Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: pyprophet
https://packages.ecosyste.ms/registries/pypi.org/packages/pyprophet
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
74 versions
Latest release: over 1 year ago
2 dependent packages
314 downloads last month
Papers Mentioning pyprophet 6
10.1186/s13059-020-02188-9
Convergent network effects along the axis of gene expression during prostate cancer progressionCited by: 14
Author(s): Konstantina Charmpi, Tiannan Guo, Qing Zhong, Ulrich Wagner, Rui Sun, Nora C. Toussaint, Christine Fritz, Chunhui Yuan, Hao Chen, Niels J. Rupp, Ailsa J. Christiansen, Dorothea Rutishauser, Jan H. Rüschoff, Christian Daniel Fankhauser, Karim Saba, Cédric Poyet, Thomas Hermanns, Kathrin Oehl, Ariane L. Moore, Christian Beisel, Laurence Calzone, Loredana Martignetti, Qiushi Zhang, Yi Zhu, María Rodríguez Martínez, Matteo Manica, Michael C. Haffner, Ruedi Aebersold, Peter J. Wild, Andreas Beyer
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12014-021-09323-z
Robust optimization of SWATH-MS workflow for human blood serum proteome analysis using a quality by design approachCited by: 2
Author(s): Edith Serrano-Blesa, Andrew C.G. Porter, Dennis Lendrem, Costantino Pitzalis, Anne Barton, Achim Treumann, John D. Isaacs
Software Mentions: 3
Published: about 3 years ago
10.7554/eLife.07661
An open-source computational and data resource to analyze digital maps of immunopeptidomesCited by: 92
Author(s): Étienne Caron, Lucia Espona Pernas, Daniel J. Kowalewski, Heiko Schuster, Nicola Ternette, Adán Alpízar, Ralf B. Schittenhelm, Sri H. Ramarathinam, Cecilia S. Lindestam Arlehamn, Ching Chiek Koh, Ludovic Gillet, Armin Rabsteyn, Pedro J. Navarro, Sangtae Kim, Henry H N Lam, Theo Sturm, Miguel Marcilla, Alessandro Sette, D. S. Campbell, Eric W. Deutsch, Robert L. Moritz, Anthony W. Purcell, Hans‐Georg Rammensee, Stefan Stevanović, Ruedi Aebersold
Software Mentions: 3
Published: over 9 years ago
10.1016/j.gpb.2019.11.008
DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker DiscoveryCited by: 48
Author(s): Tiansheng Zhu, Yi Zhu, Yue Xuan, Huanhuan Gao, Xue Cai, Sander R. Piersma, Thang V. Pham, Tim Schelfhorst, Richard R Goeij De Haas, Irene V. Bijnsdorp, Rui Sun, Yue Liang, Guan Ruan, Qiushi Zhang, Mo Hu, Yue Zhou, Winan J. van Houdt, Tessa Y.S. Le Large, Jacqueline Cloos, Anna Wojtuszkiewicz, Danijela Koppers-Lalić, Franziska Böttger, Chantal Scheepbouwer, Ruud H. Brakenhoff, Geert J.L.H. van Leenders, Jan N.M. IJzermans, John W.M. Martens, Renske D.M. Steenbergen, Nicole C.T. van Grieken, