Packages with Software Mentions in Scientific Papers

pypi: Wallace

An API for modeling data with psycopg2, redis-py, and pymongo.
Papers that mentioned: 6

Very Likely Science (75)

pypi: spot

DotCloud environment loader
Papers that mentioned: 6

Very Likely Science (65)

pypi: purge

Delete temp file as per patthen
Papers that mentioned: 6

Very Likely Science (65)

pypi: PyYAML

YAML parser and emitter for Python
Papers that mentioned: 6

Very Likely Science (100)

pypi: splatter

Vizualizing multidimensional points in a pleasing and informative way
Papers that mentioned: 6

Very Likely Science (65)

pypi: pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
Papers that mentioned: 6

Very Likely Science (100)

pypi: spectral

Spectral Python (SPy) is a Python module for hyperspectral image processing.
Papers that mentioned: 6

Very Likely Science (80)

pypi: WhiteStripe

A wrapper for the WhiteStripe normalization R package
Papers that mentioned: 6

Very Likely Science (65)

pypi: pyswarm

Particle swarm optimization (PSO) with constraint support
Papers that mentioned: 6

Very Likely Science (90)

pypi: Pythonic

Graphical automation tool
Papers that mentioned: 6

Very Likely Science (65)

pypi: VCF-kit

Assorted utilities for the variant call format
Papers that mentioned: 6

Very Likely Science (100)

pypi: webpack

Python bindings to Webpack
Papers that mentioned: 6

Very Likely Science (65)

pypi: Tour

Papers that mentioned: 6

Very Likely Science (65)

pypi: visualize

useful visualization function
Papers that mentioned: 6

Very Likely Science (95)

pypi: xyplot

Plotting with python made easy
Papers that mentioned: 6

Very Likely Science (75)

pypi: wallet

OpenAPI compliant library to access resources on the Wallet Inc. Platform
Papers that mentioned: 6

Likely Science (40)

pypi: spyder

The Scientific Python Development Environment
Papers that mentioned: 6

Very Likely Science (90)

pypi: walkway

Motion detector for a narrow runway
Papers that mentioned: 6

Very Likely Science (95)

pypi: up

Up - A next generation status monitor
Papers that mentioned: 6

Very Likely Science (65)

pypi: spreadsheet

A tool to manipulate Google Spreadsheets
Papers that mentioned: 6

Very Likely Science (65)

pypi: pyserial

Python Serial Port Extension
Papers that mentioned: 6

Very Likely Science (65)

bioconductor: GOfuncR

Gene ontology enrichment using FUNC
Papers that mentioned: 6

Very Likely Science (100)

cran: IBDsim

Simulation of Chromosomal Regions Shared by Family Members
Papers that mentioned: 6

Very Likely Science (60)

pypi: randtest

Quick and accurate determinations of the randomness of a sequence
Papers that mentioned: 6

Very Likely Science (100)

cran: abcrf

Approximate Bayesian Computation via Random Forests
Papers that mentioned: 6

Very Likely Science (85)

cran: mgcViz

Visualisations for Generalized Additive Models
Papers that mentioned: 6

Very Likely Science (100)

cran: MAc

Papers that mentioned: 6

Unlikely Science (0)

cran: growthrates

Estimate Growth Rates from Experimental Data
Papers that mentioned: 6

Very Likely Science (100)

cran: cat

Analysis and Imputation of Categorical-Variable Datasets with Missing Values
Papers that mentioned: 6

Very Likely Science (85)

pypi: HSL

HSL conversion tools
Papers that mentioned: 6

Very Likely Science (65)

pypi: fastjet

Official FastJet bindings to Python and Awkward Array.
Papers that mentioned: 6

Very Likely Science (100)

bioconductor: tspair

Papers that mentioned: 6

Unlikely Science (0)

bioconductor: InteractionSet

Base Classes for Storing Genomic Interaction Data
Papers that mentioned: 6

Very Likely Science (75)

pypi: ade

Asynchronous Differential Evolution, with efficient multiprocessing.
Papers that mentioned: 6

