cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1111/mec.15106

The right response at the right time: Exploring helminth immune modulation in sticklebacks by experimental coinfection
Cited by: 10
Author(s): Agnes Piecyk, Marc Ritter, Martin Kalbe
Software Mentions: 9
Published: about 7 years ago

10.1186/s12940-018-0417-7

Swimmer’s itch in Canada: a look at the past and a survey of the present to plan for the future
Cited by: 13
Author(s): Michelle A. Gordy, Tyler P. Cobb, Patrick C. Hanington
Software Mentions: 9
Published: over 7 years ago

10.1371/journal.pone.0193164

Mosquito pornoscopy: Observation and interruption of Aedes aegypti copulation to determine female polyandric event and mixed progeny
Cited by: 10
Author(s): Danilo O. Carvalho, Samira Chuffi, Rafaella Sayuri Ioshino, I. C. S. Marques, Regina Fini, Maria Karina Costa, Helena Rocha Corrêa de Araújo, André Luis Costa-da-Silva, Bianca Burini Kojin, Margareth Lara Capurro
Software Mentions: 9
Published: about 8 years ago

10.1186/s12886-016-0335-9

Systemic confounders affecting serum measurements of omega-3 and -6 polyunsaturated fatty acids in patients with retinal disease
Cited by: 5
Author(s): Anima Bühler, Felicitas Bucher, Michael Augustynik, Jan Wöhrl, Gottfried Martin, Günther Schlunck, Hansjürgen Agostini, Daniel Böhringer, Gerhard Pütz, Andreas Stahl
Software Mentions: 9
Published: over 9 years ago

10.3390/insects12070577

Transcriptome Analyses Provide Insights into the Aggressive Behavior toward Conspecific and Heterospecific in Thitarodes xiaojinensis (Lepidoptera: Hepialidae)
Cited by: 1
Author(s): Zhongchen Rao, Li Cao, Hua Wu, Richou Han
Software Mentions: 9
Published: almost 5 years ago

10.3389/fpls.2021.612843

Development and Validation of Methodology for Estimating Potato Canopy Structure for Field Crop Phenotyping and Improved Breeding
Cited by: 10
Author(s): Filipe Colwell, Jock Souter, Glenn Bryan, Lindsey Compton, Neil Boonham, Ankush Prashar
Software Mentions: 9
Published: over 5 years ago

10.1111/1755-0998.13030

DeviaTE: Assembly‐free analysis and visualization of mobile genetic element composition
Cited by: 26
Author(s): Lukas Weilguny, Robert Kofler
Software Mentions: 9
Published: almost 7 years ago

10.1186/s12967-018-1608-2

NPM1 alternative transcripts are upregulated in acute myeloid and lymphoblastic leukemia and their expression level affects patient outcome
Cited by: 13
Author(s): Luiza Handschuh, Paweł Wojciechowski, Maciej Kaźmierczak, Małgorzata Marcinkowska-Swojak, Magdalena Łuczak, Krzysztof Lewandowski, Mieczysław Komarnicki, Jacek Błażewicz, Marek Figlerowicz, Piotr Kozlowski
Software Mentions: 9
Published: almost 8 years ago

10.1186/s12915-020-00908-y

First evidence of convergent lifestyle signal in reptile skull roof microanatomy
Cited by: 11
Author(s): Roy Ebel, Johannes Müller, Till Ramm, Christy A. Hipsley, Eli Amson
Software Mentions: 9
Published: over 5 years ago

10.1186/s12967-021-02770-0

Hypermethylation of heparanase 2 promotes colorectal cancer proliferation and is associated with poor prognosis
Cited by: 9
Author(s): Hui Zhang, Chang Xu, Shi Chen, Junying Zhang, Ting Qian, Zhuo Wang, Rong Ma, Jianzhong Wu, Feng Jiang, Jifeng Feng
Software Mentions: 9
Published: about 5 years ago

10.1186/s12866-020-1704-3

The canine oral microbiome: variation in bacterial populations across different niches
Cited by: 36
Author(s): Avika Ruparell, Taichi Inui, Ruth Staunton, Corrin Wallis, Oliver Deusch, Lucy J. Holcombe
Software Mentions: 9
Published: over 6 years ago

10.1186/s13007-021-00795-6

Open source 3D phenotyping of chickpea plant architecture across plant development
Cited by: 6
Author(s): William T. Salter, Arjina Shrestha, Margaret M. Barbour
Software Mentions: 9
Published: over 4 years ago

10.1186/s12859-021-04020-y

MeltingPlot, a user-friendly online tool for epidemiological investigation using High Resolution Melting data
Cited by: 4
Author(s): Matteo Perini, Gherard Batisti Biffignandi, Domenico Di Carlo, Ajay Ratan Pasala, Aurora Piazza, Simona Panelli, Gian Vincenzo Zuccotti, Francesco Comandatore
Software Mentions: 9
Published: over 5 years ago

