.674028
Accurate Prediction of Children's ADHD Severity Using Family Burden Information: A Neural Lasso ApproachCited by: 1
Author(s): Juan C. Laria, David Delgado-Gómez, Inmaculada Peñuelas-Calvo, Enrique Baca‐García, Rosa E. Lillo
Software Mentions: 9
Published: almost 3 years ago
10.1186/gb-2014-15-3-r47
Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell linesCited by: 571
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 9
Published: about 10 years ago
10.3389/fendo.2021.538364
Prognostic Alternative mRNA Splicing in Adrenocortical CarcinomaCited by: 4
Author(s): Weiwei Liang, Fangfang Sun
Software Mentions: 9
Published: about 3 years ago
10.1042/BSR20201820
Immune-related miRNA signature identifies prognosis and immune landscape in head and neck squamous cell carcinomasCited by: 6
Author(s): Bo Ma, Hui Li, Jie Qiao, Tao Meng, Riyue Yu
Software Mentions: 9
Published: over 3 years ago
10.1155/2021/6657397
Identifying Stage II Colorectal Cancer Recurrence Associated Genes by Microarray Meta-Analysis and Building Predictive Models with Machine Learning AlgorithmsCited by: 2
Author(s): Wei Lu, Xiang Pan, Siqi Dai, Dongliang Fu, Maxwell Hwang, Yaowu Zhu, Lina Zhang, Jingsun Wei, Xianglong Kong, Jun Li, Qian Xiao, Kefeng Ding
Software Mentions: 9
Published: over 3 years ago
10.3389/fphar.2021.746910
Spermine-Related DNA Hypermethylation and Elevated Expression of Genes for Collagen Formation are Susceptible Factors for Chemotherapy-Induced Hand-Foot Syndrome in Chinese Colorectal Cancer PatientsCited by: 3
Author(s): Mingming Li, Jiani Chen, Shaoqun Liu, Xiaomeng Sun, Huilin Xu, Qianmin Gao, Xintao Chen, Chaowen Xi, Doudou Huang, Yi Deng, Feng zhang, Shouhong Gao, Shi Qiu, Xin Tao, Jingwen Zhai, Hua Wei, Houshan Yao, Wansheng Chen
Software Mentions: 9
Published: over 2 years ago
10.2196/26823
Predicting Biologic Therapy Outcome of Patients With Spondyloarthritis: Joint Models for Longitudinal and Survival AnalysisCited by: 3
Author(s): Carolina Barata, Ana Maria Rodrigues, Helena Canhão, Susana Vinga, Alexandra M. Carvalho
Software Mentions: 9
Published: almost 3 years ago
10.1002/jia2.25467
Super learner analysis of real‐time electronically monitored adherence to antiretroviral therapy under constrained optimization and comparison to non‐differentiated care approaches for persons living with HIV in rural UgandaCited by: 10
Author(s): Alejandra Benitez, Nicholas Musinguzi, David R. Bangsberg, Mwebesa Bwana, Conrad Muzoora, Peter W. Hunt, Jeffrey N. Martin, Jessica Haberer, Maya Petersen
Software Mentions: 9
Published: about 4 years ago
10.18632/aging.104064
Clinical and prognostic pan-cancer analysis of m6A RNA methylation regulators in four types of endocrine system tumorsCited by: 29
Author(s): Kai Li, Hui Luo, Hui Luo, Xiao Zhu
Software Mentions: 9
Published: over 3 years ago
10.3390/ijms161226230
MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell CarcinomaCited by: 12
Author(s): Steffen Sass, Adriana Pitea, Kristian Unger, Julia Heß, Nikola S. Mueller, Fabian J. Theis
Software Mentions: 9
Published: over 8 years ago
10.18632/aging.202748
Development and validation of routine clinical laboratory data derived marker-based nomograms for the prediction of 5-year graft survival in kidney transplant recipientsCited by: 0
Author(s): Yamei Li, Yan Lin, Yang Li, Zhengli Wan, Yang Bai, Xianding Wang, Shumeng Hu, Xiaojuan Wu, Cuili Yang, Jiwen Fan, Hong‐Xi Xu, Lanlan Wang, Ying Shi
Software Mentions: 9
Published: about 3 years ago
10.3389/fcell.2021.718624
Identification of a Novel Prognostic Gene Signature From the Immune Cell Infiltration Landscape of OsteosarcomaCited by: 15
