Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: REPTILE

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/REPTILE

Regulatory DNA Element Prediction
1 version
Latest release: about 8 years ago
93 downloads last month

Papers Mentioning REPTILE 6

CRUP: a comprehensive framework to predict condition-specific regulatory units
Cited by: 26
Author(s): Anna Ramisch, Verena Heinrich, Laura V. Glaser, Alisa Fuchs, Xinyi Yang, Philipp Benner, Robert Schöpflin, Na Li, Sarah Kinkley, Anja Römer-Hillmann, John Longinotto, Steffen Heyne, Beate Czepukojc, Sonja M. Kessler, Alexandra K. Kiemer, Cristina Cadenas, Laura Arrigoni, Nina Gasparoni, Thomas Manke, Thomas Pap, J. Andrew Pospisilik, Jan G. Hengstler, Jörn Walter, Sebastiaan H. Meijsing, Ho‐Ryun Chung, Martin Vingron
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12859-019-2708-6

Predicting enhancers in mammalian genomes using supervised hidden Markov models
Cited by: 11
Author(s): Tobias Zehnder, Philipp Benner, Martin Vingron
Software Mentions: 3
Published: over 5 years ago

10.3389/fncel.2019.00352

Beyond the Exome: The Non-coding Genome and Enhancers in Neurodevelopmental Disorders and Malformations of Cortical Development
Cited by: 48
Author(s): Elena Perenthaler, Soheil Yousefi, Eva Niggl, Tahsin Stefan Barakat
Software Mentions: 3
Published: about 5 years ago

10.1186/1471-2164-11-99

Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics
Cited by: 69
Author(s): Christophe Noël, Nicia Diaz, Thomas Sicheritz-Pontén, Lucie Šafaříková, Jan Tachezy, Petrus Tang, Pier Luigi Fiori, Robert P. Hirt
Software Mentions: 2
Published: over 14 years ago

10.7554/eLife.34803

Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon
Cited by: 58
Author(s): Anna I. Vickrey, Rebecca Bruders, Zev Kronenberg, Emma J Mackey, Ryan J. Bohlender, Emily Maclary, Raquel Maynez, Edward J. Osborne, Kevin P. Johnson, Chad Huff, Mark Yandell, Michael D. Shapiro
Software Mentions: 2
Published: about 6 years ago

10.3389/fnbeh.2018.00318

Improving Memory Inhibition: A Study of Retrieval Induced Forgetting, Executive Control, and Chronic Aerobic Exercise
Cited by: 2
Author(s): Concepción Padilla, Pilar Andrés, M. Teresa Bajo
Software Mentions: 1
Published: over 5 years ago