10.18632/oncotarget.27271

Single cell correlation analysis of liquid and solid biopsies in metastatic colorectal cancer
Cited by: 10
Author(s): Anna Sandström Gerdtsson, Jana-Aletta Thiele, Stephanie N. Shishido, Serena Zheng, Randolph Schaffer, Kelly Bethel, Steven A. Curley, Heinz‐Josef Lenz, Diana L. Hanna, Jorgé Nieva, Anand Kolatkar, C.B. Congregado Ruiz, Mariam Rodrı́guez-Lee, Gerard J. Oakley, Jerry S.H. Lee, James Hicks, Peter Kühn
Software Mentions: 9
Published: over 6 years ago

10.3389/fdata.2020.00015

Improving Diagnosis of Depression With XGBOOST Machine Learning Model and a Large Biomarkers Dutch Dataset (n = 11,081)
Cited by: 42
Author(s): Amita Sharma, W. Verbeke
Software Mentions: 9
Published: about 6 years ago

10.3390/microorganisms9061313

Influential Insider: Wolbachia, an Intracellular Symbiont, Manipulates Bacterial Diversity in Its Insect Host
Cited by: 5
Author(s): Morgane Ourry, Agathe Crosland, Valérie Lopez, Stéphane A. P. Derocles, Christophe Mougel, Anne‐Marie Cortesero, Denis Poinsot
Software Mentions: 9
Published: almost 5 years ago

10.1186/s12866-021-02211-4

Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana
Cited by: 10
Author(s): Justin Maire, Linda L. Blackall, Madeleine J. H. van Oppen
Software Mentions: 9
Published: about 5 years ago

10.7554/eLife.49452

Adaptive thermal plasticity enhances sperm and egg performance in a model insect
Cited by: 23
Author(s): Ramakrishnan Vasudeva, Andreas Sutter, Kris Sales, Matthew E. Dickinson, Alyson J. Lumley, Matthew J. G. Gage
Software Mentions: 9
Published: over 6 years ago

10.1042/BSR20202898

Comprehensive analysis reveals a prognostic and therapeutic biomarker CD3D in the breast carcinoma microenvironment
Cited by: 13
Author(s): Zhipeng Zhu, Weipeng Ye, Xiaofang Wu, Sihao Lin, Jiuhua Xu, Lulu Li, Jiayi Li, Haibin Wang, Zhengjie Huang
Software Mentions: 9
Published: over 5 years ago

10.1186/s12864-018-4870-z

WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data
Cited by: 11
Author(s): Joseph C. Devlin, Thomas Battaglia, Martin J. Blaser, Kelly V. Ruggles
Software Mentions: 9
Published: almost 8 years ago

10.1128/AEM.00121-20

Assessment of Soil Features on the Growth of Environmental Nontuberculous Mycobacterial Isolates from Hawai'i
Cited by: 15
Author(s): Cody Glickman, Ravleen Virdi, Nabeeh A. Hasan, L. Elaine Epperson, Leeza Brown, Stephanie N. Dawrs, James Crooks, Edward D. Chan, Michael Strong, Stephen T. Nelson, Jennifer R. Honda
Software Mentions: 9
Published: over 5 years ago

10.7554/eLife.65905

Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
Cited by: 28
Author(s): Sumiko Takao, Lauren Forbes, Masahiro Uni, Shu‐Yuan Cheng, Jose Mario Bello Pineda, Yusuke Tarumoto, Paolo Cifani, Gerard Minuesa, Celine Chen, Michael G. Kharas, Robert K. Bradley, Christopher R. Vakoc, Richard P. Koche, Alex Kentsis
Software Mentions: 9
Published: over 5 years ago

10.7717/peerj.7720

Estimating flowering transition dates from status-based phenological observations: a test of methods
Cited by: 11
Author(s): Shawn D. Taylor
Software Mentions: 9
Published: over 6 years ago

10.3389/fphar.2020.607287

Netosis and Inflammasomes in Large Vessel Occlusion Thrombi
Cited by: 18
Author(s): Stephanie H. Chen, Xavier O. Scott, Yoandy Ferrer Marcelo, Vania W. Almeida, Patricia Blackwelder, Dileep R. Yavagal, Eric C. Peterson, Robert M. Starke, W. Dalton Dietrich, Robert W. Keane, Juan Pablo de Rivero Vaccari
Software Mentions: 9
Published: over 5 years ago

10.7554/eLife.60188

Combined transient ablation and single-cell RNA-sequencing reveals the development of medullary thymic epithelial cells
Cited by: 42
Author(s): Kristen L. Wells, Corey N. Miller, Andreas R. Gschwind, Wei Wu, Jonah D Phipps, Mark S. Anderson, Lars M. Steinmetz
Software Mentions: 9
Published: over 5 years ago