Author(s): Lei Fan, Jingtao Ru, Tao Liu, Chi Ma
Software Mentions: 9
Published: over 2 years ago
10.1002/sim.8859
Comparing methods for estimating patient‐specific treatment effects in individual patient data meta‐analysisCited by: 14
Author(s): Michael Seo, Ian R. White, Toshi A Furukawa, Hissei Imai, Marco Valgimigli, Matthias Egger, Marcel Zwahlen, Orestis Efthimiou
Software Mentions: 9
Published: over 3 years ago
10.1186/s12916-020-01826-0
Development and validation of a lifestyle-based model for colorectal cancer risk prediction: the LiFeCRC scoreCited by: 33
Author(s): Krasimira Aleksandrova, Robin Reichmann, Rudolf Kaaks, Mazda Jenab, H. Bas Bueno-de-Mesquita, Christina C. Dahm, Anne Kirstine Eriksen, Anne Tjønneland, Fanny Artaud, Marie Christine Boutron-Ruault, Gianluca Severi, Anika Hüsing, Antonia Trichopoulou, Anna Karakatsani, Eleni Peppa, Salvatore Panico, Giovanna Masala, Sara Grioni, Carlotta Sacerdote, Rosario Tumino, Sjoerd G. Elias, Anne M. May, Kristin Benjaminsen Borch, Torkjel M. Sandanger, Guri Skeie, María José Sánchez, José María Huerta, Núria Sala, Aurelio Barricarte Gurrea, J. Ramón Quiŕos, Pilar Amiano, Jonna Berntsson, Isabel Drake, Bethany Van Guelpen, Sophia Harlid, Tim Key, Elisabete Weiderpass, Elom K. Aglago, Amanda J. Cross, Konstantinos K. Tsilidis, Elio Riboli, Marc J. Gunter
Software Mentions: 9
Published: over 3 years ago
10.3389/fcell.2021.653240
CARD-Associated Risk Score Features the Immune Landscape and Predicts the Responsiveness to Anti-PD-1 Therapy in IDH Wild-Type GliomasCited by: 2
Author(s): De-Pei Li, Wanming Hu, Xiaoping Lin, Ji Zhang, Zhenqiang He, Sheng Zhong, Xiaozhong Wen, Peiyu Zhang, Xiaobing Jiang, Hao Duan, Chengcheng Guo, Jian Wang, Jing Zeng, Zhongping Chen, Yonggao Mou, Ke Sai
Software Mentions: 9
Published: about 3 years ago
10.18632/aging.103508
Radiomics-based prediction of survival in patients with head and neck squamous cell carcinoma based on pre- and post-treatment 18F-PET/CTCited by: 26
Author(s): Zheran Liu, Yuan Cao, Wei Diao, Yue Cheng, Zhiyun Jia, Xingchen Peng
Software Mentions: 9
Published: almost 4 years ago
10.1186/s12859-016-1149-8
Boosting the discriminatory power of sparse survival models via optimization of the concordance index and stability selectionCited by: 27
Author(s): Andreas Mayr, Benjamin Hofner, Matthias Schmid
Software Mentions: 9
Published: almost 8 years ago
10.1186/s12935-019-0846-6
Integrated analysis reveals potential long non-coding RNA biomarkers and their potential biological functions for disease free survival in gastric cancer patientsCited by: 34
Author(s): Ching‐Li Cheng, Qicai Wang, Mengting Zhu, Kelong Liu, Zhiqiao Zhang
Software Mentions: 9
Published: about 5 years ago
10.3389/fbioe.2019.00257
The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Mesothelioma With Bone MetastasisCited by: 23
Author(s): Runzhi Huang, Jiawen Wu, Zixuan Zheng, Guanghua Wang, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Haiyun Wang, Qi Lv, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 9
Published: over 4 years ago
10.1186/s13104-016-1945-2
Feature selection and validated predictive performance in the domain of Legionella pneumophila: a comparative studyCited by: 9
Author(s): Tjeerd van der Ploeg, Ewout W. Steyerberg
Software Mentions: 9
Published: about 8 years ago
10.1186/s12957-020-02025-0
Development of a novel prognostic score combining clinicopathologic variables, gene expression, and mutation profiles for lung adenocarcinomaCited by: 4
Author(s): Guofeng Li, Guangsuo Wang, Yanhua Guo, Shixuan Li, Youlong Zhang, Jialu Li, Bin Peng
