Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: glmnet
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
51 versions
Latest release: over 1 year ago
531 dependent packages
128,740 downloads last month
Papers Mentioning glmnet 1,607
10.1042/BSR20210527
Construction of a prognostic model for non-small-cell lung cancer based on ferroptosis-related genesCited by: 10
Author(s): Ke Han, Jukun Wang, Kun Qian, Teng Zhao, Xingsheng Liu, Yi Zhang
Software Mentions: 11
Published: over 3 years ago
10.1111/jcmm.15939
Prognostic value and immune cell infiltration of hypoxic phenotype‐related gene signatures in glioblastoma microenvironmentCited by: 10
Author(s): Kai Xiao, Jun Tan, Jian Yuan, Gang Peng, Wenyong Long, Jun Su, Yao Xiao, Qian Xiao, Changwu Wu, Chaoying Qin, Lili Hu, Kaili Liu, Shunlian Liu, Hao Zhou, Yichong Ning, Xiaojuan Ding, Qing Liu
Software Mentions: 11
Published: about 4 years ago
10.3389/fgene.2021.609174
METTL14 Acts as a Potential Regulator of Tumor Immune and Progression in Clear Cell Renal Cell CarcinomaCited by: 11
Author(s): Tianbo Xu, Su Gao, Hailong Ruan, Jingchong Liu, Yuenan Liu, Di Liu, Junwei Tong, Jian Shi, Hongmei Yang, Ke Chen, Xiaoping Zhang
Software Mentions: 11
Published: over 3 years ago
10.3390/jcm9113643
Diabetic Retinopathy Environment-Wide Association Study (EWAS) in NHANES 2005–2008Cited by: 10
Author(s): Kevin Blighe, Sarega Gurudas, Ying Lee, Sobha Sivaprasad
Software Mentions: 11
Published: about 4 years ago
10.3390/biomedicines8110488
TCox: Correlation-Based Regularization Applied to Colorectal Cancer Survival DataCited by: 4
Author(s): Carolina Peixoto, Marta B. Lopes, Marta Martins, Luís Costa, Susana Vinga
Software Mentions: 11
Published: about 4 years ago
10.1017/S003329171800315X
A machine learning ensemble to predict treatment outcomes following an Internet intervention for depressionCited by: 37
Author(s): Rahel Pearson, Derek Pisner, Björn Meyer, Jason Shumake, Christopher G. Beevers
Software Mentions: 11
Published: about 6 years ago
10.1111/jcmm.16552
Identification of autophagy‐related genes signature predicts chemotherapeutic and immunotherapeutic efficiency in bladder cancer (BLCA)Cited by: 8
Author(s): Rui Cao, Bo Ma, Gang Wang, Yaoyi Xiong, Ye Tian, Lushun Yuan
Software Mentions: 11
Published: over 3 years ago
10.18632/aging.202957
Integrative analysis identifies key mRNA biomarkers for diagnosis, prognosis, and therapeutic targets of HCV-associated hepatocellular carcinomaCited by: 8
Author(s): Yongqiang Zhang, Yuqin Tang, Chengbin Guo, Gen Li
Software Mentions: 11
Published: over 3 years ago
10.3390/diagnostics11081517
Prediction Model for Tumor Budding Status Using the Radiomic Features of F-18 Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography in Cervical CancerCited by: 5
Author(s): Gun Oh Chong, Shin‐Hyung Park, Shin Young Jeong, Su Jeong Kim, Nora Jee-Young Park, Yoon Hee Lee, Sang‐Woo Lee, Dae Gy Hong, Ji Young Park, Hyung Soo Han
Software Mentions: 11
Published: about 3 years ago
10.3390/diagnostics10030171
GRB10 and E2F3 as Diagnostic Markers of Osteoarthritis and Their Correlation with Immune InfiltrationCited by: 56
Author(s): Yajun Deng, Enhui Ren, Wenhua Yuan, Guang-Zhi Zhang, Zhi-Xi Wu, Qiqi Xie
Software Mentions: 11
Published: over 4 years ago
10.1111/jcmm.16773
Peripheral blood transcriptome heterogeneity and prognostic potential in lung cancer revealed by RNA‐SeqCited by: 3
Author(s): Qi Zhang, Manchao Kuang, Haiyin An, Yajing Zhang, Kai Zhang, Feng Li, Lei Zhang, Shujun Cheng
Software Mentions: 11
Published: over 3 years ago
10.3389/fgene.2019.01380
Germ Cell-Specific Gene 1-Like Protein Regulated by Splicing Factor CUGBP Elav-Like Family Member 5 and Primary Bile Acid Biosynthesis are Prognostic in Glioblastoma MultiformeCited by: 6
Author(s): Runzhi Huang, Zhenyu Li, Chen Li, Guanghua Wang, Penghui Yan, Li P, Jiaqi Wang, Xiaolong Zhu, Peng Hu, Junfang Zhang, Zhengyan Chang, Zongqiang Huang, Liming Cheng, Jie Zhang