10.3390/ijerph18084052

The Impact of Temperature on the Risk of COVID-19: A Multinational Study
Cited by: 5
Author(s): Ya‐Chen Yang, Jason Lee
Software Mentions: 9
Published: about 5 years ago

10.3390/ijerph18010318

Mapping the Scientific Landscape of Diabetes Research in Malaysia (2000–2018): A Systematic Scientometrics Study
Cited by: 5
Author(s): Kurubaran Ganasegeran, Chee Peng Hor, Mohd Fadzly Amar Jamil, Purnima Devi Suppiah, Juliana Mohd Noor, Norshahida Abdul Hamid, Deik Roy Chuan, Mohd Rizal Abdul Manaf, Alan Swee Hock Ch’ng, Irene Looi
Software Mentions: 9
Published: over 5 years ago

10.1155/2021/8864436

Identification and Validation of a Tumor Microenvironment-Related Gene Signature for Prognostic Prediction in Advanced-Stage Non-Small-Cell Lung Cancer
Cited by: 10
Author(s): Xuening Zhang, Xiaoguang Shi, Hao Zhao, Xiaocan Jia, Yongli Yang
Software Mentions: 9
Published: about 5 years ago

10.1128/mSystems.00897-19

Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters
Cited by: 26
Author(s): Zachary Liechty, Christian Santos‐Medellín, Joseph Edwards, Bao‐Anh Thi Nguyen, David Mikhail, Shane Eason, Gregory C. Phillips, Venkatesan Sundaresan
Software Mentions: 9
Published: over 6 years ago

10.3390/ijerph18020658

Spatial-Temporal Modelling of Disease Risk Accounting for PM2.5 Exposure in the Province of Pavia: An Area of the Po Valley
Cited by: 3
Author(s): Leonardo Trivelli, Paola Borrelli, Ennio Cadum, Enrico Pisoni, Simona Villani
Software Mentions: 9
Published: over 5 years ago

10.2196/10076

Key Elements of mHealth Interventions to Successfully Increase Physical Activity: Meta-Regression
Cited by: 56
Author(s): Lisa V. Eckerstorfer, Norbert K. Tanzer, Claudia Vogrincic-Haselbacher, Gayannée Kedia, Hilmar Brohmer, Isabelle Dinslaken, Katja Corcoran
Software Mentions: 9
Published: over 7 years ago

10.3389/fmolb.2021.567327

Molecular and Clinical Characterization of LIGHT/TNFSF14 Expression at Transcriptional Level via 998 Samples With Brain Glioma
Cited by: 3
Author(s): Ying Yang, Wen Lv, Shi‐Hai Xu, Fei Shi, Aijun Shan, Jin Wang
Software Mentions: 9
Published: almost 5 years ago

10.2196/16442

Quality Awareness and Its Influence on the Evaluation of App Meta-Information by Physicians: Validation Study
Cited by: 8
Author(s): Urs‐Vito Albrecht, Theodor Framke, Ute von Jan
Software Mentions: 9
Published: over 6 years ago

10.3390/cancers13102498

Comparative Transcriptomics of Immune Checkpoint Inhibitor Myocarditis Identifies Guanylate Binding Protein 5 and 6 Dysregulation
Cited by: 16
Author(s): Daniel Finke, Markus Heckmann, Janek Salatzki, Johannes Riffel, Esther Herpel, Lucie Heinzerling, Benjamin Meder, Mirko Völkers, Oliver Müller, Norbert Frey, Hugo A. Katus, Florian Leuschner, Ziya Kaya, Lorenz Lehmann
Software Mentions: 9
Published: about 5 years ago

10.3389/fmolb.2020.604252

Prognostic Model of Colorectal Cancer Constructed by Eight Immune-Related Genes
Cited by: 14
Author(s): Shuting Wen, Lina He, Zhuotai Zhong, Hong Mi, Fengbin Liu
Software Mentions: 9
Published: over 5 years ago

10.1002/aps3.11344

A basic dd <scp>RAD</scp> seq two‐enzyme protocol performs well with herbarium and silica‐dried tissues across four genera
Cited by: 20
Author(s): Ingrid E. Jordon‐Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels
Software Mentions: 9
Published: about 6 years ago

10.3390/cancers13061189

Pan-Cancer Analysis of Human Kinome Gene Expression and Promoter DNA Methylation Identifies Dark Kinase Biomarkers in Multiple Cancers
Cited by: 10
Author(s): Siddesh Southekal, Nitish K. Mishra, Chittibabu Guda
Software Mentions: 9
Published: about 5 years ago

