Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: about 1 year ago
4,921 dependent packages
2,865,232 downloads last month

Papers Mentioning ggplot2 11,441

10.1186/s13062-021-00293-8
Common pathways and functional profiles reveal underlying patterns in Breast, Kidney and Lung cancers
Cited by: 7
Author(s): Sergio Romera-Giner, Zoraida Andreu Martínez, Francisco García‐García, Marta R. Hidalgo
Software Mentions: 9
Published: over 3 years ago
10.1038/s41598-020-62842-x
A year in the life of a North Atlantic seabird: behavioural and energetic adjustments during the annual cycle
Cited by: 28
Author(s): Ruth E. Dunn, Sarah Wanless, Francis Daunt, Michael Harris, Jonathan A. Green
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pone.0177276
Succinct workflows for circulating tumor cells after enrichment: From systematic counting to mutational profiling
Cited by: 11
Author(s): Vernon G. Wong, Josephine Mun Yee Ko, Chi-Tat Lam, Maria Li Lung
Software Mentions: 9
Published: over 7 years ago
10.1371/journal.pone.0212024
Spatial and temporal development of deltamethrin resistance in malaria vectors of the Anopheles gambiae complex from North Cameroon
Cited by: 23
Author(s): Stanislas Mandeng, Herman Parfait Awono-Ambene, Jude D. Bigoga, Wolfgang Eyisap Ekoko, Achille Binyang, Michael Piameu, Lili Ranaise Mbakop, Betrand Nono Fesuh, Narcisse Mvondo, Raymond Tabue, Philippe Nwane, R. Mimpfoundi, Jean-Claude Toto, Immo Kleinschmidt, Tessa B. Knox, Abraham Mnzava, Martin J. Donnelly, Étienne Fondjo, Josiane Etang
Software Mentions: 9
Published: almost 6 years ago
10.3389/fbioe.2019.00257
The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Mesothelioma With Bone Metastasis
Cited by: 23
Author(s): Runzhi Huang, Jiawen Wu, Zixuan Zheng, Guanghua Wang, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Haiyun Wang, Qi Lv, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 9
Published: about 5 years ago
10.1371/journal.pone.0229887
Characterization of dairy cow rumen bacterial and archaeal communities associated with grass silage and maize silage based diets
Cited by: 4
Author(s): Jueeli D. Vaidya, S. van Gastelen, Hauke Smidt, Caroline M. Plugge, Joan E. Edwards
Software Mentions: 9
Published: over 4 years ago
10.3389/fdata.2020.00015
Improving Diagnosis of Depression With XGBOOST Machine Learning Model and a Large Biomarkers Dutch Dataset (n = 11,081)
Cited by: 42
Author(s): Amita Sharma, W. Verbeke
Software Mentions: 9
Published: over 4 years ago
10.1038/s41598-021-96362-z
High efficacy of microbial larvicides for malaria vectors control in the city of Yaounde Cameroon following a cluster randomized trial
Cited by: 8
Author(s): Christophe Antonio-Nkondjio, Patricia Doumbe-Belisse, Landre Djamouko-Djonkam, Carmène Sandra Ngadjeu, Abdou Talipouo, Edmond Kopya, Roland Bamou, Marie Paul Audrey Mayi, Nadège Sonhafouo-Chiana, Diane Leslie Nkahe, Raymond Tabue, Dorothy A. Fosah, Jude D. Bigoga, Parfait Awono-Ambene, Charles S. Wondji
Software Mentions: 9
Published: over 3 years ago
10.3389/fonc.2020.573141
Significance of Tumor Mutation Burden in Immune Infiltration and Prognosis in Cutaneous Melanoma
Cited by: 57
Author(s): Kai Kang, Fucun Xie, Jianshan Mao, Yi Bai, Xiang Wang
Software Mentions: 9
Published: about 4 years ago
10.1038/s41421-021-00274-1
Integrating longitudinal clinical laboratory tests with targeted proteomic and transcriptomic analyses reveal the landscape of host responses in COVID-19
Cited by: 21
Author(s): Yun Tan, Wei Zhang, Zhaoqin Zhu, Na Qiao, Yun Ling, Mingquan Guo, Tong Yin, Hai Fang, Xiaoguang Xu, Gang Lu, Peipei Zhang, Shuangshuang Yang, Ziyu Fu, Dongguo Liang, Yinyin Xie, Ruihong Zhang, Lu Jiang, Shuting Yu, Jing Lu, Fang-Ying Jiang, Jian Chen, Chenlu Xiao, Shengyue Wang, Shuo Chen, Xiu‐Wu Bian, Hongzhou Lu, Feng Liu, Sai‐Juan Chen
Software Mentions: 9
Published: over 3 years ago
10.15698/mic2021.08.757
Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes
Cited by: 13
Author(s): Maria Paula Rueda‐Mejia, Lukas Nägeli, Stefanie Lutz, Richard D. Hayes, Adithi R. Varadarajan, Igor V. Grigoriev, Christian H. Ahrens, Florian M. Freimoser
Software Mentions: 9
Published: over 3 years ago
10.3390/s19122772