Software Mentions: 11
Published: almost 5 years ago
10.3389/fgene.2021.620705
Identification of Tumor Microenvironment-Related Prognostic Genes in SarcomaCited by: 6
Author(s): Dongjun Dai, Lanyu Xie, Yongjie Shui, Jinfan Li, Qichun Wei
Software Mentions: 11
Published: almost 4 years ago
10.3389/fgene.2021.692426
A Ferroptosis-Related Gene Signature Identified as a Novel Prognostic Biomarker for Colon CancerCited by: 15
Author(s): Xin Qi, Rui Wang, Yuxin Lin, Donghui Yan, Jiachen Zuo, Jiajia Chen, Bairong Shen
Software Mentions: 11
Published: over 3 years ago
10.3389/fgene.2021.625145
Identification of Tumor Microenvironment-Related Prognostic Biomarkers for Ovarian Serous Cancer 3-Year Mortality Using Targeted Maximum Likelihood Estimation: A TCGA Data Mining StudyCited by: 2
Author(s): Lu Wang, Xiaoru Sun, Chuandi Jin, Yue Fan, Fuzhong Xue
Software Mentions: 11
Published: over 3 years ago
10.3389/pore.2021.1609852
Identification of a Gene Prognostic Model of Gastric Cancer Based on Analysis of Tumor Mutation BurdenCited by: 9
Author(s): Weijun Ma, Weidong Li, Xu Liu, Lu Liu, Xinbing Yu, Liping Yang, Mingxu Da
Software Mentions: 11
Published: about 3 years ago
10.3389/fgene.2021.733715
Development and Validation of a Novel Gene Signature for Predicting the Prognosis by Identifying m5C Modification Subtypes of Cervical CancerCited by: 2
Author(s): Jing Yu, Leilei Liang, Jing Liu, Tingting Liu, Jian Li, Lin Xiu, Jia Zeng, Tiantian Wang, Di Wang, Lijun Liang, Dawei Xie, Ding-Xiong Chen, Jusheng An, Lingying Wu
Software Mentions: 11
Published: about 3 years ago
10.1186/s12935-021-01795-1
Identification and development of a novel invasion-related gene signature for prognosis prediction in colon adenocarcinomaCited by: 15
Author(s): Jiahua Liu, Chunhui Jiang, Chunjie Xu, Dongyang Wang, Ya Shen, Ye Liu, Lei Gu
Software Mentions: 11
Published: almost 4 years ago
10.1167/jov.21.1.1
Flexible contextual modulation of naturalistic texture perception in peripheral visionCited by: 9
Author(s): Daniel Herrera-Esposito, Ruben Coen-Cagli, Leonel Gómez-Sena
Software Mentions: 11
Published: almost 4 years ago
10.1186/s12935-020-01393-7
Small nucleolar RNAs signature (SNORS) identified clinical outcome and prognosis of bladder cancer (BLCA)Cited by: 5
Author(s): Rui Cao, Bo Ma, Lushun Yuan, Gang Wang, Ye Tian
Software Mentions: 11
Published: over 4 years ago
10.1371/journal.pcbi.1007665
CAncer bioMarker Prediction Pipeline (CAMPP)—A standardized framework for the analysis of quantitative biological dataCited by: 8
Author(s): Thilde Terkelsen, Anders Krogh, Elena Papaleo
Software Mentions: 11
Published: over 4 years ago
10.3389/fonc.2021.626654
Identification of a Novel Four-Gene Signature Correlated With the Prognosis of Patients With Hepatocellular Carcinoma: A Comprehensive AnalysisCited by: 7
Author(s): Weihua Zhu, Lixin Ru, Zhenchao Ma
Software Mentions: 11
Published: over 3 years ago
10.3389/fphys.2021.714195
Development and Validation of a Prediction Model for Elevated Arterial Stiffness in Chinese Patients With Diabetes Using Machine LearningCited by: 5
Author(s): Qingqing Li, Wenhui Xie, Liping Li, Lijing Wang, Qinyi You, Lu Chen, Jing Li, Yilang Ke, Jun Fang, Libin Liu, Huashan Hong
Software Mentions: 11
Published: about 3 years ago
10.3389/fpls.2020.588856
So Closely Related and Yet So Different: Strong Contrasts Between the Evolutionary Histories of Species of the Cardamine pratensis Polyploid Complex in Central EuropeCited by: 16
Author(s): Andrea Melichárková, Marek Šlenker, Judita Zozomová‐Lihová, Katarína Skokanová, Barbora Šingliarová, Tatiana Kačmárová, Michaela Caboňová, Matúš Kempa, Gabriela Šrámková, Terezie Mandáková, Martin Lysák, Marek Svitok, Lenka Mártonfiová, Karol Marhold
Software Mentions: 11
Published: almost 4 years ago
10.3389/fonc.2021.593587
A Nomogram Combining a Four-Gene Biomarker and Clinical Factors for Predicting Survival of MelanomaCited by: 4
Author(s): Chuan Zhang, Dan Dang, Yuqian Wang, Xianling Cong