Software Mentions: 9
Published: over 3 years ago
10.1186/s12935-021-02215-0
Identification of the prognostic value of a 2-gene signature of the WNT gene family in UCEC using bioinformatics and real-world dataCited by: 9
Author(s): Yuexin Hu, Mingjun Zheng, Dandan Zhang, Rui Gou, Ouxuan Liu, Shuang Wang, Bei Lin
Software Mentions: 9
Published: over 2 years ago
10.1186/s12935-020-1113-6
Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinomaCited by: 81
Author(s): Zedan Zhang, Enyu Lin, Hongkai Zhuang, Lu Xie, Xiaoqiang Feng, Jiumin Liu, Yuming Yu
Software Mentions: 9
Published: over 4 years ago
10.1186/s12935-020-01230-x
A Gleason score-related outcome model for human prostate cancer: a comprehensive study based on weighted gene co-expression network analysisCited by: 19
Author(s): Yongzhi Wang, Zhonghua Yang
Software Mentions: 9
Published: about 4 years ago
10.3389/fgene.2021.663617
Multi-Omics Data Analyses Construct a Six Immune-Related Genes Prognostic Model for Cervical Cancer in Tumor MicroenvironmentCited by: 10
Author(s): Fangfang Xu, Jiacheng Shen, Shaohua Xu
Software Mentions: 9
Published: almost 3 years ago
10.1111/eva.13296
Ageing European lobsters (<i>Homarus gammarus</i>) using DNA methylation of evolutionarily conserved ribosomal DNACited by: 8
Author(s): Eleanor A. Fairfield, David S. Richardson, Carly L. Daniels, Christopher L. Butler, Ewen Bell, Martin I. Taylor
Software Mentions: 9
Published: over 2 years ago
10.3389/fonc.2021.624395
Comprehensive Analysis of Expression Regulation for RNA m6A Regulators With Clinical Significance in Human CancersCited by: 12
Author(s): Xiaonan Liu, Pei Wang, Xufei Teng, Zhang Zhang, Shuhui Song
Software Mentions: 9
Published: about 3 years ago
10.3389/fonc.2020.578895
Radiomics Feature Activation Maps as a New Tool for Signature InterpretabilityCited by: 17
Author(s): Diem Vuong, Stephanie Tanadini‐Lang, Ze Wu, Robert J. Marks, Jan Unkelbach, Sven Hillinger, Eric Innocents Eboulet, Sandra Thierstein, Solange Peters, Miklos Pless, Matthias Gückenberger, Marta Bogowicz
Software Mentions: 9
Published: over 3 years ago
10.15252/msb.20188190
High‐throughput discovery of functional disordered regions: investigation of transactivation domainsCited by: 121
Author(s): Charles N. J. Ravarani, Tamara Y. Erkina, Greet De Baets, Daniel C Dudman, Alexandre M. Erkine, M. Madan Babu
Software Mentions: 9
Published: about 6 years ago
10.1186/s40478-019-0797-0
Extensive transcriptomic study emphasizes importance of vesicular transport in C9orf72 expansion carriersCited by: 36
Author(s): Dennis W. Dickson, Matthew Baker, Jazmyne L. Jackson, Mariely DeJesus-Hernandez, Ni Cole A. Finch, Shulan Tian, Michael G. Heckman, Cyril Pottier, Tania F. Gendron, Melissa E. Murray, Yingxue Ren, Joseph S. Reddy, Neill R. Graff‐Radford, Bradley F. Boeve, Ronald C. Petersen, David S. Knopman, Keith A. Josephs, Leonard Petrucelli, Björn Oskarsson, John W. Sheppard, Yan W. Asmann, Rosa Rademakers, Marka van Blitterswijk
Software Mentions: 9
Published: over 4 years ago
10.1038/s41598-021-96095-z
Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after deathCited by: 1
Author(s): Laura G. Antiga, Lode Sibbens, Yasmina Abakkouy, Ronny Decorte, Wouter Van Den Bogaert, Wim Van de Voorde
Software Mentions: 9
Published: almost 3 years ago
10.1186/s13550-021-00809-3
Preselection of robust radiomic features does not improve outcome modelling in non-small cell lung cancer based on clinical routine FDG-PET imagingCited by: 7