Extracting Value from Industrial Alarms and Events: A Data-Driven Approach Based on Exploratory Data Analysis
Cited by: 16
Author(s): Aguinaldo Bezerra, Ivanovitch Silva, Luiz Affonso Guedes, Diego R. C. Silva, Gustavo Bezerra Paz Leitão, Kaku Saito
Software Mentions: 9
Published: over 5 years ago
10.3389/fmicb.2021.654135
Gullies and Moraines Are Islands of Biodiversity in an Arid, Mountain Landscape, Asgard Range, Antarctica
Cited by: 3
Author(s): Adam J. Solon, Claire F. Mastrangelo, Lara Vimercati, Pacifica Sommers, John L. Darcy, Eli M. S. Gendron, Dorota L. Porazinska, Steven K. Schmidt
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.ppat.1009374
SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B.1 lineage variant linked to a mass gathering event
Cited by: 31
Author(s): Madlen Stange, Alfredo Mari, Tim Roloff, Helena M. B. Seth-Smith, Michael Schweitzer, Myrta Brunner, Karoline Leuzinger, Kirstine Kobberøe Søgaard, Alexander Gensch, Sarah Tschudin‐Sutter, Simon Fuchs, Julia Bielicki, Hans Pargger, Martin Siegemund, Christian H. Nickel, Roland Bingisser, Michael Osthoff, Stefano Bassetti, Rita Schneider-Sliwa, Manuel Battegay, Hans H. Hirsch, Adrian Egli
Software Mentions: 9
Published: over 3 years ago
10.1038/s41598-019-56829-6
Integrative Analysis of Axolotl Gene Expression Data from Regenerative and Wound Healing Limb Tissues
Cited by: 18
Author(s): Mustafa Sibai, Cüneyd Parlayan, Pelin Tuğlu, Gürkan Öztürk, Turan Demircan
Software Mentions: 9
Published: almost 5 years ago
10.1016/j.celrep.2020.108546
RTEL1 Regulates G4/R-Loops to Avert Replication-Transcription Collisions
Cited by: 33
Author(s): Panagiotis Kotsantis, Sandra Segura-Bayona, Pol Margalef, Paulina Marzec, Phil Ruis, Graeme Hewitt, Roberto Bellelli, Harshil Patel, Robert Goldstone, Anna R. Poetsch, Simon J. Boulton
Software Mentions: 9
Published: almost 4 years ago
10.1016/j.celrep.2021.109698
Transitions in lineage specification and gene regulatory networks in hematopoietic stem/progenitor cells over human development
Cited by: 33
Author(s): Anindita Roy, Guanlin Wang, Deena Iskander, Sorcha O’Byrne, Natalina E. Elliott, Jennifer O’Sullivan, Gemma Buck, Elisabeth F. Heuston, Wei Wen, Alba Rodríguez-Meira, Peng Hua, Anastasios Karadimitris, Adam J. Mead, David M. Bodine, Irene Roberts, Bethan Psaila, Supat Thongjuea
Software Mentions: 9
Published: about 3 years ago
10.3389/fimmu.2019.00413
Transcriptional Profiles of California Sea Lion Peripheral NK and CD+8 T Cells Reflect Ecological Regionalization and Infection by Oncogenic Viruses
Cited by: 4
Author(s): Ignacio Peñín, Mónica Eugenia Figueroa-Cabañas, Fabiola Guerrero-de la Rosa, Luis A. Soto-García, Roberto Álvarez-Martínez, Adriana Flores-Morán, Karina Acevedo‐Whitehouse
Software Mentions: 9
Published: over 5 years ago
10.1002/ece3.6079
Species specificity and intraspecific variation in the chemical profiles of <i>Heliconius</i> butterflies across a large geographic range
Cited by: 28
Author(s): Kathy Darragh, Gabriela Montejo‐Kovacevich, Krzysztof M. Kozak, Colin R. Morrison, Clarisse M. É. Figueiredo, Jonathan Stuart Ready, Camilo Salazar, Mauricio Linares, Kelsey J. R. P. Byers, Richard M. Merrill, W. Owen McMillan, Stefan Schulz, Chris D. Jiggins
Software Mentions: 9
Published: over 4 years ago
10.3389/fpls.2019.00910
Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms
Cited by: 57
Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo B. Ferreira
Software Mentions: 9
Published: over 5 years ago
10.1371/journal.pbio.3001158
Disparate temperature-dependent virus–host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium
Cited by: 66
Author(s): Philip V’kovski, Mitra Gultom, Jenna N. Kelly, Silvio Steiner, Julie Russeil, Bastien Mangeat, Elisa Cora, Joern Pezoldt, Melle Holwerda, Annika Kratzel, Laura Laloli, Manon Wider, Jasmine Portmann, Thao Thi Phuong Tran, Nadine Ebert, Hanspeter Stalder, Rune Hartmann, Vincent Gardeux, Daniel Alpern, Bart Deplancke, Volker Thiel, Ronald Dijkman
Software Mentions: 9
Published: over 3 years ago
10.3389/fmicb.2018.01323
Exposure to Arsenic Alters the Microbiome of Larval Zebrafish
Cited by: 37
Author(s): Dylan Dahan, Brooke A. Jude, Regina Lamendella, Felicia Keesing, Gabriel G. Perron
Software Mentions: 9
Published: over 6 years ago