Software Mentions: 11
Published: over 3 years ago
10.3389/fonc.2021.640150
Construction of Competitive Endogenous RNA Network and Verification of 3-Key LncRNA Signature Associated With Distant Metastasis and Poor Prognosis in Patients With Clear Cell Renal Cell CarcinomaCited by: 19
Author(s): Yang Su, Tianxiang Zhang, Jiapeng Tang, Li Zhang, Song Fan, Jun Zhou, Chaozhao Liang
Software Mentions: 11
Published: over 3 years ago
10.3389/fonc.2021.614052
MRI Radiomics Signature as a Potential Biomarker for Predicting KRAS Status in Locally Advanced Rectal Cancer PatientsCited by: 9
Author(s): Zhiyuan Zhang, Lijun Shen, Yan Wang, Jiazhou Wang, Hui Zhang, Xuesen Fan, Juefeng Wan
Software Mentions: 11
Published: over 3 years ago
10.1002/sim.8116
Correlation‐adjusted regression survival scores for high‐dimensional variable selectionCited by: 10
Author(s): Thomas Welchowski, Verena Zuber, Matthias Schmid
Software Mentions: 11
Published: over 5 years ago
10.3389/fonc.2020.00691
Immunoscore Predicts Survival in Early-Stage Lung Adenocarcinoma PatientsCited by: 12
Author(s): Zihuan Zhao, Dan Zhao, Jianguo Xia, Yichuan Wang, Buhai Wang
Software Mentions: 11
Published: over 4 years ago
10.3389/fonc.2021.672928
Glioma-Associated Stromal Cells Stimulate Glioma Malignancy by Regulating the Tumor Immune MicroenvironmentCited by: 13
Author(s): Xiangming Cai, Feng Yuan, Junhao Zhu, Jin Yang, Chao Tang, Zixiang Cong, Chiyuan Ma
Software Mentions: 11
Published: over 3 years ago
10.3389/fonc.2021.644956
A New Oxaliplatin Resistance-Related Gene Signature With Strong Predicting Ability in Colon Cancer Identified by Comprehensive ProfilingCited by: 6
Author(s): Qiu Sheng Lin, Liang Luo, Hua Wang
Software Mentions: 10
Published: over 3 years ago
10.1038/s41598-021-96236-4
A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinomaCited by: 5
Author(s): Yang Liu, Qiuhong Wu, Xuejiao Fan, Wen Li, Yong Li, Hui Zhu, Qinghua Zhou, Jinming Yu
Software Mentions: 10
Published: over 3 years ago
10.1155/2021/6365459
Identification of a Pyroptosis-Related Gene Signature for Prediction of Overall Survival in Lung AdenocarcinomaCited by: 14
Author(s): Donghai Zheng, Lv Bian, Minglang Wang, Luoqing Wang, Yilian Wang
Software Mentions: 10
Published: about 3 years ago
10.3389/fonc.2020.01710
Prognostic Implications of Metabolism Related Gene Signature in Cutaneous MelanomaCited by: 14
Author(s): Furong Zeng, Juan Su, Cong Peng, Mengting Liao, Shuang Zhao, Ying Guo, Xiang Chen, Guangtong Deng
Software Mentions: 10
Published: about 4 years ago
10.3389/fonc.2021.747300
High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast CancerCited by: 2
Author(s): Xinkui Liu, Yang Wu, Yingying Zhang, Dechao Bu, Chao Wu, Shan Lu, Zhihong Huang, Yurong Song, Yi Zhao, Fengying Guo, Peizhi Ye, Changgeng Fu, Liangliang Shen, Jingyuan Zhang, Haojia Wang, Xianchun Duan, Jiarui Wu
Software Mentions: 10
Published: about 3 years ago
10.7150/ijms.53602
Development and validation of a comprehensive radiomics nomogram for prognostic prediction of primary hepatic sarcomatoid carcinoma after surgical resectionCited by: 5
Author(s): Youyin Tang, Tao Zhang, Ying Zhao, Zhe-Yu Chen, Xuelei Ma
Software Mentions: 10
Published: almost 4 years ago
10.3389/fonc.2021.729103
Identification of Iron Metabolism-Related Genes as Prognostic Indicators for Lower-Grade GliomaCited by: 17
Author(s): Shenbin Xu, Zefeng Wang, Juan Ye, Shuhao Mei, Jianmin Zhang
Software Mentions: 10
Published: about 3 years ago
10.3389/fmolb.2021.692530
Ferroptosis-Related Gene Signature and Patterns of Immune Infiltration Predict the Overall Survival in Patients With Lung AdenocarcinomaCited by: 5
Author(s): Yuxuan Wang, Weikang Chen, Minqi Zhu, Lei Xian
Software Mentions: 10
Published: over 3 years ago
10.1002/1878-0261.12850
High‐throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype‐specific serologically relevant biomarkersCited by: 13