Author(s): Carol Oliveira, Florian Amstutz, Diem Vuong, Marta Bogowicz, Martin Hüllner, R. E. Forster, Lucas Basler, Christina Schröder, Eric Innocents Eboulet, Miklos Pless, Sandra Thierstein, Solange Peters, Sven Hillinger, Stephanie Tanadini‐Lang, Matthias Gückenberger
Software Mentions: 9
Published: over 2 years ago
10.3389/fonc.2020.602498
Metabolism-Associated Molecular Classification of Colorectal CancerCited by: 13
Author(s): Meng Zhang, Haizhou Wang, Ruyi Peng, Fei Xu, Fan Wang, Qiu Zhao
Software Mentions: 9
Published: over 3 years ago
10.1155/2021/5510780
A Five-Gene Prognostic Nomogram Predicting Disease-Free Survival of Differentiated Thyroid CancerCited by: 5
Author(s): Pan Ruchong, Hai-ping Tang, Xiang Wang
Software Mentions: 9
Published: almost 3 years ago
10.1155/2020/8816070
Progressive and Prognostic Performance of an Extracellular Matrix-Receptor Interaction Signature in Gastric CancerCited by: 20
Author(s): Xiangchou Yang, Liping Chen, Yuting Mao, Zijing Hu, Min He
Software Mentions: 9
Published: over 3 years ago
10.1186/s12885-021-08328-z
The tumor immune microenvironment and immune-related signature predict the chemotherapy response in patients with osteosarcomaCited by: 16
Author(s): Lijiang He, Hainan Yang, Jingshan Huang
Software Mentions: 9
Published: almost 3 years ago
10.1042/BSR20201604
Novel prognostic prediction model constructed through machine learning on the basis of methylation-driven genes in kidney renal clear cell carcinomaCited by: 11
Author(s): Weihao Tang, Ying Cao, Xiaoke Ma
Software Mentions: 9
Published: almost 4 years ago
10.1042/BSR20201001
Identification of prognostic and metastasis-related alternative splicing signatures in hepatocellular carcinomaCited by: 11
Author(s): Runzhi Huang, Gaili Yan, Hao Sun, Jie Zhang, Dianwen Song, Rui Kong, Penghui Yan, Peng Hu, Aiqing Xie, Siqiao Wang, Juanwei Zhuang, Huabin Yin, Tong Meng, Zongqiang Huang
Software Mentions: 9
Published: almost 4 years ago
10.3389/fonc.2021.698856
A Novel Ferroptosis-Related Gene Model for Overall Survival Predictions of Bladder Urothelial Carcinoma PatientsCited by: 9
Author(s): Min Zhang, Xin Zhang, Minghang Yu, Wei Zhang, Di Zhang, Song Zeng, Xi Wang, Xiaosong Hu
Software Mentions: 9
Published: almost 3 years ago
10.1093/jamia/ocab068
Stroke risk prediction using machine learning: a prospective cohort study of 0.5 million Chinese adultsCited by: 26
Author(s): Matthew Chun, Robert Clarke, Benjamin J. Cairns, David A. Clifton, Derrick Bennett, Yiping Chen, Yu Guo, Pei Pei, Jun Lv, Canqing Yu, Ling Yang, Liming Li, Zhengming Chen, Tingting Zhu
Software Mentions: 9
Published: about 3 years ago
10.1097/MD.0000000000020115
The establishment and evaluation of a new model for the prediction of Children B-ALL based on TARGETCited by: 0
Author(s): Xiangyu Gao, Li Chen
Software Mentions: 9
Published: about 4 years ago
10.1155/2019/5076467
Prediction of the Outcome for Patients with Glioblastoma with lncRNA Expression ProfilesCited by: 4
Author(s): Qinglin Liu, Changjing Qi, Gang Li, Wandong Su
Software Mentions: 9
Published: over 4 years ago
10.1186/s12885-021-08470-8
Alternative splicing associated with cancer stemness in kidney renal clear cell carcinomaCited by: 12
Author(s): Lixing Xiao, Guoying Zou, Rui Cheng, Pingping Wang, Kexin Ma, Huimin Cao, Wenyang Zhou, Xiyun Jin, Zhaochun Xu, Yan Huang, Xiaoyu Lin, Huan Nie, Qinghua Jiang
Software Mentions: 9
Published: almost 3 years ago
10.3390/molecules25071576
Model Optimization for the Prediction of Red Wine Phenolic Compounds Using Ultraviolet–Visible SpectraCited by: 4
Author(s): Chris Beaver, Thomas S. Collins, James F. Harbertson
Software Mentions: 9
Published: about 4 years ago
10.18632/aging.203390