10.1007/s10270-019-00721-4
Modeling compliance specifications in linear temporal logic, event processing language and property specification patterns: a controlled experiment on understandability
Cited by: 2
Author(s): Christoph Czepa, Amirali Amiri, Evangelos Ntentos, Uwe Zdun
Software Mentions: 9
Published: almost 6 years ago
10.3389/fpls.2021.638738
Capturing and Selecting Senescence Variation in Wheat
Cited by: 11
Author(s): Elizabeth A. Chapman, Simon Orford, Jean-Luc Da Lage, Simon Griffiths
Software Mentions: 9
Published: over 3 years ago
10.1098/rspb.2018.0270
Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure
Cited by: 20
Author(s): Eli Amson, Guillaume Billet, Christian de Muizon
Software Mentions: 9
Published: over 6 years ago
10.1371/journal.pone.0149237
Optimizing Viral Discovery in Bats
Cited by: 35
Author(s): Caroline Young, Kevin J. Olival
Software Mentions: 9
Published: almost 9 years ago
10.1186/s13041-020-00681-7
Brain transcriptome analysis reveals subtle effects on mitochondrial function and iron homeostasis of mutations in the SORL1 gene implicated in early onset familial Alzheimer’s disease
Cited by: 22
Author(s): Karissa Barthelson, Stephen Pederson, Morgan Newman, Michael Lardelli
Software Mentions: 9
Published: about 4 years ago
10.1073/pnas.2104254118
Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution
Cited by: 22
Author(s): Nicolas Blavet, Hua Yang, Handong Su, Pavel Solanský, Ryan N. Douglas, Miroslava Karafiátová, Lucie Šimková, Jing Zhang, Yalin Liu, Jie Hou, Xiaowen Shi, Chen Chen, Mohamed El-Walid, Morgan McCaw, Patrice S. Albert, Zhi Gao, Changzeng Zhao, Gil Ben-Zvi, Lior Glick, Guy Kol, Jinghua Shi, Jan Vrána, Hana Šimková, Jonathan C. Lamb, Kathleen J. Newton, R. Kelly Dawe, Jaroslav Doležel, Tieming Ji, Kobi Baruch, Fangpu Han, James A. Birchler, Jan Bartoš
Software Mentions: 9
Published: over 3 years ago
10.3390/metabo10030086
Local Phenomena Shape Backyard Soil Metabolite Composition
Cited by: 9
Author(s): Tra D Nguyen, Mahbobeh Lesani, Ines Forrest, Yunpeng Lan, Danya A. Dean, Quentin M. R. Gibaut, Yanting Guo, Ekram Hossain, Marcela Olvera, Hannah Panlilio, Adwaita R. Parab, Chao‐Yi Wu, Jean A. Bernatchez, Robert H. Cichewicz, Laura-Isobel McCall
Software Mentions: 9
Published: over 4 years ago
10.1093/molbev/msaa266
Genomic Adaptations to Salinity Resist Gene Flow in the Evolution of Floridian Watersnakes
Cited by: 10
Author(s): Rhett M. Rautsaw, Tristan D. Schramer, Rachel Acuña, Lindsay N Arick, Mark DiMeo, Kathryn P. Mercier, Michael Schrum, Andrew J. Mason, Mark J. Margres, Jason L. Strickland, Christopher L. Parkinson
Software Mentions: 9
Published: about 4 years ago
10.1073/pnas.2100542118
Self-mediated positive selection of T cells sets an obstacle to the recognition of nonself
Cited by: 9
Author(s): Balázs Koncz, Gergő Mihály Balogh, Benjamin Tamás Papp, Leó Asztalos, Lajos Kemény, Máté Manczinger
Software Mentions: 9
Published: about 3 years ago
10.1016/j.celrep.2020.108308
Developmental Gene Expression Differences between Humans and Mammalian Models
Cited by: 34
Author(s): Margarida Cardoso-Moreira, Ioannis Sarropoulos, Britta Velten, Matthew Mort, David Neil Cooper, Wolfgang Huber, Henrik Kaessmann
Software Mentions: 9
Published: about 4 years ago
10.1371/journal.ppat.1009459
Specialized 16SrX phytoplasmas induce diverse morphological and physiological changes in their respective fruit crops
Cited by: 9
Author(s): Jannicke Gallinger, Kerstin Zikeli, Matthias R. Zimmermann, Louisa Görg, Axel Mithöfer, Michael Reichelt, E. Seemüller, Jürgen Gross, Alexandra C. U. Furch
Software Mentions: 9
Published: over 3 years ago
10.3390/jof6030182
ATAC-Seq Identifies Chromatin Landscapes Linked to the Regulation of Oxidative Stress in the Human Fungal Pathogen Candida albicans
Cited by: 14
Author(s): Sabrina Jenull, Michael Tscherner, Theresia Mair, Karl Kuchler
Software Mentions: 9
Published: about 4 years ago
10.1186/s12864-016-2886-9
OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis
Cited by: 32
Author(s): Alfredo Rago, Donald G. Gilbert, Jeong Hyeon Choi, Timothy B. Sackton, Xiaozhu Wang, Yogeshwar D. Kelkar, John H. Werren, John K. Colbourne
Software Mentions: 9
Published: over 8 years ago
10.1371/journal.ppat.1009068
