Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.celrep.2021.109698

https://doi.org/10.1016/j.celrep.2021.109698

Transitions in lineage specification and gene regulatory networks in hematopoietic stem/progenitor cells over human development

Cited by: 33
Author(s): Anindita Roy, Guanlin Wang, Deena Iskander, Sorcha O’Byrne, Natalina E. Elliott, Jennifer O’Sullivan, Gemma Buck, Elisabeth F. Heuston, Wei Wen, Alba Rodríguez-Meira, Peng Hua, Anastasios Karadimitris, Adam J. Mead, David M. Bodine, Irene Roberts, Bethan Psaila, Supat Thongjuea
Published: about 3 years ago

Software Mentions 9

bioconductor: AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Papers that mentioned: 45
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: RcppAnnoy
'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors
Papers that mentioned: 1
pypi: arboreto
Scalable gene regulatory network inference using tree-based ensemble regressors
Papers that mentioned: 2
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: pyscenic
Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments.
Papers that mentioned: 2