Very Likely Science (65)

cran: socialmixr

Social Mixing Matrices for Infectious Disease Modelling
Papers that mentioned: 6

Very Likely Science (100)

pypi: animation

Decorators for terminal-based wait animations.
Papers that mentioned: 6

Very Likely Science (65)

bioconductor: DMRforPairs

DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
Papers that mentioned: 6

Very Likely Science (100)

cran: alakazam

Immunoglobulin Clonal Lineage and Diversity Analysis
Papers that mentioned: 6

Very Likely Science (93)

bioconductor: ITALICS

ITALICS
Papers that mentioned: 6

Very Likely Science (90)

cran: AutoPipe

Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis
Papers that mentioned: 6

Very Likely Science (85)

cran: harmony

Fast, Sensitive, and Accurate Integration of Single Cell Data
Papers that mentioned: 6

Very Likely Science (75)

cran: allelematch

Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present
Papers that mentioned: 6

Very Likely Science (75)

cran: cap

Covariate Assisted Principal (CAP) Regression for Covariance Matrix Outcomes
Papers that mentioned: 6

Very Likely Science (85)

cran: hyperSMURF

Hyper-Ensemble Smote Undersampled Random Forests
Papers that mentioned: 6

Very Likely Science (75)

cran: gss

General Smoothing Splines
Papers that mentioned: 6

Very Likely Science (83)

cran: REPTILE

Regulatory DNA Element Prediction
Papers that mentioned: 6

Very Likely Science (75)

pypi: whole

Papers that mentioned: 6

Very Likely Science (65)

bioconductor: DMRcaller

Differentially Methylated Regions caller
Papers that mentioned: 6

Very Likely Science (100)

cran: EWS

Early Warning System
Papers that mentioned: 6

Very Likely Science (75)

bioconductor: BCRANK

Predicting binding site consensus from ranked DNA sequences
Papers that mentioned: 6

Very Likely Science (75)

cran: MOSS

Multi-Omic Integration via Sparse Singular Value Decomposition
Papers that mentioned: 6

Very Likely Science (81)

cran: BRL

Beta Record Linkage
Papers that mentioned: 6

Very Likely Science (100)

cran: bedr

Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'
Papers that mentioned: 6

Very Likely Science (83)

bioconductor: AffyRNADegradation

Analyze and correct probe positional bias in microarray data due to RNA degradation
Papers that mentioned: 6

Very Likely Science (100)

cran: evtree

Evolutionary Learning of Globally Optimal Trees
Papers that mentioned: 6

Very Likely Science (85)

cran: mosaic

Project MOSAIC Statistics and Mathematics Teaching Utilities
Papers that mentioned: 6

Very Likely Science (100)

cran: jmuOutlier

Permutation Tests for Nonparametric Statistics
Papers that mentioned: 6

Very Likely Science (93)

bioconductor: flowMerge

Cluster Merging for Flow Cytometry Data
Papers that mentioned: 6

Very Likely Science (75)

cran: modelr

Modelling Functions that Work with the Pipe
Papers that mentioned: 6

Very Likely Science (93)

cran: HUM

Compute HUM Value and Visualize ROC Curves
Papers that mentioned: 6

Very Likely Science (75)

cran: AssotesteR

Statistical Tests for Genetic Association Studies
Papers that mentioned: 6

Very Likely Science (85)

pypi: physics

An Educational project about Physics
Papers that mentioned: 6

Very Likely Science (90)

bioconductor: fabia

FABIA: Factor Analysis for Bicluster Acquisition
Papers that mentioned: 6

Very Likely Science (100)

pypi: qplot

Visualization of SciGRID_gas networks structures
Papers that mentioned: 6

Very Likely Science (75)

pypi: Aduro

Progress tracker for Amazon Kindle
Papers that mentioned: 6

Very Likely Science (65)

pypi: amber

A library that makes using REST API easer.
Papers that mentioned: 6

Very Likely Science (90)

cran: HAC

Estimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC)
Papers that mentioned: 6

