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Papers: 10.1038/s41598-021-92648-4

https://doi.org/10.1038/s41598-021-92648-4

Transmitting silks of maize have a complex and dynamic microbiome

Cited by: 5
Author(s): Eman M. Khalaf, Anuja Shrestha, Jeffrey Rinne, Michael D. J. Lynch, Charles Shearer, Victor Limay-Rios, L. M. Reid, Manish N. Raizada
Published: over 5 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: metacoder
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
Papers that mentioned: 32
Very Likely Science (100)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
Very Likely Science (85)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
Very Likely Science (83)
pypi: qiime
Quantitative Insights Into Microbial Ecology
Papers that mentioned: 157
Very Likely Science (90)
pypi: STAMP
A graphical software package for analyzing taxonomic and functional profiles.
Papers that mentioned: 1,190
Very Likely Science (65)