10.3390/cancers11081057

Mining of Self-Organizing Map Gene-Expression Portraits Reveals Prognostic Stratification of HPV-Positive Head and Neck Squamous Cell Carcinoma
Cited by: 21
Author(s): Laura D. Locati, Mara Serena Serafini, Maria Federica Iannò, Andrea Carenzo, Ester Orlandi, Carlo Resteghin, Stefano Cavalieri, Paolo Bossi, Silvana Canevari, Lisa Licitra, Loris De Cecco
Software Mentions: 9
Published: almost 7 years ago

10.3389/fmicb.2020.01536

Low Abundance of Methanotrophs in Sediments of Shallow Boreal Coastal Zones With High Water Methane Concentrations
Cited by: 13
Author(s): Elias Broman, Xiaole Sun, Christian Stranne, Marco Salgado, Stefano Bonaglia, M. C. Geibel, Martin Jakobsson, Alf Norkko, Christoph Humborg, Francisco J. A. Nascimento
Software Mentions: 9
Published: almost 6 years ago

10.3389/fphys.2017.00354

Expression, Localization of SUMO-1, and Analyses of Potential SUMOylated Proteins in Bubalus bubalis Spermatozoa
Cited by: 4
Author(s): Rahim Dad Brohi, Li Wang, Najla Ben Hassine, Jiang Cao, Hira Sajjad Talpur, Di Wu, Chun–Jie Huang, Zia Ur Rehman, Dinesh Bhattarai, Li–Jun Huo
Software Mentions: 9
Published: almost 9 years ago

10.3389/fphar.2021.621359

Compound Dihuang Granule Inhibits Nigrostriatal Pathway Apoptosis in Parkinson’s Disease by Suppressing the JNK/AP-1 Pathway
Cited by: 8
Author(s): Li Wang, Yufang Yang, Long Chen, Zhu-qing He, Dian-yong Bi, Lei Zhang, Yuanfu Xu, Jiancheng He
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-021-94996-7

Avian vampire fly (Philornis downsi) mortality differs across Darwin’s finch host species
Cited by: 3
Author(s): Lauren K. Common, Petra Sumasgutner, Rachael Y. Dudaniec, Diane Colombelli‐Négrel, Sonia Kleindorfer
Software Mentions: 9
Published: almost 5 years ago

10.1128/mBio.00399-21

Salmonella enterica Serovar Typhimurium SPI-1 and SPI-2 Shape the Global Transcriptional Landscape in a Human Intestinal Organoid Model System
Cited by: 12
Author(s): Anna-Lisa E. Lawrence, Basel H. Abuaita, Ryan P. Berger, David R. Hill, Sha Huang, Veda K. Yadagiri, Brooke Bons, Courtney Fields, Christiane E. Wobus, Jason R. Spence, Vincent B. Young, Mary X. O’Riordan
Software Mentions: 9
Published: almost 5 years ago

10.3390/pathogens9080628

Comparative Analysis of the Bacterial and Fungal Communities in the Gut and the Crop of Aedes albopictus Mosquitoes: A Preliminary Study
Cited by: 10
Author(s): Morgane Guégan, Edwige Martin, Claire Valiente Moro
Software Mentions: 9
Published: almost 6 years ago

10.3390/antiox10091424

S-Methyl-L-Ergothioneine to L-Ergothioneine Ratio in Urine Is a Marker of Cystine Lithiasis in a Cystinuria Mouse Model
Cited by: 2
Author(s): Miguel López de Heredia, Lourdes Muñoz, Ciriaco Carru, Salvatore Sotgia, Angelo Zinellu, C. Serra, Amadeu Llebaría, Yukio Kato, Virginia Nunes
Software Mentions: 9
Published: over 4 years ago

10.1186/1471-2288-14-91

Comparing classification methods for diffuse reflectance spectra to improve tissue specific laser surgery
Cited by: 8
Author(s): Alexander Engelhardt, Rajesh Kanawade, Christian Knipfer, Matthias Schmid, Florian Stelzle, Werner Adler
Software Mentions: 9
Published: almost 12 years ago

10.1155/2019/5076467

Prediction of the Outcome for Patients with Glioblastoma with lncRNA Expression Profiles
Cited by: 4
Author(s): Qinglin Liu, Changjing Qi, Gang Li, Wandong Su
Software Mentions: 9
Published: over 6 years ago

10.1371/journal.pone.0177276

Succinct workflows for circulating tumor cells after enrichment: From systematic counting to mutational profiling
Cited by: 11
Author(s): Vernon G. Wong, Josephine Mun Yee Ko, Chi-Tat Lam, Maria Li Lung
Software Mentions: 9
Published: about 9 years ago

10.1038/s41598-021-93699-3

Analysing omics data sets with weighted nodes networks (WNNets)
Cited by: 1
Author(s): Gabriele Tosadori, Dario Di Silvestre, Fausto Spoto, Pierluigi Mauri, Carlo Laudanna, Giovanni Scardoni
Software Mentions: 9
Published: almost 5 years ago