Author(s): Thilde Terkelsen, Maria Pernemalm, Pavel Gromov, Anna‐Lise Børresen‐Dale, Anders Krogh, Vilde Drageset Haakensen, Janne Lethiö, Elena Papaleo, Irina Gromova
Software Mentions: 10
Published: almost 4 years ago
10.1093/biostatistics/kxz034
Adaptive penalization in high-dimensional regression and classification with external covariates using variational BayesCited by: 10
Author(s): Britta Velten, Wolfgang Huber
Software Mentions: 10
Published: about 5 years ago
10.1371/journal.pone.0127816
HIV-1 Coreceptor Usage Assessment by Ultra-Deep Pyrosequencing and Response to MaravirocCited by: 3
Author(s): Christophe Rodriguez, Cathia Soulié, Anne–Geneviève Marcelin, Vincent Cálvez, Diane Descamps, Charlotte Charpentier, Philippe Flandre, Patrícia Recordon-Pinson, Pantxika Bellecave, Jean‐Michel Pawlotsky, Bernard Masquelier
Software Mentions: 10
Published: over 9 years ago
10.1002/1878-0261.12747
Identification and validation of a combined hypoxia and immune index for triple‐negative breast cancerCited by: 57
Author(s): Shaoquan Zheng, Yutian Zou, Jie Liang, Weikai Xiao, Anli Yang, Tiebao Meng, Shilin Lu, Zhong-Bing Luo, Xiaoming Xie
Software Mentions: 10
Published: over 4 years ago
10.1038/s41598-020-66650-1
Predicting dengue importation into Europe, using machine learning and model-agnostic methodsCited by: 17
Author(s): Donald Salami, Carla Sousa, Maria do Rosário Oliveira Martins, César Capinha
Software Mentions: 10
Published: over 4 years ago
10.1126/sciadv.abc3781
Extensive tissue-specific expression variation and novel regulators underlying circadian behaviorCited by: 21
Author(s): Maria Litovchenko, Antonio C. A. Meireles-Filho, Michael Frochaux, R. Bevers, Alessio Prunotto, Ane Martín Anduaga, Brian Hollis, Vincent Gardeux, Virginie Braman, Julie Russeil, Sebastián Kadener, Matteo Dal Peraro, Bart Deplancke
Software Mentions: 10
Published: almost 4 years ago
10.18632/aging.103517
Identifying CpG methylation signature as a promising biomarker for recurrence and immunotherapy in non–small-cell lung carcinomaCited by: 13
Author(s): Ruihan Luo, Song Jing, Xiao Xiao, Zhengbo Xie, Zhuochen Zhao, Wanfeng Zhang, Shiqi Miao, Yongyao Tang, Longke Ran
Software Mentions: 10
Published: over 4 years ago
10.1371/journal.pone.0194085
Predicting urinary tract infections in the emergency department with machine learningCited by: 112
Author(s): Richard A. Taylor, Christopher L. Moore, Kei‐Hoi Cheung, Cynthia Brandt
Software Mentions: 10
Published: over 6 years ago
10.1038/s41598-017-05505-8
Machine Learning Algorithms for Risk Prediction of Severe Hand-Foot-Mouth Disease in ChildrenCited by: 15
Author(s): Bin Zhang, Xiang Wan, Fu Ouyang, Yu Dong, Dehui Luo, Jing Liu, Long Liang, Wen Bo Chen, Xiao Luo, Xiao Mo, Lu Zhang, Wen Hui Huang, Shu Fang Pei, Bao Liang Guo, Chun Liang, Long Zhou, Shui Xing Zhang
Software Mentions: 10
Published: over 7 years ago
10.3390/jcm8091298
Comparison of Machine Learning Techniques for Prediction of Hospitalization in Heart Failure PatientsCited by: 32
Author(s): Giulia Lorenzoni, Stefano Santo Sabato, Corrado Lanera, Daniele Bottigliengo, Clara Minto, Honoria Ocagli, Paola De Paolis, Darío Gregori, Sabino Iliceto, Franco Pisanò
Software Mentions: 10
Published: about 5 years ago
10.1371/journal.pone.0222603
Clinical correlates of workplace injury occurrence and recurrence in adultsCited by: 1
Author(s): Zhaoyi Chen, Mattia Prosperi, Jiang Bian, Jae Min, Mo Wang, Chang Li
Software Mentions: 10
Published: about 5 years ago
10.1186/s12916-020-01595-w
Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infectionCited by: 30
Author(s): Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao, Tianlu Chen, Yixing Wang, Hua Zhang, Zhun Xiao, Xin-Zhu Liu, Youping Deng, Linda L. Wong, Cynthia Rajani, Sandi A. Kwee, Hua Bian, Xin Gao, Ping Liu, Jia Wang
Software Mentions: 10
Published: over 4 years ago
10.1097/MD.0000000000026068
MiRNA-based model for predicting the TMB level in colon adenocarcinoma based on a LASSO logistic regression methodCited by: 1