Very Likely Science (85)

bioconductor: FCBF

Fast Correlation Based Filter for Feature Selection
Papers that mentioned: 6

Very Likely Science (100)

bioconductor: flowTrans

Parameter Optimization for Flow Cytometry Data Transformation
Papers that mentioned: 6

Very Likely Science (85)

pypi: bokeh

Interactive plots and applications in the browser from Python
Papers that mentioned: 6

Very Likely Science (90)

pypi: minepy

minepy - Maximal Information-based Nonparametric Exploration
Papers that mentioned: 6

Very Likely Science (80)

pypi: jar

Papers that mentioned: 6

Unlikely Science (0)

bioconductor: IsoCorrectoR

Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments
Papers that mentioned: 6

Very Likely Science (85)

cran: hts

Hierarchical and Grouped Time Series
Papers that mentioned: 6

Very Likely Science (75)

cran: REddyProc

Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Papers that mentioned: 6

Very Likely Science (95)

pypi: Rare

A gui for Legendary
Papers that mentioned: 6

Likely Science (40)

pypi: FEW

Feature Engineering Wrapper
Papers that mentioned: 6

Very Likely Science (100)

cran: regtools

Regression and Classification Tools
Papers that mentioned: 6

Very Likely Science (100)

bioconductor: coseq

Co-Expression Analysis of Sequencing Data
Papers that mentioned: 6

Very Likely Science (100)

cran: momentuHMM

Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models
Papers that mentioned: 6

Very Likely Science (100)

pypi: elasticsearch

Python client for Elasticsearch
Papers that mentioned: 6

Very Likely Science (100)

cran: medmod

Papers that mentioned: 6

Unlikely Science (0)

pypi: mbs

Utilities for MB Scientific analyzer data
Papers that mentioned: 6

Very Likely Science (75)

bioconductor: ccrepe

ccrepe_and_nc.score
Papers that mentioned: 6

Very Likely Science (90)

cran: hrbrthemes

Additional Themes, Theme Components and Utilities for 'ggplot2'
Papers that mentioned: 6

Very Likely Science (66)

cran: REGENT

Risk Estimation for Genetic and Environmental Traits
Papers that mentioned: 6

Very Likely Science (85)

cran: inference

Papers that mentioned: 6

Unlikely Science (0)

cran: MODISTools

Interface to the 'MODIS Land Products Subsets' Web Services
Papers that mentioned: 6

Very Likely Science (100)

cran: crawl

Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data
Papers that mentioned: 6

Very Likely Science (75)

cran: densityClust

Clustering by Fast Search and Find of Density Peaks
Papers that mentioned: 6

Very Likely Science (100)

pypi: file

CFFI bindings for libmagic.
Papers that mentioned: 6

Very Likely Science (65)

cran: hapassoc

Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm
Papers that mentioned: 6

Very Likely Science (85)

pypi: flextable

tabular data formatter, for code, cli or pipes
Papers that mentioned: 6

Very Likely Science (65)

pypi: fitbit

Fitbit API Wrapper.
Papers that mentioned: 6

Very Likely Science (100)

bioconductor: miRNAmeConverter

Convert miRNA Names to Different miRBase Versions
Papers that mentioned: 6

Very Likely Science (75)

cran: CKAT

Composite Kernel Association Test for Pharmacogenetics Studies
Papers that mentioned: 6

Very Likely Science (93)

bioconductor: GSEAlm

Linear Model Toolset for Gene Set Enrichment Analysis
Papers that mentioned: 6

Very Likely Science (100)

pypi: arrow

Better dates & times for Python
Papers that mentioned: 6

Very Likely Science (100)

cran: clusterGenomics

Identifying clusters in genomics data by recursive partitioning
Papers that mentioned: 6

Very Likely Science (85)

cran: BMT

The BMT Distribution
Papers that mentioned: 6

Very Likely Science (75)