10.15698/mic2021.08.757

Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes
Cited by: 13
Author(s): Maria Paula Rueda‐Mejia, Lukas Nägeli, Stefanie Lutz, Richard D. Hayes, Adithi R. Varadarajan, Igor V. Grigoriev, Christian H. Ahrens, Florian M. Freimoser
Software Mentions: 9
Published: almost 5 years ago

10.1016/j.comppsych.2019.152143

Longitudinal population subgroups of CRP and risk of depression in the ALSPAC birth cohort
Cited by: 11
Author(s): Emanuele F. Osimo, Jan S̆tochl, Stanley Zammit, Glyn Lewis, Peter B. Jones, Golam M. Khandaker
Software Mentions: 9
Published: over 6 years ago

10.3390/metabo11040211

gcProfileMakeR: An R Package for Automatic Classification of Constitutive and Non-Constitutive Metabolites
Cited by: 3
Author(s): Fernando Pérez-Sánz, Victoria Ruiz-Hernández, Marta I. Terry, Sara Arce-Gallego, Julia Weiß, Pedro J. Navarro, Marcos Egea‐Cortines
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-021-92648-4

Transmitting silks of maize have a complex and dynamic microbiome
Cited by: 5
Author(s): Eman M. Khalaf, Anuja Shrestha, Jeffrey Rinne, Michael D. J. Lynch, Charles Shearer, Victor Limay-Rios, L. M. Reid, Manish N. Raizada
Software Mentions: 9
Published: almost 5 years ago

10.1038/s41598-021-92629-7

A cohort study to investigate sex-specific differences in ANCA-associated glomerulonephritis outcomes
Cited by: 8
Author(s): Jennifer Scott, Carolina Canepa, Antonia Buettner, Louise Ryan, Bróna Moloney, Sarah Cormican, Cathal Walsh, Arthur White, Alan D. Salama, Mark A. Little
Software Mentions: 9
Published: almost 5 years ago

10.3389/fmicb.2020.556793

Sulfate Alters the Competition Among Microbiome Members of Sediments Chronically Exposed to Asphalt
Cited by: 3
Author(s): Antonios Michas, Mourad Harir, Marianna Lucio, Gisle Vestergaard, Anne M. Himmelberg, Philippe Schmitt‐Kopplin, Tillmann Lueders, Dimitris G. Hatzinikolaou, Anne Schöler, Ralf Rabus, Michael Schloter
Software Mentions: 9
Published: over 5 years ago

10.1186/s12864-018-5166-z

RIVET: comprehensive graphic user interface for analysis and exploration of genome-wide translatomics data
Cited by: 17
Author(s): Amanda Ernlund, Robert J. Schneider, Kelly V. Ruggles
Software Mentions: 9
Published: over 7 years ago

10.1186/s13071-016-1916-4

Circulation of Dirofilaria repens and Dirofilaria immitis in Moldova
Cited by: 25
Author(s): Tatiana Șuleșco, Heidrun von Thien, Lidia Toderaș, Ion Toderaş, Renke Lühken, Egbert Tannich
Software Mentions: 9
Published: over 9 years ago

10.1038/s41598-017-14576-6

Sequencing genomes from mixed DNA samples - evaluating the metagenome skimming approach in lichenized fungi
Cited by: 37
Author(s): Meiser Anjuli, Jürgen Otte, Imke Schmitt, Francesco Dal Grande
Software Mentions: 9
Published: over 8 years ago

10.1038/s41598-021-91205-3

Diurnal preference and depressive symptomatology: a meta-analysis
Cited by: 22
Author(s): Ray Norbury
Software Mentions: 9
Published: almost 5 years ago

10.1038/s41598-021-88943-9

Characterizing rumen microbiota and CAZyme profile of Indian dromedary camel (Camelus dromedarius) in response to different roughages
Cited by: 17
Author(s): Ankit T. Hinsu, Nilam J. Tulsani, Ketankumar Panchal, Ramesh Pandit, Basanti Jyotsana, Nishant A. Dafale, N. B. Patil, Hemant J. Purohit, Chaitanya Joshi, Subhash J. Jakhesara
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-021-88793-5

Aggressive behaviour is affected by demographic, environmental and behavioural factors in purebred dogs
Cited by: 22
Author(s): Salla Mikkola, Milla Salonen, Jenni Puurunen, Emma Hakanen, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 9
Published: about 5 years ago

10.18632/aging.104064

Clinical and prognostic pan-cancer analysis of m6A RNA methylation regulators in four types of endocrine system tumors
Cited by: 29
Author(s): Kai Li, Hui Luo, Hui Luo, Xiao Zhu
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-021-86638-9

