Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1006995

https://doi.org/10.1371/journal.pgen.1006995

Environmental perturbations lead to extensive directional shifts in RNA processing

Cited by: 24
Author(s): Allison L. Richards, Donovan Watza, Anthony Findley, Adnan Alazizi, Xiaoquan Wen, Athma A. Pai, Roger Piqué-Regi, Francesca Luca
Published: about 7 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: compare
Comparing Objects for Differences
Papers that mentioned: 23
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: compare
Alternative syntax for comparing/asserting expressions in Python. Supports pluggable matchers for custom comparisons.
Papers that mentioned: 23
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: of
The Optimal Framework is the fastest path to building any modern multi-user system
Papers that mentioned: 1,025