Comprehensive analysis of new prognostic signature based on ferroptosis-related genes in clear cell renal cell carcinomaCited by: 8
Author(s): Bin Zheng, Zhihong Niu, Shubin Si, Guiting Zhao, Jianwei Wang, Zhongshun Yao, Fajuan Cheng
Software Mentions: 9
Published: almost 3 years ago
10.1155/2020/9762067
14-CpG-Based Signature Improves the Prognosis Prediction of Hepatocellular Carcinoma PatientsCited by: 8
Author(s): Hongye Jiang, Gang Ning, Yensheng Wang, Weibiao Lv
Software Mentions: 9
Published: over 4 years ago
10.18632/aging.203455
Construction of an immune-related lncRNA signature as a novel prognosis biomarker for LUADCited by: 9
Author(s): Hang Chen, Wei Shen, Saiqi Ni, Menglu Sang, Shibo Wu, Yinyu Mu, Kaitai Liu, Ni Li, Linwen Zhu, Guodong Xu
Software Mentions: 9
Published: over 2 years ago
10.1038/s41598-021-98998-3
VCAM1 expression in the myocardium is associated with the risk of heart failure and immune cell infiltration in myocardiumCited by: 19
Author(s): Tongyu Wang, Jiahu Tian, Yinji Jin
Software Mentions: 9
Published: over 2 years ago
10.3389/fgene.2021.661988
Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular CarcinomaCited by: 12
Author(s): Xingte Chen, Lei Wang, Liang Hong, Zhiying Su, Xiaohong Zhong, Han Zhou, Xueqing Zhang, Junxin Wang, Lingdong Shao
Software Mentions: 9
Published: almost 3 years ago
10.1186/s12014-017-9163-z
Discovery and validation of a colorectal cancer classifier in a new blood test with improved performance for high-risk subjectsCited by: 10
Author(s): Lisa J. Croner, Roslyn Dillon, Athit Kao, Stefanie N. Kairs, Ryan W. Benz, Ib Jarle Christensen, Hans Jørgen Nielsen, John E. Blume, Bruce E. Wilcox
Software Mentions: 9
Published: almost 7 years ago
10.1080/21655979.2020.1822715
A novel prognostic models for identifying the risk of hepatocellular carcinoma based on epithelial-mesenchymal transition-associated genesCited by: 15
Author(s): Chen Xiong, Guifu Wang, Dou‐Sheng Bai
Software Mentions: 9
Published: over 4 years ago
10.1111/jcmm.14767
An EMT‐related gene signature for the prognosis of human bladder cancerCited by: 113
Author(s): Rui Cao, Lushun Yuan, Bo Ma, Gang Wang, Wei Qiu, Ye Tian
Software Mentions: 9
Published: over 4 years ago
10.1186/s13059-020-02038-8
Personalized and graph genomes reveal missing signal in epigenomic dataCited by: 25
Author(s): Cristian Groza, Tony Kwan, Nicole Soranzo, Tomi Pastinen, Guillaume Bourque
Software Mentions: 8
Published: almost 4 years ago
10.1002/cam4.4156
Comprehensive analysis of a new prognosis signature based on histone deacetylases in clear cell renal cell carcinomaCited by: 6
Author(s): Fajuan Cheng, Bin Zheng, Jianwei Wang, Guiting Zhao, Zhongshun Yao, Zhihong Niu
Software Mentions: 8
Published: almost 3 years ago
10.7717/peerj.7942
A genomic-clinical nomogram predicting recurrence-free survival for patients diagnosed with hepatocellular carcinomaCited by: 6
Author(s): Junjie Kong, Tao Wang, Shu Shen, Zifei Zhang, Xianwei Yang, Wentao Wang
Software Mentions: 8
Published: over 4 years ago
10.1186/s12884-018-1971-2
Comparison of logistic regression with machine learning methods for the prediction of fetal growth abnormalities: a retrospective cohort studyCited by: 70
Author(s): Stefan Kuhle, Bryan Maguire, Hongqun Zhang, David C. Hamilton, Alexander C. Allen, K.S. Joseph, Victoria M. Allen
Software Mentions: 8
Published: almost 6 years ago
10.1002/cam4.3655
Immune landscape and a promising immune prognostic model associated with TP53 in early‐stage lung adenocarcinomaCited by: 17
Author(s): Chia-Chien Wu, Rong Xiang, Lin Wei
Software Mentions: 8