Author(s): Zhengtian Li, Lingling Jiang, Rong Zhao, Jun Huang, Weibo Yang, Zhenpei Wen, Bo Zhang, Gang Du
Software Mentions: 10
Published: over 3 years ago
10.7717/peerj.9624
Genome‐wide identification of CpG island methylator phenotype related gene signature as a novel prognostic biomarker of gastric cancerCited by: 12
Author(s): Zhi Zeng, Daxing Xie, Jianping Gong
Software Mentions: 10
Published: over 4 years ago
10.1111/jcmm.14918
An outcome model for human bladder cancer: A comprehensive study based on weighted gene co‐expression network analysisCited by: 24
Author(s): Yaoyi Xiong, Lushun Yuan, Jing Xiong, Huimin Xu, Yongwen Luo, Gang Wang, Lingao Ju, Yu Xiao, Xinghuan Wang
Software Mentions: 10
Published: almost 5 years ago
10.1172/jci.insight.147535
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2–infected patients by sex and ageCited by: 12
Author(s): Paula Paccielli Freire, Amélia Pasqual Marques, G. Baiocchi, Lena F. Schimke, Dennyson Leandro M. Fonseca, Ranieri Coelho Salgado, Igor Salerno Filgueiras, Sarah M.S. Napoleao, Desirée Rodrigues Plaça, Karen Tiemi Akashi, Thiago Dominguez Crespo Hirata, Nadia El Khawanky, Lasse Melvær Giil, Gustavo Cabral-Miranda, Robson Francisco Carvalho, Luís Carlos S. Ferreira, Antônio Condino‐Neto, Helder I. Nakaya, Igor Jurišica, Hans D. Ochs, Niels Olsen Saraiva Câmara, Vera Lúcia Garcia Calich, Otávio Cabral-Marques
Software Mentions: 10
Published: over 3 years ago
10.1155/2021/5567392
Construction and Validation of a Novel Prognostic Signature for Intestinal Type of Gastric CancerCited by: 3
Author(s): Fan Zhang, Ewetse Paul Maswikiti, Yucai Wei, Wenzhang Wu, Yumin Li
Software Mentions: 10
Published: over 3 years ago
10.1001/jamanetworkopen.2021.14162
Association of Copy Number Variation Signature and Survival in Patients With Serous Ovarian CancerCited by: 14
Author(s): Ryon P. Graf, Ramez N. Eskander, Leo Brueggeman, Dwayne G. Stupack
Software Mentions: 10
Published: over 3 years ago
10.18632/aging.102434
Development and validation of a metastasis-associated prognostic signature based on single-cell RNA-seq in clear cell renal cell carcinomaCited by: 28
Author(s): Chuanjie Zhang, Hongchao He, Xin Hu, Ao Liu, Da Huang, Yu Xu, Lu Chen, Danfeng Xu
Software Mentions: 10
Published: about 5 years ago
10.1186/s13059-016-0999-8
Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxiaCited by: 64
Author(s): Syed Haider, Alan McIntyre, Ruud G.P.M. van Stiphout, Laura Winchester, Simon Wigfield, Adrian L. Harris, Francesca M. Buffa
Software Mentions: 10
Published: over 8 years ago
10.1155/2020/1468980
Construction and Analysis of lncRNA-Mediated ceRNA Network in Nasopharyngeal Carcinoma Based on Weighted Correlation Network AnalysisCited by: 7
Author(s): Zhenning Zou, Shuguang Liu, Yanping Ha, Bowan Huang
Software Mentions: 10
Published: about 4 years ago
10.7717/peerj.6061
Development and internal validation of a nine-lncRNA prognostic signature for prediction of overall survival in colorectal cancer patientsCited by: 11
Author(s): Zhiqiao Zhang, Qingbo Liu, Peng Wang, Jing Li, Tingshan He, Yanling Ouyang, Yiyan Huang, Weidong Wang
Software Mentions: 10
Published: almost 6 years ago
10.1007/s00262-020-02817-z
Immune signature-based risk stratification and prediction of immune checkpoint inhibitor’s efficacy for lung adenocarcinomaCited by: 85
Author(s): Ming Yi, An‐Ping Li, Linghui Zhou, Qian Chu, Suxia Luo, Kongming Wu
Software Mentions: 10
Published: almost 4 years ago
10.5334/aogh.3278
Derivation of a Contextually-Appropriate COVID-19 Mortality Scale for Low-Resource SettingsCited by: 5
Author(s): Jennifer L Pigoga, Yasein Omer, Lee Wallis
Software Mentions: 10
Published: over 3 years ago
10.1038/s42003-020-1087-x
Combining host-derived biomarkers with patient characteristics improves signature performance in predicting tuberculosis treatment outcomesCited by: 12
