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Papers: 10.1186/s12864-018-4870-z

https://doi.org/10.1186/s12864-018-4870-z

WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data

Cited by: 11
Author(s): Joseph C. Devlin, Thomas Battaglia, Martin J. Blaser, Kelly V. Ruggles
Published: about 7 years ago

Software Mentions 9

bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
Papers that mentioned: 136
Very Likely Science (100)
bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
Very Likely Science (75)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: MetaComp
EDGE Taxonomy Assignments Visualization
Papers that mentioned: 2
Very Likely Science (100)
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
Very Likely Science (100)
cran: psych
Procedures for Psychological, Psychometric, and Personality Research
Papers that mentioned: 1,085
Very Likely Science (100)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
Very Likely Science (100)
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163
Very Likely Science (90)