Modeling intra-mosquito dynamics of Zika virus and its dose-dependence confirms the low epidemic potential of Aedes albopictus
Cited by: 16
Author(s): Sébastian Lequime, Jean-Sébastien Dehecq, Séverine Matheus, Franck de Laval, Lionel Alméras, Sébastien Briolant, Albin Fontaine
Software Mentions: 9
Published: almost 4 years ago
10.3389/fpsyt.2019.00041
A Data Science-Based Analysis Points at Distinct Patterns of Lipid Mediator Plasma Concentrations in Patients With Dementia
Cited by: 6
Author(s): Robert Gurke, Semra Etyemez, David Prvulovic, Dominique Thomas, Stefanie C. Fleck, Andreas Reif, Gerd Geißlinger, Jörn Lötsch
Software Mentions: 9
Published: almost 6 years ago
10.1371/journal.pbio.3000202
PlotsOfData—A web app for visualizing data together with their summaries
Cited by: 394
Author(s): Marten Postma, Joachim Goedhart
Software Mentions: 9
Published: over 5 years ago
10.1371/journal.ppat.1009577
Epigenomic regulation of human T-cell leukemia virus by chromatin-insulator CTCF
Cited by: 11
Author(s): Xiaogang Cheng, Ancy Joseph, Victor Castro, Alice Chen-Liaw, Zachary L. Skidmore, Takaharu Ueno, Jun–ichi Fujisawa, Daniel A. Rauch, Grant A. Challen, Michael P. Martinez, Patrick Green, Malachi Griffith, Jacqueline E. Payton, John Edwards, Lee Ratner
Software Mentions: 9
Published: over 3 years ago
10.1186/s41065-021-00196-8
Dynamic co-expression modular network analysis in nonalcoholic fatty liver disease
Cited by: 4
Author(s): Jing Zheng, WU Hui-zhong, Zhiying Zhang, Songqiang Yao
Software Mentions: 9
Published: over 3 years ago
10.1080/19490976.2021.1957408
Imbalance of the intestinal virome and altered viral-bacterial interactions caused by a conditional deletion of the vitamin D receptor
Cited by: 14
Author(s): Jilei Zhang, Yongguo Zhang, Yinglin Xia, Jun Sun
Software Mentions: 9
Published: almost 4 years ago
10.3389/fpsyg.2020.533593
Students’ Motivation and Affection Profiles and Their Relation to Mathematics Achievement, Persistence, and Behaviors
Cited by: 7
Author(s): Feiya Xiao, Li Sun
Software Mentions: 9
Published: almost 4 years ago
10.7717/peerj.10008
A model of twenty-three metabolic-related genes predicting overall survival for lung adenocarcinoma
Cited by: 3
Author(s): Zhenyu Zhao, Boxue He, Qidong Cai, Pengfei Zhang, Ping Xiong, Yuqian Zhang, Hui Xie, Xiang Wang
Software Mentions: 9
Published: about 4 years ago
10.1016/j.ebiom.2015.09.027
Distinct Transcriptional and Anti-Mycobacterial Profiles of Peripheral Blood Monocytes Dependent on the Ratio of Monocytes: Lymphocytes
Cited by: 58
Author(s): Vivek Naranbhai, Helen A. Fletcher, Rachel Tanner, Matthew K. O’Shea, Helen McShane, Benjamin P. Fairfax, Julian C. Knight, Adrian V. S. Hill
Software Mentions: 9
Published: about 9 years ago
10.7717/peerj.5217
Avian community characteristics and demographics reveal how conservation value of regenerating tropical dry forest changes with forest age
Cited by: 8
Author(s): Steven C. Latta, Nathan L. Brouwer, Danilo Mejía, María M. Paulino
Software Mentions: 9
Published: over 6 years ago
10.1038/s41598-017-14576-6
Sequencing genomes from mixed DNA samples - evaluating the metagenome skimming approach in lichenized fungi
Cited by: 37
Author(s): Meiser Anjuli, Jürgen Otte, Imke Schmitt, Francesco Dal Grande
Software Mentions: 9
Published: about 7 years ago
10.1371/journal.pone.0193164
Mosquito pornoscopy: Observation and interruption of Aedes aegypti copulation to determine female polyandric event and mixed progeny
Cited by: 10
Author(s): Danilo O. Carvalho, Samira Chuffi, Rafaella Sayuri Ioshino, I. C. S. Marques, Regina Fini, Maria Karina Costa, Helena Rocha Corrêa de Araújo, André Luis Costa-da-Silva, Bianca Burini Kojin, Margareth Lara Capurro
Software Mentions: 9
Published: over 6 years ago
10.3390/nu13082666
Improvement of Cutaneous Wound Healing via Topical Application of Heat-Killed Lactococcus chungangensis CAU 1447 on Diabetic Mice
Cited by: 20
Author(s): YoHan Nam, Jonghwa Kim, Jihye Baek, Wonyong Kim
Software Mentions: 9
Published: over 3 years ago
10.7717/peerj.9017
Population structure and microbial community diversity of two common tetillid sponges in a tropical reef lagoon
Cited by: 10
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Niño Posadas, Dana P. Manogan, Patrick C. Cabaitan, Cecilia Conaco