Author(s): Dhanasekaran Sivakumaran, Synne Jenum, Mário Vaz, Sumithra Selvam, Tom H. M. Ottenhoff, Mariëlle C. Haks, Stephanus T. Malherbe, Nancy Devlin, Christian Ritz, Harleen M. S. Grewal
Software Mentions: 10
Published: over 4 years ago
10.3389/fgene.2021.739520
Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related GenesCited by: 6
Author(s): Min Liang, Mafeng Chen, Yao Zhong, Satwant Singh, Sandeep Singh
Software Mentions: 10
Published: about 3 years ago
10.1002/cam4.3632
Analyzing and predicting the LNM rate and prognosis of patients with intraductal papillary mucinous neoplasm of the pancreasCited by: 1
Author(s): Chao‐Tao Tang, Bi‐Xia Liu, Youxiang Chen, Chunyan Zeng
Software Mentions: 10
Published: over 3 years ago
10.1007/s00125-018-4641-z
Multiplex proteomics for prediction of major cardiovascular events in type 2 diabetesCited by: 38
Author(s): Christoph Nowak, Axel C. Carlsson, Carl Johan Östgren, Fredrik Nyström, Moudud Alam, Tobias Feldreich, Johan Sundström, Juan-Jesús Carrero, Jerzy Leppert, Pär Hedberg, Egil Henriksen, A. C. C. Cordeiro, Vilmantas Giedraitis, Lars Lind, Erik Ingelsson, Tove Fall, Johan Ärnlöv
Software Mentions: 10
Published: over 6 years ago
10.1002/cam4.4117
A comprehensive analysis of immune infiltration in the tumor microenvironment of osteosarcomaCited by: 17
Author(s): Hao Yang, Liang Zhao, Yang Zhang, Fangfang Li
Software Mentions: 10
Published: over 3 years ago
10.1155/2021/1031906
Development of a Ferroptosis-Related lncRNA Signature to Predict the Prognosis and Immune Landscape of Bladder CancerCited by: 14
Author(s): Ranran Zhou, Jingjing Liang, Haijun Tian, Qi Chen, Cheng Yang, Cundong Liu
Software Mentions: 10
Published: over 3 years ago
10.3389/fonc.2020.01196
Radiomics Analysis on Multiphase Contrast-Enhanced CT: A Survival Prediction Tool in Patients With Hepatocellular Carcinoma Undergoing Transarterial ChemoembolizationCited by: 28
Author(s): Xiang-Pan Meng, Yuancheng Wang, Shenghong Ju, Chun-Qiang Lu, Bin Zhong, Ni Chen, Qi Zhang, Qian Yu, Jingyi Xu, JianSong Ji, Xiuming Zhang, Tianyu Tang, Guanyu Yang, Ziteng Zhao
Software Mentions: 10
Published: over 4 years ago
10.3389/fgene.2021.695130
A Novel Signature Constructed by Immune-Related LncRNA Predicts the Immune Landscape of Colorectal CancerCited by: 7
Author(s): Mengyu Sun, Tongyue Zhang, Yijun Wang, Wenjie Huang, Limin Xia
Software Mentions: 10
Published: over 3 years ago
10.1186/s12935-019-0890-2
Comprehensive bioinformatics analysis reveals potential lncRNA biomarkers for overall survival in patients with hepatocellular carcinoma: an on-line individual risk calculator based on TCGA cohortCited by: 19
Author(s): Zhiqiao Zhang, Yanling Ouyang, Yiyan Huang, Peng Wang, Jing Li, Tingshan He, Qingbo Liu
Software Mentions: 10
Published: over 5 years ago
10.3389/fcell.2021.649265
Multi-Omics Analysis of Anlotinib in Pancreatic Cancer and Development of an Anlotinib-Related Prognostic SignatureCited by: 4
Author(s): Xi Zhang, Yang Liu, Zhen Zhang, Juan Tan, Junjun Zhang, Hao Ou, Jie Li, Zewen Song
Software Mentions: 10
Published: over 3 years ago
10.3389/fcell.2021.731790
Identification and Validation of a Nine-Gene Amino Acid Metabolism-Related Risk Signature in HCCCited by: 34
Author(s): Yajuan Zhao, Junli Zhang, Shuhan Wang, Qianqian Jiang, Ke Xu
Software Mentions: 10
Published: about 3 years ago
10.3389/fcell.2021.722841
Classification of Estrogen Receptor-Positive Breast Cancer Based on Immunogenomic Profiling and Validation at Single-Cell ResolutionCited by: 0
Author(s): Xianxiong Ma, Hengyu Chen, Ming Yang, Zunxiang Ke, Mengyi Wang, Tao Huang, Lei Li
Software Mentions: 10
Published: about 3 years ago
10.1001/jamanetworkopen.2021.10703
Comparative Effectiveness of Machine Learning Approaches for Predicting Gastrointestinal Bleeds in Patients Receiving Antithrombotic TreatmentCited by: 13
Author(s): Jeph Herrin, Neena S. Abraham, Xiaoxi Yao, Peter A. Noseworthy, Jonathan Inselman, Nilay D. Shah, Che Ngufor
Software Mentions: 10
Published: over 3 years ago