Published: over 3 years ago
10.1534/g3.114.010298
Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic ArchitecturesCited by: 132
Author(s): Réka Howard, Alicia L. Carriquiry, William D. Beavis
Software Mentions: 8
Published: almost 10 years ago
10.1186/s12859-020-03618-y
Accounting for grouped predictor variables or pathways in high-dimensional penalized Cox regression modelsCited by: 11
Author(s): Shaima Belhechmi, Riccardo De Bin, Federico Rotolo, Stefan Michiels
Software Mentions: 8
Published: almost 4 years ago
10.7717/peerj.10682
Identification of the hub genes in gastric cancer through weighted gene co-expression network analysisCited by: 7
Author(s): Chunyang Li, Haopeng Yu, Yajing Sun, Xiaoxi Zeng, Wei Zhang
Software Mentions: 8
Published: about 3 years ago
10.3389/fonc.2021.630905
Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer PatientsCited by: 14
Author(s): Fan Yuan, Xingchen Li, Li Tian, Jianliu Wang
Software Mentions: 8
Published: about 3 years ago
10.7717/peerj.11599
A seven-lncRNA signature for predicting Ewing’s sarcomaCited by: 8
Author(s): Zhihui Chen, Xinyu Wang, Guozhu Wang, Bin Xiao, Zhe Ma, Hongliang Huo, Weiwei Li
Software Mentions: 8
Published: almost 3 years ago
10.1038/s41389-019-0157-8
DeepCC: a novel deep learning-based framework for cancer molecular subtype classificationCited by: 119
Author(s): Feng Gao, Wei Wang, Miaomiao Tan, Lina Zhu, Yuchen Zhang, Evelyn Fessler, Louis Vermeulen, Xin Wang
Software Mentions: 8
Published: almost 5 years ago
10.3389/fcell.2021.681745
Comprehensive Analysis of the Immune Infiltrates and PD-L1 of m6A RNA Methylation Regulators in Hepatocellular CarcinomaCited by: 9
Author(s): Yali Xu, Xueling He, Junjian Deng, Lin Xiong, Yue Li, Xiaoyu Zhang, Wenliang Chen, Xin Liu, Ximing Xu
Software Mentions: 8
Published: almost 3 years ago
10.3389/fonc.2021.642527
An Exploration of the Tumor Microenvironment Identified a Novel Five-Gene Model for Predicting Outcomes in Bladder CancerCited by: 2
Author(s): Xinjie Li, Jiahao Feng, Yazhou Sun, Xin Li
Software Mentions: 8
Published: about 3 years ago
10.3389/fonc.2020.574939
Identification of an Immune-Related Gene Signature Based on Immunogenomic Landscape Analysis to Predict the Prognosis of Adult Acute Myeloid Leukemia PatientsCited by: 19
Author(s): Ruiqi Zhu, Huishan Tao, Wenyi Lin, Liang Tang, Yu Hu
Software Mentions: 8
Published: over 3 years ago
10.1101/2020.11.25.20235150
T cell and antibody functional correlates of severe COVID-19Cited by: 8
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pone.0222024
Serum microRNA-based prediction of responsiveness to eribulin in metastatic breast cancerCited by: 21
Author(s): Natsuko Satomi-Tsushita, Akihiko Shimomura, Juntaro Matsuzaki, Yusuke Yamamoto, Junpei Kawauchi, Satoko Takizawa, Yasumichi Aoki, Hiromi Sanada, Ken Kato, Chikako Shimizu, Takahiro Ochiya, Kenji Takagi
Software Mentions: 8
Published: over 4 years ago
10.3389/fcell.2021.653357
Combination of Immune-Related Genomic Alterations Reveals Immune Characterization and Prediction of Different Prognostic Risks in Ovarian CancerCited by: 2
Author(s): Xibo Zhao, Shanshan Cong, Qiuyan Guo, Yan Cheng, Tian Liang, Jing Wang, Guangmei Zhang
Software Mentions: 8
Published: about 3 years ago
10.18632/aging.103707
A 12-immune cell signature to predict relapse and guide chemotherapy for stage II colorectal cancerCited by: 4
Author(s): Xianglong Tian, Xiaoqiang Zhu, Meng Wu, Shiguang Bai, Min Shi, Shihao Xiang, Zhao Chun-hua, Yugang Wang
Software Mentions: 8
Published: over 3 years ago
10.1186/s13643-019-0942-7
Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening errorCited by: 86