Software Mentions: 9
Published: over 4 years ago
10.3390/ijms22136855
Concentrated Raw Fibers Enhance the Fiber-Degrading Capacity of a Synthetic Human Gut Microbiome
Cited by: 3
Author(s): Alex Steimle, Mareike Neumann, Erica T. Grant, Jonathan D. Turner, Mahesh S. Desai
Software Mentions: 9
Published: over 3 years ago
10.1093/gigascience/giy083
Clustering trees: a visualization for evaluating clusterings at multiple resolutions
Cited by: 353
Author(s): Luke Zappia, Alicia Oshlack
Software Mentions: 9
Published: over 6 years ago
10.3390/ijms22116160
Spatially Enriched Paralog Rearrangements Argue Functionally Diverse Ribosomes Arise during Cold Acclimation in Arabidopsis
Cited by: 10
Author(s): Federico Martinez‐Seidel, Olga Beine-Golovchuk, Yin-Chen Hsieh, Kheloud El Eshraky, Michał Górka, Bo-Eng Cheong, Erika Vanessa Jiménez-Posada, Dirk Walther, Aleksandra Skirycz, Ute Roessner, Joachim Kopka, Alexandre Augusto Pereira Firmino
Software Mentions: 9
Published: over 3 years ago
10.3389/fmicb.2021.616956
Assembly Processes and Co-occurrence Patterns of Abundant and Rare Bacterial Community in the Eastern Indian Ocean
Cited by: 9
Author(s): Liuyang Li, Laxman Pujari, Chao Wu, Dongyang Huang, Yuqiu Wei, Congcong Guo, Guicheng Zhang, Wenzhe Xu, Haijiao Liu, Xingzhou Wang, Min Wang, Jun Sun
Software Mentions: 9
Published: over 3 years ago
10.1016/j.celrep.2020.107732
Variable Outcomes in Neural Differentiation of Human PSCs Arise from Intrinsic Differences in Developmental Signaling Pathways
Cited by: 43
Author(s): Alessio Strano, Eleanor J. Tuck, Victoria Stubbs, Frederick J. Livesey
Software Mentions: 9
Published: over 4 years ago
10.1155/2021/9911184
Identification of Disease-Specific Hub Biomarkers and Immune Infiltration in Osteoarthritis and Rheumatoid Arthritis Synovial Tissues by Bioinformatics Analysis
Cited by: 7
Author(s): Fei Sun, Jian Zhou, Peiyu Pu, Chen Qiu, Jia rui Cao, Hao Peng
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pcbi.1008778
Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells
Cited by: 4
Author(s): Jared Brown, Christopher Barry, Matthew T. Schmitz, Cara Argus, Jennifer M. Bolin, Michael P. Schwartz, Amy Van Aartsen, John Steill, Scott Swanson, Ron Stewart, James A. Thomson, Christina Kendziorski
Software Mentions: 9
Published: over 3 years ago
10.1155/2021/6290261
Identification of a Tumor Microenvironment-Related Gene Signature Indicative of Disease Prognosis and Treatment Response in Colon Cancer
Cited by: 24
Author(s): Wenzheng Chen, Jianfeng Huang, Jianbo Xiong, Pengcheng Fu, Changyu Chen, Yi Liu, Zhengrong Li, Zhigang Jie, Yi Cao
Software Mentions: 9
Published: over 3 years ago
10.1038/s41598-020-65087-w
Expression of genes of the Pho regulon is altered in Streptomyces coelicolor
Cited by: 22
Author(s): Aarón Millán-Oropeza, Céline Henry, Clara Lejeune, Michelle David, Marie‐Joëlle Virolle
Software Mentions: 9
Published: over 4 years ago
10.3390/ijms22073411
Insights of Phenolic Pathway in Fruits: Transcriptional and Metabolic Profiling in Apricot (Prunus armeniaca)
Cited by: 6
Author(s): Helena Gómez-Martínez, Francisco Gil-Muñoz, Almudena Bermejo, Elena Zuriaga, M. L. Badenes
Software Mentions: 9
Published: over 3 years ago
10.1186/s13073-021-00902-1
Integrative statistical analyses of multiple liquid biopsy analytes in metastatic breast cancer
Cited by: 16
Author(s): Corinna Keup, Vinay Suryaprakash, Siegfried Hauch, Markus Storbeck, Peter F. Hahn, Markus Sprenger-Haussels, Hans‐Christian Kolberg, Mitra Tewes, Oliver Hoffmann, Rainer Kimmig, Sabine Kasimir‐Bauer
Software Mentions: 9
Published: over 3 years ago
10.3390/ijms22063200
Identification of Transcriptomic Differences between Lower Extremities Arterial Disease, Abdominal Aortic Aneurysm and Chronic Venous Disease in Peripheral Blood Mononuclear Cells Specimens
Cited by: 4
Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Przemysław Kołodziej, Jolanta Szymańska, Bartosz J. Płachno, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 9
Published: over 3 years ago
10.1186/s12936-020-3133-z
Influence of house characteristics on mosquito distribution and malaria transmission in the city of Yaoundé, Cameroon
Cited by: 10