10.3389/fbioe.2019.00270
Identification of Prognostic and Metastatic Alternative Splicing Signatures in Kidney Renal Clear Cell CarcinomaCited by: 46
Author(s): Tong Meng, Runzhi Huang, Zhiwei Zeng, Zongqiang Huang, Huabin Yin, Chenchen Jiao, Penghui Yan, Peng Hu, Xiaolong Zhu, Zhenyu Li, Dianwen Song, Jie Zhang, Liming Cheng
Software Mentions: 10
Published: about 5 years ago
10.1371/journal.pone.0254394
Claims-based algorithms for common chronic conditions were efficiently constructed using machine learning methodsCited by: 0
Author(s): Kozo Hara, Yasuki Kobayashi, Jun Tomio, Yuki Ito, Thomas Svensson, Ryo Ikesu, Ung‐il Chung, Akiko Kishi Svensson
Software Mentions: 10
Published: about 3 years ago
10.1371/journal.pgen.1008766
Simultaneous SNP selection and adjustment for population structure in high dimensional prediction modelsCited by: 5
Author(s): Sahir Bhatnagar, Yi Yang, Tianyuan Lu, Erwin Schurr, J. Concepción Loredo-Osti, Marie Forest, Karim Oualkacha, Celia M.T. Greenwood
Software Mentions: 10
Published: over 4 years ago
10.1038/s41598-021-81110-0
G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomesCited by: 9
Author(s): Françoise Le Borgne, Arthur Chatton, Maxime Léger, Rémi Lenain, Yohann Foucher
Software Mentions: 10
Published: almost 4 years ago
10.3390/cells10050977
Identification of 15 lncRNAs Signature for Predicting Survival Benefit of Advanced Melanoma Patients Treated with Anti-PD-1 MonotherapyCited by: 22
Author(s): Jianguo Zhou, Bo Liang, Jianguo Liu, Sanli Jin, Sisi He, Benjamin Frey, Ning Gu, Rainer Fietkau, Markus Hecht, Hu Ma, Udo S. Gaipl
Software Mentions: 10
Published: over 3 years ago
10.18632/aging.104014
Identification of a nomogram based on an 8-lncRNA signature as a novel diagnostic biomarker for head and neck squamous cell carcinomaCited by: 10
Author(s): Rui Mao, Yuanyuan Chen, Lei Xiong, Yanjun Liu, Tongtong Zhang
Software Mentions: 10
Published: about 4 years ago
10.18632/aging.202279
Exploration of the immune cell infiltration-related gene signature in the prognosis of melanomaCited by: 19
Author(s): Yongquan Zeng, Yue Zeng, Hang Yin, Fengxia Chen, Qingqing Wang, Xiaoyan Yu, Youwen Zhou
Software Mentions: 10
Published: almost 4 years ago
10.1186/s12957-021-02162-0
The preoperative prognostic value of the radiomics nomogram based on CT combined with machine learning in patients with intrahepatic cholangiocarcinomaCited by: 16
Author(s): Youyin Tang, Tao Zhang, Xianghong Zhou, Ying Zhao, Hanyue Xu, Yichun Liu, Hang Wang, Zheyu Chen, Xuelei Ma
Software Mentions: 10
Published: over 3 years ago
10.1534/g3.117.300131
CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large-Scale Sequencing DataCited by: 12
Author(s): Markku Kuismin, Jon Ahlinder, Mikko Sillanpää
Software Mentions: 10
Published: about 7 years ago
10.18632/aging.102847
Risk score based on expression of five novel genes predicts survival in soft tissue sarcomaCited by: 21
Author(s): Hao Gu, Zhang Chao, Jia Guo, Min Yang, Hongshan Zhong, Wei Jin, Yang Liu, Liping Gao, Renxiong Wei
Software Mentions: 9
Published: over 4 years ago
10.1186/s12859-015-0537-9
A strategy to build and validate a prognostic biomarker model based on RT-qPCR gene expression and clinical covariatesCited by: 6
Author(s): Maud Tournoud, Audrey Larue, Marie-Angélique Cazalis, Fabienne Venet, Alexandre Pachot, Guillaume Monneret, Alain Lepape, Jean‐Baptiste Veyrieras
Software Mentions: 9
Published: over 9 years ago
10.3389/fcell.2021.653240
CARD-Associated Risk Score Features the Immune Landscape and Predicts the Responsiveness to Anti-PD-1 Therapy in IDH Wild-Type GliomasCited by: 2
Author(s): De-Pei Li, Wanming Hu, Xiaoping Lin, Ji Zhang, Zhenqiang He, Sheng Zhong, Xiaozhong Wen, Peiyu Zhang, Xiaobing Jiang, Hao Duan, Chengcheng Guo, Jian Wang, Jing Zeng, Zhongping Chen, Yonggao Mou, Ke Sai
Software Mentions: 9
Published: over 3 years ago
10.3389/fbioe.2019.00257
The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Mesothelioma With Bone MetastasisCited by: 23