Author(s): Alexandra Bannach‐Brown, Piotr Przybyła, James Thomas, Andrew S.C. Rice, Sophia Ananiadou, Jing Liao, Malcolm Macleod
Software Mentions: 8
Published: over 5 years ago
10.1007/s00122-017-3030-1
Predictive ability of genomic selection models in a multi-population perennial ryegrass training set using genotyping-by-sequencingCited by: 49
Author(s): Marty J. Faville, Siva Ganesh, Mingshu Cao, M. Z. Z. Jahufer, Timothy P. Bilton, H. S. Easton, Douglas L. Ryan, Jason A. K. Trethewey, M. P. Rolston, Andrew G. Griffiths, Roger Moraga, Casey Flay, Joana Schmidt, Rachel Tan, Brent Barrett
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0242730
A comparison of penalised regression methods for informing the selection of predictive markersCited by: 14
Author(s): Christopher J Greenwood, George J. Youssef, Primrose Letcher, Jacqui A. Macdonald, Lauryn Hagg, Ann Sanson, Jennifer McIntosh, Delyse Hutchinson, John W. Toumbourou, Matthew Fuller‐Tyszkiewicz, Craig A. Olsson
Software Mentions: 8
Published: over 3 years ago
10.3389/fcvm.2020.586871
Predicting Diagnostic Gene Biomarkers Associated With Immune Infiltration in Patients With Acute Myocardial InfarctionCited by: 64
Author(s): Enfa Zhao, Hang Xie, Yushun Zhang
Software Mentions: 8
Published: over 3 years ago
10.1186/s12877-021-02346-z
Development of a multivariable prognostic PREdiction model for 1-year risk of FALLing in a cohort of community-dwelling older adults aged 75 years and above (PREFALL)Cited by: 6
Author(s): Gustav Valentin Gade, Martin Grønbech Jørgensen, Jesper Ryg, Tahir Masud, Lasse Jakobsen, Stig Andersen
Software Mentions: 8
Published: almost 3 years ago
10.18632/aging.203266
Clinical significance and prognostic role of an immune-related gene signature in gastric adenocarcinomaCited by: 4
Author(s): Rui Mao, Kehao Liu, Nana Zhao, Pengsen Guo, Yingxin Wu, Zheng Wang, Yanjun Liu, Tongtong Zhang
Software Mentions: 8
Published: almost 3 years ago
10.1186/s12864-018-4649-2
Identification and characterization of functional modules reflecting transcriptome transition during human neuron maturationCited by: 15
Author(s): Zhisong He, Qianhui Yu
Software Mentions: 8
Published: about 6 years ago
10.1038/s41598-021-97090-0
Prognostic nomogram for predicting 5-year overall survival in Chinese patients with high-grade osteosarcomaCited by: 4
Author(s): Zhihong Yao, Zunxian Tan, Jifei Yang, Yihao Yang, Cao Wang, Jiaxiang Chen, Yanan Zhu, Tiying Wang, Lei Han, Lin Zhu, Zuozhang Yang
Software Mentions: 8
Published: over 2 years ago
10.1038/s41598-021-97221-7
An interaction regression model for crop yield predictionCited by: 25
Author(s): Javad Ansarifar, Lizhi Wang, Sotirios Archontoulis
Software Mentions: 8
Published: over 2 years ago
10.3389/fonc.2018.00100
Genomic DNA Methylation-Derived Algorithm Enables Accurate Detection of Malignant Prostate TissuesCited by: 35
Author(s): Erfan Aref‐Eshghi, Laila C. Schenkel, Peter Ainsworth, Hanxin Lin, David I. Rodenhiser, Jean‐Claude Cutz, Bekim Sadiković
Software Mentions: 8
Published: about 6 years ago
10.1038/s41598-021-94732-1
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytesCited by: 22
Author(s): Tanya Grancharova, Kaytlyn A. Gerbin, Alexander Rosenberg, Charles M. Roco, Joy Arakaki, Colette M DeLizo, Stephanie Q. Dinh, Rory Donovan-Maiye, Matthew Hirano, Angelique M. Nelson, Joyce Tang, Julie A. Theriot, Calysta Yan, Vilas Menon, Sean P. Palecek, Georg Seelig, Ruwanthi N. Gunawardane
Software Mentions: 8
Published: almost 3 years ago
10.1017/S0950268820000758