Author(s): Carmène Sandra Ngadjeu, Patricia Doumbe-Belisse, Abdou Talipouo, Landre Djamouko-Djonkam, Parfait Awono-Ambene, Sévilor Kekeunou, Wilson Toussile, Charles S. Wondji, Christophe Antonio-Nkondjio
Software Mentions: 9
Published: almost 5 years ago
10.3390/metabo11040211
gcProfileMakeR: An R Package for Automatic Classification of Constitutive and Non-Constitutive Metabolites
Cited by: 3
Author(s): Fernando Pérez-Sánz, Victoria Ruiz-Hernández, Marta I. Terry, Sara Arce-Gallego, Julia Weiß, Pedro J. Navarro, Marcos Egea‐Cortines
Software Mentions: 9
Published: over 3 years ago
10.3390/ijms21145044
Epigenome Wide Association and Stochastic Epigenetic Mutation Analysis on Cord Blood of Preterm Birth
Cited by: 10
Author(s): Elena Spada, Luciano Calzari, Luigi Corsaro, Teresa Fazia, Monica Mencarelli, Anna Maria Di Blasio, Luisa Bernardinelli, G. Zangheri, Michele Vignali, Davide Gentilini
Software Mentions: 9
Published: over 4 years ago
10.3389/fpsyg.2018.02327
Use or Consequences: Probing the Cognitive Difference Between Two Measures of Divergent Thinking
Cited by: 44
Author(s): Richard W. Hass, Roger E. Beaty
Software Mentions: 9
Published: about 6 years ago
10.3390/ijms21134763
The Differential Effect of Carbon Dots on Gene Expression and DNA Methylation of Human Embryonic Lung Fibroblasts as a Function of Surface Charge and Dose
Cited by: 15
Author(s): Michal Šíma, Kristýna Vrbová, Táňa Závodná, K. Hoňková, Irena Chvojková, Antonín Ambrož, Jǐŕı Kléma, Andrea Rössnerová, Kateřina Poláková, Tomáš Malina, Jan Belza, Jan Topinka, Pavel Rőssner
Software Mentions: 9
Published: over 4 years ago
10.3389/fpsyg.2021.636129
Psychological Differences Among Healthcare Workers of a Rehabilitation Institute During the COVID-19 Pandemic: A Two-Step Study
Cited by: 16
Author(s): Anna Panzeri, Silvia Rossi Ferrario, Paola Cerutti
Software Mentions: 9
Published: over 3 years ago
10.1016/j.molcel.2020.04.008
Single-Cell Analyses Reveal Megakaryocyte-Biased Hematopoiesis in Myelofibrosis and Identify Mutant Clone-Specific Targets
Cited by: 101
Author(s): Bethan Psaila, Guanlin Wang, Alba Rodríguez-Meira, Rong Li, Elisabeth F. Heuston, Lauren C. Murphy, Daniel Yee, Ian S. Hitchcock, Nikolaos Sousos, Jennifer O’Sullivan, Stacie M. Anderson, Yotis A. Senis, Olga K. Weinberg, Monica L. Calicchio, Deena Iskander, Daniel Royston, Dragana Milojković, Irene Roberts, David M. Bodine, Supat Thongjuea, Adam J. Mead
Software Mentions: 9
Published: over 4 years ago
10.7717/peerj.6746
Deterministic processes dominate soil microbial community assembly in subalpine coniferous forests on the Loess Plateau
Cited by: 19
Author(s): Pengyu Zhao, Jiabing Bao, Xue Wang, Yi Liu, Cui Li, Bo Chai
Software Mentions: 9
Published: over 5 years ago
10.3389/fpsyg.2019.02174
Expanding the Map of Intrinsic and Extrinsic Aspirations Using Network Analysis and Multidimensional Scaling: Examining Four New Aspirations
Cited by: 24
Author(s): Frank Martela, Emma L. Bradshaw, Richard M. Ryan
Software Mentions: 9
Published: about 5 years ago
10.1016/j.celrep.2019.01.041
RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types
Cited by: 510
Author(s): Gianni Monaco, Bernett Lee, Weili Xu, Seri Mustafah, You Yi Hwang, Christophe Carré, Nicolas Burdin, Lucian Visan, Michele Ceccarelli, Michael Poidinger, Alfred Zippelius, João Pedro de Magalhães, Anis Larbi
Software Mentions: 9
Published: almost 6 years ago
10.1038/s41598-021-81773-9
Verifying explainability of a deep learning tissue classifier trained on RNA-seq data
Cited by: 26
Author(s): Melvyn Yap, Rebecca L. Johnston, Helena Foley, Samual MacDonald, Olga Kondrashova, Khoa Tran, Kátia Nones, Lambros T. Koufariotis, Cameron Bean, John V. Pearson, Maciej Trzaskowski, Nicola Waddell
Software Mentions: 9
Published: almost 4 years ago
10.1371/journal.pone.0188564
Widespread local chronic stressors in Caribbean coastal habitats
Cited by: 10
Author(s): Iliana Chollett, Rachel Collin, Carolina Bastidas, Aldo Cróquer, Peter M. H. Gayle, Eric Jordán-Dahlgren, Karen Koltes, Hazel A. Oxenford, Alberto Rodríguez-Ramírez, Ernesto Weil, Jahson Berhane Alemu, David Bone, Kenneth C. Buchan, Marcia Creary Ford, Edgar Escalante‐Mancera, Jaime Garzón-Ferreira, Héctor M. Guzmán, Björn Kjerfve, Eduardo Klein, Croy McCoy, Arthur C. Potts, Francisco Ruiz-Rentería, Struan R. Smith, John Tschirky, Jorge Cortés