Entomopathogenic fungi as the microbial frontline against the alien Eucalyptus pest Gonipterus platensis in Brazil
Cited by: 17
Author(s): Carolina Jordan, Pâmela Letícia dos Santos, Leiliane Oliveira, Maurício Magalhães Domingues, Bianca Cristina Costa Gêa, M. F. S. Ribeiro, Gabriel Moura Mascarin, Carlos Frederico Wilcken
Software Mentions: 9
Published: about 5 years ago

10.1111/tpj.15190

Subgenome evolution in allotetraploid plants
Cited by: 19
Author(s): Matteo Schiavinato, Alexandrina Bodrug‐Schepers, Juliane C. Dohm, Heinz Himmelbauer
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pone.0149237

Optimizing Viral Discovery in Bats
Cited by: 35
Author(s): Caroline Young, Kevin J. Olival
Software Mentions: 9
Published: over 10 years ago

10.1186/s12859-017-1936-x

Software for rapid time dependent ChIP-sequencing analysis (TDCA)
Cited by: 1
Author(s): Mike Myschyshyn, Marco Farren-Dai, Tien-Jui Chuang, David J. Vocadlo
Software Mentions: 9
Published: over 8 years ago

10.1038/s41598-020-65087-w

Expression of genes of the Pho regulon is altered in Streptomyces coelicolor
Cited by: 22
Author(s): Aarón Millán-Oropeza, Céline Henry, Clara Lejeune, Michelle David, Marie‐Joëlle Virolle
Software Mentions: 9
Published: about 6 years ago

10.1186/s12862-020-01671-y

Sex determination systems in reptiles are related to ambient temperature but not to the level of climatic fluctuation
Cited by: 12
Author(s): Paola Cornejo‐Páramo, Andrés Lira‐Noriega, Ciro Ramírez-Suástegui, Fausto Méndez-de-la-Cruz, Tamás Székely, Araxi O. Urrutia, Diego Cortez
Software Mentions: 9
Published: almost 6 years ago

10.1128/mSystems.00081-18

Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality
Cited by: 16
Author(s): Sara R. Selitsky, David Marron, Lisle E. Mose, Joel S. Parker, Dirk P. Dittmer
Software Mentions: 9
Published: over 7 years ago

10.3390/jintelligence6030030

The Relation of Personality and Intelligence—What Can the Brunswik Symmetry Principle Tell Us?
Cited by: 80
Author(s): André Kretzschmar, Marion Spengler, Anna‐Lena Schubert, Ricarda Steinmayr, Matthias Ziegler
Software Mentions: 9
Published: almost 8 years ago

10.1371/journal.pone.0229887

Characterization of dairy cow rumen bacterial and archaeal communities associated with grass silage and maize silage based diets
Cited by: 4
Author(s): Jueeli D. Vaidya, S. van Gastelen, Hauke Smidt, Caroline M. Plugge, Joan E. Edwards
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-020-59292-w

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
Cited by: 5
Author(s): Johanne Ahrenfeldt, Madina Waisi, Isabella Charlotte Loft, Philip Thomas Lanken Conradsen Clausen, Rosa Lundbye Allesøe, Judit Szarvas, René S. Hendriksen, Frank Møller Aarestrup, Ole Lund
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-020-62186-6

Site-specific molecular analysis of the bacteriota on worn spectacles
Cited by: 4
Author(s): Birgit Fritz, Melanie März, Severin Weis, Siegfried Wahl, Focke Ziemssen, Markus Egert
Software Mentions: 9
Published: about 6 years ago

10.1186/s12936-020-3133-z

Influence of house characteristics on mosquito distribution and malaria transmission in the city of Yaoundé, Cameroon
Cited by: 10
Author(s): Carmène Sandra Ngadjeu, Patricia Doumbe-Belisse, Abdou Talipouo, Landre Djamouko-Djonkam, Parfait Awono-Ambene, Sévilor Kekeunou, Wilson Toussile, Charles S. Wondji, Christophe Antonio-Nkondjio
Software Mentions: 9
Published: over 6 years ago

10.3897/mycokeys.81.66249

Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa
Cited by: 6
Author(s): Peter Meidl, Brendan Furneaux, Kassim I. Tchan, Kerri L. Kluting, Martin Ryberg, Marie-Laure Guissou, Bakary Soro, Aïssata Traoré, Gbamon Konomou, Nourou S. Yorou, Anna Rosling
Software Mentions: 9
Published: almost 5 years ago

10.1186/s12862-021-01806-9

The diversity of opsins in Lake Baikal amphipods (Amphipoda: Gammaridae)
Cited by: 8
Author(s): Polina Drozdova, Alena Kizenko, Alexandra Saranchina, Anton Gurkov, Maria Firulyova, E. B. Govorukhina, Maxim A. Timofeyev
Software Mentions: 9
Published: about 5 years ago