Development and external-validation of a nomogram for predicting the survival of hospitalised HIV/AIDS patients based on a large study cohort in western ChinaCited by: 5
Author(s): Zongxiang Yuan, Bo Zhou, Sirun Meng, Jie Jiang, Shenghong Huang, Xiang Lu, Nianning Wu, Zhongkui Xie, Jianning Deng, X. Chen, J. Liu, J. Zhang, Fengyao Wu, Hao Liang, L. Ye
Software Mentions: 8
Published: over 4 years ago
10.1007/s00259-020-04864-1
A CT-based radiomics model to detect prostate cancer lymph node metastases in PSMA radioguided surgery patientsCited by: 25
Author(s): Jan C. Peeken, Mohamed A. Shouman, Markus Kroenke, Isabel Rauscher, Tobias Maurer, Jürgen E. Gschwend, Matthias Eiber, Stephanie E. Combs
Software Mentions: 8
Published: almost 4 years ago
10.3390/ani11071940
Prevalence of BRD-Related Viral Pathogens in the Upper Respiratory Tract of Swiss Veal CalvesCited by: 12
Author(s): Edgar Studer, Lutz Schönecker, Mireille Meylan, Dimitri Stucki, Ronald Dijkman, Melle Holwerda, Anna N. Glaus, Jens Becker
Software Mentions: 8
Published: almost 3 years ago
10.3390/diagnostics11061079
Identification of Diagnostic Biomarkers and Their Correlation with Immune Infiltration in Age-Related Macular DegenerationCited by: 3
Author(s): Yuyang Zeng, Xiujuan Yin, Changzheng Chen, Yiqiao Xing
Software Mentions: 8
Published: almost 3 years ago
10.1186/s12885-021-08012-2
Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinomaCited by: 5
Author(s): Haitao Chen, Yueying Li, Shu–Yuan Xiao, Jingyi Guo
Software Mentions: 8
Published: about 3 years ago
10.1007/s12282-020-01191-z
Immune-related gene data-based molecular subtyping related to the prognosis of breast cancer patientsCited by: 1
Author(s): Guoyu Mu, Hong Ji, Hui He, Hongjiang Wang
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pgen.1006995
Environmental perturbations lead to extensive directional shifts in RNA processingCited by: 24
Author(s): Allison L. Richards, Donovan Watza, Anthony Findley, Adnan Alazizi, Xiaoquan Wen, Athma A. Pai, Roger Piqué-Regi, Francesca Luca
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pcbi.1004956
Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data AnalysisCited by: 38
Author(s): Rebeca Campos-Sánchez, Marzia A. Cremona, Alessia Pini, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 8
Published: almost 8 years ago
10.1186/s12885-021-08447-7
Identification of a tumor microenvironment-related seven-gene signature for predicting prognosis in bladder cancerCited by: 17
Author(s): Wang Zhi, Lei Tu, Minfeng Chen, Shiyu Tong
Software Mentions: 8
Published: almost 3 years ago
10.1111/jcmm.15601
Novel gene signatures for prognosis prediction in ovarian cancerCited by: 25
Author(s): Mingyang Bao, Lihua Zhang, Yue‐Qing Hu
Software Mentions: 8
Published: almost 4 years ago
10.1186/s41512-021-00103-9
The development and validation of prognostic models for overall survival in the presence of missing data in the training dataset: a strategy with a detailed exampleCited by: 1
Author(s): Kara-Louise Royle, David A. Cairns
Software Mentions: 8
Published: almost 3 years ago
10.3389/fonc.2020.558596
Development and Validation of Autophagy-Related Gene Signature and Nomogram for Predicting Survival in Oral Squamous Cell CarcinomaCited by: 25
Author(s): Chen Hou, Hao Cai, Yue Zhu, Shuojin Huang, Song Fan, Jinsong Hou
Software Mentions: 8
Published: over 3 years ago
10.3389/fonc.2019.01314
An Immune-Related Signature Predicts Survival in Patients With Lung AdenocarcinomaCited by: 94
Author(s): Minghui Zhang, Kaibin Zhu, Haihong Pu, Zhuozhong Wang, Hongli Zhao, Jinfeng Zhang, Yan Wang
Software Mentions: 8
Published: over 4 years ago