Software Mentions: 9
Published: almost 7 years ago
10.2196/10076
Key Elements of mHealth Interventions to Successfully Increase Physical Activity: Meta-Regression
Cited by: 56
Author(s): Lisa V. Eckerstorfer, Norbert K. Tanzer, Claudia Vogrincic-Haselbacher, Gayannée Kedia, Hilmar Brohmer, Isabelle Dinslaken, Katja Corcoran
Software Mentions: 9
Published: about 6 years ago
10.1186/s12864-018-4870-z
WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data
Cited by: 11
Author(s): Joseph C. Devlin, Thomas Battaglia, Martin J. Blaser, Kelly V. Ruggles
Software Mentions: 9
Published: over 6 years ago
10.1038/s41598-020-76792-x
Energy depletion and opportunistic microbial colonisation in white syndrome lesions from corals across the Indo-Pacific
Cited by: 3
Author(s): Hillary A. Smith, Jessica A. Conlan, F. Joseph Pollock, Naohiro Wada, Amanda Shore, Julia Yun-Hsuan Hung, Greta S. Aeby, Bette L. Willis, David S. Francis, David G. Bourne
Software Mentions: 9
Published: about 4 years ago
10.5811/westjem.2016.5.29957
Emergency Department Length of Stay for Maori and European Patients in New Zealand
Cited by: 6
Author(s): D Prisk, Godfrey Aj, Amy E. Lawrence
Software Mentions: 9
Published: over 8 years ago
10.3390/microorganisms9061313
Influential Insider: Wolbachia, an Intracellular Symbiont, Manipulates Bacterial Diversity in Its Insect Host
Cited by: 5
Author(s): Morgane Ourry, Agathe Crosland, Valérie Lopez, Stéphane A. P. Derocles, Christophe Mougel, Anne‐Marie Cortesero, Denis Poinsot
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0254356
Endpoint PCR coupled with capillary electrophoresis (celPCR) provides sensitive and quantitative measures of environmental DNA in singleplex and multiplex reactions
Cited by: 7
Author(s): Bettina Thalinger, Yannick Pütz, Michael Traugott
Software Mentions: 9
Published: over 3 years ago
10.3389/fgene.2021.691465
ARG2, MAP4K5 and TSTA3 as Diagnostic Markers of Steroid-Induced Osteonecrosis of the Femoral Head and Their Correlation With Immune Infiltration
Cited by: 10
Author(s): Rongguo Yu, Jiayu Zhang, Youguang Zhuo, Hong Xu, Jie Ye, Susu Tang, Nannan Liu, Yiyuan Zhang
Software Mentions: 9
Published: over 3 years ago
10.1534/g3.120.401436
The Wheat GENIE3 Network Provides Biologically-Relevant Information in Polyploid Wheat
Cited by: 18
Author(s): Sophie A Harrington, Anna E Backhaus, Ajit Singh, Keywan Hassani‐Pak, Cristóbal Uauy
Software Mentions: 9
Published: about 4 years ago
10.1371/journal.pone.0192157
Tissue analyses reveal a potential immune-adjuvant function of FAP-1 positive fibroblasts in non-small cell lung cancer
Cited by: 30
Author(s): Thomas K. Kilvaer, Mehrdad Rakaee, Turid Hellevik, Arne Östman, Carina Strell, Roy M. Bremnes, Lill-Tove Busund, Tom Dønnem, Iñigo Martínez-Zubiaurre
Software Mentions: 9
Published: almost 7 years ago
10.7717/peerj.4473
pcr: an R package for quality assessment, analysis and testing of qPCR data
Cited by: 72
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Software Mentions: 9
Published: over 6 years ago
10.3389/fmicb.2021.641643
Temporal Bacterial Community Diversity in the Nicotiana tabacum Rhizosphere Over Years of Continuous Monocropping
Cited by: 10
Author(s): Yan Ling, Wenyou Zhang, Wangjun Duan, Yizheng Zhang, Wen Zheng, Xianjun Lai
Software Mentions: 9
Published: over 3 years ago
10.1080/0886022X.2021.1937220
Dynamics in perioperative neutrophil-to-lymphocyte*platelet ratio as a predictor of early acute kidney injury following cardiovascular surgery
Cited by: 11
Author(s): Yang Li, Zhouping Zou, Yunlu Zhang, Bowen Zhu, Yuping Ning, Bo Shen, Chunsheng Wang, Zhe Luo, Jiacheng Xu, Xiaoqiang Ding
Software Mentions: 9
Published: almost 4 years ago
10.3389/fgene.2020.00192
Integrated Analysis Identifies a Nine-microRNA Signature Biomarker for Diagnosis and Prognosis in Colorectal Cancer
Cited by: 31
Author(s): Ziyang Di, Maojun Di, Weihua Fu, Qiang Tang, Yanwei Liu, Peijie Lei, Xinsheng Gu, Tong Liu, Min Sun
Software Mentions: 9
Published: over 4 years ago
10.1038/s41598-020-76315-8
Robustly forecasting maize yields in Tanzania based on climatic predictors
Cited by: 18
