Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1860-7

https://doi.org/10.1186/s13059-019-1860-7

CRUP: a comprehensive framework to predict condition-specific regulatory units

Cited by: 26
Author(s): Anna Ramisch, Verena Heinrich, Laura V. Glaser, Alisa Fuchs, Xinyi Yang, Philipp Benner, Robert Schöpflin, Na Li, Sarah Kinkley, Anja Römer-Hillmann, John Longinotto, Steffen Heyne, Beate Czepukojc, Sonja M. Kessler, Alexandra K. Kiemer, Cristina Cadenas, Laura Arrigoni, Nina Gasparoni, Thomas Manke, Thomas Pap, J. Andrew Pospisilik, Jan G. Hengstler, Jörn Walter, Sebastiaan H. Meijsing, Ho‐Ryun Chung, Martin Vingron
Published: about 5 years ago

Software Mentions 5

cran: REPTILE
Regulatory DNA Element Prediction
Papers that mentioned: 6
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Papers that mentioned: 31
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203