Author(s): Runzhi Huang, Jiawen Wu, Zixuan Zheng, Guanghua Wang, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Haiyun Wang, Qi Lv, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 9
Published: about 5 years ago
10.18632/aging.102424
The construction and analysis of tumor-infiltrating immune cell and ceRNA networks in recurrent soft tissue sarcomaCited by: 29
Author(s): Runzhi Huang, Tong Meng, Rui Chen, Penghui Yan, Jie Zhang, Peng Hu, Xiaolong Zhu, Huabin Yin, Dianwen Song, Zongqiang Huang
Software Mentions: 9
Published: about 5 years ago
10.3389/fcell.2021.718624
Identification of a Novel Prognostic Gene Signature From the Immune Cell Infiltration Landscape of OsteosarcomaCited by: 15
Author(s): Lei Fan, Jingtao Ru, Tao Liu, Chi Ma
Software Mentions: 9
Published: about 3 years ago
10.1038/s41598-019-55563-3
RETRACTED ARTICLE: The diagnostic nomogram of platelet-based score models for hepatic alveolar echinococcosis and atypical liver cancerCited by: 4
Author(s): Qiancheng Du, Yanyan Wang, Shihao Guan, Chenliang Hu, Mengxuan Li, Ling Zhou, Mengzhao Zhang, Yichong Chen, Xuepeng Mei, Jian Sun, Ying Zhou
Software Mentions: 9
Published: almost 5 years ago
10.1042/BSR20201820
Immune-related miRNA signature identifies prognosis and immune landscape in head and neck squamous cell carcinomasCited by: 6
Author(s): Bo Ma, Hui Li, Jie Qiao, Tao Meng, Riyue Yu
Software Mentions: 9
Published: about 4 years ago
10.3389/fmed.2021.604694
A Simple-to-Use Web-Based Calculator for Survival Prediction in Acute Respiratory Distress SyndromeCited by: 0
Author(s): Yong Liu, Jian Liu, Liang Huang
Software Mentions: 9
Published: almost 4 years ago
10.1038/s41598-020-72018-2
Spatial structure, parameter nonlinearity, and intelligent algorithms in constructing pedotransfer functions from large-scale soil legacy dataCited by: 6
Author(s): Poulamee Chakraborty, Bhabani S. Das, Hitesh B. Vasava, Niranjan Panigrahi, Priyabrata Santra
Software Mentions: 9
Published: about 4 years ago
10.1042/BSR20201001
Identification of prognostic and metastasis-related alternative splicing signatures in hepatocellular carcinomaCited by: 11
Author(s): Runzhi Huang, Gaili Yan, Hao Sun, Jie Zhang, Dianwen Song, Rui Kong, Penghui Yan, Peng Hu, Aiqing Xie, Siqiao Wang, Juanwei Zhuang, Huabin Yin, Tong Meng, Zongqiang Huang
Software Mentions: 9
Published: over 4 years ago
10.1097/MD.0000000000020115
The establishment and evaluation of a new model for the prediction of Children B-ALL based on TARGETCited by: 0
Author(s): Xiangyu Gao, Li Chen
Software Mentions: 9
Published: over 4 years ago
10.18632/aging.104064
Clinical and prognostic pan-cancer analysis of m6A RNA methylation regulators in four types of endocrine system tumorsCited by: 29
Author(s): Kai Li, Hui Luo, Hui Luo, Xiao Zhu
Software Mentions: 9
Published: about 4 years ago
10.18632/aging.202748
Development and validation of routine clinical laboratory data derived marker-based nomograms for the prediction of 5-year graft survival in kidney transplant recipientsCited by: 0
Author(s): Yamei Li, Yan Lin, Yang Li, Zhengli Wan, Yang Bai, Xianding Wang, Shumeng Hu, Xiaojuan Wu, Cuili Yang, Jiwen Fan, Hong‐Xi Xu, Lanlan Wang, Ying Shi
Software Mentions: 9
Published: over 3 years ago
10.3389/fgene.2019.00828
The Construction and Comprehensive Analysis of ceRNA Networks and Tumor-Infiltrating Immune Cells in Bone Metastatic MelanomaCited by: 19
Author(s): Runzhi Huang, Zhiwei Zeng, Guangyu Li, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Ruizhi Chang, Xu Zhang, Jie Zhang, Tong Meng, Zongqiang Huang
Software Mentions: 9
Published: about 5 years ago
10.1111/eva.13296
Ageing European lobsters (<i>Homarus gammarus</i>) using DNA methylation of evolutionarily conserved ribosomal DNACited by: 8
Author(s): Eleanor A. Fairfield, David S. Richardson, Carly L. Daniels, Christopher L. Butler, Ewen Bell, Martin I. Taylor
Software Mentions: 9
Published: about 3 years ago