Author(s): Rahel Laudien, Bernhard Schauberger, David Makowski, Christoph Gornott
Software Mentions: 9
Published: about 4 years ago
10.1186/s12889-020-09748-5
Co-occurrence across time and space of drug- and cannabinoid- exposure and adverse mental health outcomes in the National Survey of Drug Use and Health: combined geotemporospatial and causal inference analysis
Cited by: 18
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 9
Published: about 4 years ago
10.3389/fgene.2021.661988
Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma
Cited by: 12
Author(s): Xingte Chen, Lei Wang, Liang Hong, Zhiying Su, Xiaohong Zhong, Han Zhou, Xueqing Zhang, Junxin Wang, Lingdong Shao
Software Mentions: 9
Published: over 3 years ago
10.1186/s12918-016-0349-1
DGCA: A comprehensive R package for Differential Gene Correlation Analysis
Cited by: 156
Author(s): Andrew McKenzie, Igor Katsyv, Won Min Song, Minghui Wang, Bin Zhang
Software Mentions: 9
Published: about 8 years ago
10.1371/journal.pntd.0006159
Barriers of attendance to dog rabies static point vaccination clinics in Blantyre, Malawi
Cited by: 30
Author(s): Stella Mazeri, Andrew D Gibson, Natascha Meunier, Barend M. deC. Bronsvoort, Ian Handel, Richard J. Mellanby, Luke Gamble
Software Mentions: 9
Published: almost 7 years ago
10.1111/1462-2920.14870
Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys
Cited by: 23
Author(s): Laura Weber, Patricia González‐Díaz, Maickel Armenteros, Víctor Manuel Ferrer, Fernando Bretos, Erich Bartels, Alyson E. Santoro, Amy Apprill
Software Mentions: 9
Published: almost 5 years ago
10.3390/microorganisms8050623
Framework as a Service, FaaS: Personalized Prebiotic Development for Infants with the Elements of Time and Parametric Modelling of In Vitro Fermentation
Cited by: 0
Author(s): Kwok Wai Lam, Wai‐Yin Cheng, Fan Yang, Shaoling Lin, Lijun You, Jiachi Chiou, Hoi Shan Kwan, Peter Chi Keung Cheung
Software Mentions: 9
Published: over 4 years ago
10.1038/s41598-021-92629-7
A cohort study to investigate sex-specific differences in ANCA-associated glomerulonephritis outcomes
Cited by: 8
Author(s): Jennifer Scott, Carolina Canepa, Antonia Buettner, Louise Ryan, Bróna Moloney, Sarah Cormican, Cathal Walsh, Arthur White, Alan D. Salama, Mark A. Little
Software Mentions: 9
Published: over 3 years ago
10.1172/jci.insight.138729
CD28 costimulation drives tumor-infiltrating T cell glycolysis to promote inflammation
Cited by: 45
Author(s): Kathryn E. Beckermann, Rachel Hongo, Xiang Ye, Kirsten Young, Katie Carbonell, Diana C Contreras Healey, Peter J. Siska, Sierra Barone, Caroline E. Roe, Christof C. Smith, Benjamin G. Vincent, Frank M. Mason, Jonathan M. Irish, W. Kimryn Rathmell, Jeffrey C. Rathmell
Software Mentions: 9
Published: over 4 years ago
10.1155/2021/7408893
Identification of a Four-lncRNA Prognostic Signature for Colon Cancer Based on Genome Instability
Cited by: 2
Author(s): Duo Yun, Zhimin Yang
Software Mentions: 9
Published: about 3 years ago
10.2196/27163
Variation of Daily Care Demand in Swiss General Hospitals: Longitudinal Study on Capacity Utilization, Patient Turnover and Clinical Complexity Levels
Cited by: 5
Author(s): Narayan Sharma, René Schwendimann, Olga Endrich, Dietmar Ausserhofer, Michaël Simon
Software Mentions: 9
Published: over 3 years ago
10.1155/2021/6657397
Identifying Stage II Colorectal Cancer Recurrence Associated Genes by Microarray Meta-Analysis and Building Predictive Models with Machine Learning Algorithms
Cited by: 2
Author(s): Wei Lu, Xiang Pan, Siqi Dai, Dongliang Fu, Maxwell Hwang, Yaowu Zhu, Lina Zhang, Jingsun Wei, Xianglong Kong, Jun Li, Qian Xiao, Kefeng Ding
Software Mentions: 9
Published: almost 4 years ago
10.1038/s41598-019-50565-7
Tradeoffs in hyphal traits determine mycelium architecture in saprobic fungi
Cited by: 14
Author(s): Anika Lehmann, Weiguo Zheng, Katharina Soutschek, Julien Roy, Andrey Yurkov, Matthias C. Rillig
Software Mentions: 9
Published: about 5 years ago
10.3390/insects12070577
Transcriptome Analyses Provide Insights into the Aggressive Behavior toward Conspecific and Heterospecific in Thitarodes xiaojinensis (Lepidoptera: Hepialidae)
Cited by: 1
Author(s): Zhongchen Rao, Li Cao, Hua Wu, Richou Han
Software Mentions: 9
Published: over 3 years ago