10.3389/fgene.2020.00192

Integrated Analysis Identifies a Nine-microRNA Signature Biomarker for Diagnosis and Prognosis in Colorectal Cancer
Cited by: 31
Author(s): Ziyang Di, Maojun Di, Weihua Fu, Qiang Tang, Yanwei Liu, Peijie Lei, Xinsheng Gu, Tong Liu, Min Sun
Software Mentions: 9
Published: about 6 years ago

10.3389/fgene.2021.691465

ARG2, MAP4K5 and TSTA3 as Diagnostic Markers of Steroid-Induced Osteonecrosis of the Femoral Head and Their Correlation With Immune Infiltration
Cited by: 10
Author(s): Rongguo Yu, Jiayu Zhang, Youguang Zhuo, Hong Xu, Jie Ye, Susu Tang, Nannan Liu, Yiyuan Zhang
Software Mentions: 9
Published: almost 5 years ago

10.1038/s41598-019-56829-6

Integrative Analysis of Axolotl Gene Expression Data from Regenerative and Wound Healing Limb Tissues
Cited by: 18
Author(s): Mustafa Sibai, Cüneyd Parlayan, Pelin Tuğlu, Gürkan Öztürk, Turan Demircan
Software Mentions: 9
Published: over 6 years ago

10.1186/s12867-018-0111-x

Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosis
Cited by: 4
Author(s): Paola M. Boggiatto, Daniel Fitzsimmons, Darrell O. Bayles, David P. Alt, Catherine E. Vrentas, Steven C. Olsen
Software Mentions: 9
Published: almost 8 years ago

10.1038/s41598-020-62842-x

A year in the life of a North Atlantic seabird: behavioural and energetic adjustments during the annual cycle
Cited by: 28
Author(s): Ruth E. Dunn, Sarah Wanless, Francis Daunt, Michael Harris, Jonathan A. Green
Software Mentions: 9
Published: about 6 years ago

10.18632/aging.203455

Construction of an immune-related lncRNA signature as a novel prognosis biomarker for LUAD
Cited by: 9
Author(s): Hang Chen, Wei Shen, Saiqi Ni, Menglu Sang, Shibo Wu, Yinyu Mu, Kaitai Liu, Ni Li, Linwen Zhu, Guodong Xu
Software Mentions: 9
Published: almost 5 years ago

10.1186/s40462-020-00218-6

Riders on the storm: loggerhead sea turtles detect and respond to a major hurricane in the Northwest Atlantic Ocean
Cited by: 5
Author(s): Leah M. Crowe, Joshua M. Hatch, Samir H. Patel, Ronald J. Smolowitz, Heather L. Haas
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0241025

Genome-wide SNP analysis to assess the genetic population structure and diversity of Acrocomia species
Cited by: 13
Author(s): Brenda Gabriela Diaz, Maria Imaculada Zucchi, Alessandro Alves‐Pereira, Caléo Panhoca de Almeida, Aline Costa Lima Moraes, Suelen Alves Vianna, Joaquim Adelino de Azevedo-Filho, Carlos Augusto Colombo
Software Mentions: 9
Published: almost 5 years ago

10.1038/s41598-020-59516-z

Variability in estimated gene expression among commonly used RNA-seq pipelines
Cited by: 37
Author(s): Sonali Arora, Siobhan S. Pattwell, Eric C. Holland, Hamid Bolouri
Software Mentions: 9
Published: over 6 years ago

10.1371/journal.pntd.0006159

Barriers of attendance to dog rabies static point vaccination clinics in Blantyre, Malawi
Cited by: 30
Author(s): Stella Mazeri, Andrew D Gibson, Natascha Meunier, Barend M. deC. Bronsvoort, Ian Handel, Richard J. Mellanby, Luke Gamble
Software Mentions: 9
Published: over 8 years ago

10.1371/journal.pone.0254491

Learning epistatic gene interactions from perturbation screens
Cited by: 2
Author(s): Kieran Elmes, Fabian Schmich, Ewa Szczurek, Jeremy L. Jenkins, Niko Beerenwinkel, Alex Gavryushkin
Software Mentions: 9
Published: almost 5 years ago

10.3389/fpls.2019.01717

Incorporating Local Adaptation Into Species Distribution Modeling of Paeonia mairei, an Endemic Plant to China
Cited by: 27
Author(s): Qihang Chen, Yijia Yin, Rui Zhao, Yong Yang, Jaime A. Teixeira da Silva, Xiaonan Yu
Software Mentions: 9
Published: over 6 years ago

10.1186/s12862-019-1406-3

Specificity of resistance and geographic patterns of virulence in a vertebrate host-parasite system
Cited by: 9
Author(s): Agnes Piecyk, Olivia Roth, Martin Kalbe
Software Mentions: 9
Published: about 7 years ago

10.1186/s12885-020-6638-5

Multiple m6A RNA methylation modulators promote the malignant progression of hepatocellular carcinoma and affect its clinical prognosis
Cited by: 33
Author(s): Nanfang Qu, Sanyu Qin, Xuemei Zhang, Xiaotong Bo, Zhengchun Liu, Chao Tan, Guiqiong Wen, Haixing Jiang
Software Mentions: 9
Published: over 6 years ago

10.1186/s12885-021-07807-7

Molecular subtypes based on DNA methylation predict prognosis in lung squamous cell carcinoma
Cited by: 10
Author(s): Xiushen Li, Kechao Nie, Zhihua Zheng, Ruisheng Zhou, Yu‐Sheng Huang, Zeng Jie Ye, Fan He, Ying Tang
Software Mentions: 9
Published: over 5 years ago

10.15252/msb.20198849

High‐fat diet in a mouse insulin‐resistant model induces widespread rewiring of the phosphotyrosine signaling network
Cited by: 24
Author(s): Antje Dittmann, Norman J. Kennedy, Nina L Soltero, Nader Morshed, Miyeko Mana, Ömer H. Yılmaz, Roger J. Davis, Forest M. White
Software Mentions: 9
Published: almost 7 years ago

10.15252/msb.20177862

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
Cited by: 53
Author(s): Daniela Michlmayr, Theodore R. Pak, Adeeb Rahman, El ad David Amir, Eun Young Kim, Seunghee Kim‐Schulze, Maria Suprun, Michael G. Stewart, Guajira P. Thomas, Ángel Balmaseda, Li Wang, Jun Zhu, Mayte Suárez‐Fariñas, Steven M. Wolinsky, Andrew Kasarskis, Eva Harris
Software Mentions: 9
Published: almost 8 years ago

10.18632/aging.102424

The construction and analysis of tumor-infiltrating immune cell and ceRNA networks in recurrent soft tissue sarcoma
Cited by: 29
Author(s): Runzhi Huang, Tong Meng, Rui Chen, Penghui Yan, Jie Zhang, Peng Hu, Xiaolong Zhu, Huabin Yin, Dianwen Song, Zongqiang Huang
Software Mentions: 9
Published: over 6 years ago

10.3389/fgene.2021.661988

Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma
Cited by: 12
Author(s): Xingte Chen, Lei Wang, Liang Hong, Zhiying Su, Xiaohong Zhong, Han Zhou, Xueqing Zhang, Junxin Wang, Lingdong Shao
Software Mentions: 9
Published: almost 5 years ago

10.1002/1878-0261.12595

Aberrant expression of RSK1 characterizes high‐grade gliomas with immune infiltration
Cited by: 14
Author(s): Glaucia Noeli Maroso Hajj, Fernanda F. da Silva, Bárbara de Bellis, Fernanda C. S. Lupinacci, Hermano Martins Bellato, Juvanier R. Cruz, Claudionor Nogueira Costa Segundo, Igor Vilela Faquini, Leuridan Cavalcante Torres, Paulo Sanematsu, María Dirlei Begnami, Vilma R. Martins, Martín Roffé
Software Mentions: 9
Published: over 6 years ago

10.1186/s12918-016-0349-1

DGCA: A comprehensive R package for Differential Gene Correlation Analysis
Cited by: 156
Author(s): Andrew McKenzie, Igor Katsyv, Won Min Song, Minghui Wang, Bin Zhang
Software Mentions: 9
Published: over 9 years ago

10.3389/fgene.2020.00785

Systematic Evaluation of the Diagnostic and Prognostic Significance of Competitive Endogenous RNA Networks in Prostate Cancer
Cited by: 3
Author(s): Zihu Guo, Han Liang, Yingxue Fu, Ziyin Wu, Yaohua Ma, Yueping Liu, Haiqing Wang, Li Jiang, Shengnan Liang, Zhenzhong Wang, Furong Li, Wei Xiao, Jingbo Wang, Yonghua Wang
Software Mentions: 9
Published: almost 6 years ago

10.3389/fgene.2020.00441

Prognostic Value of a Stemness Index-Associated Signature in Primary Lower-Grade Glioma
Cited by: 28
Author(s): Mingwei Zhang, Xuezhen Wang, Xiaoping Chen, Feibao Guo, Jinsheng Hong
Software Mentions: 9
Published: about 6 years ago

10.3389/fgene.2021.663617

Multi-Omics Data Analyses Construct a Six Immune-Related Genes Prognostic Model for Cervical Cancer in Tumor Microenvironment
Cited by: 10
Author(s): Fangfang Xu, Jiacheng Shen, Shaohua Xu
Software Mentions: 9
Published: about 5 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441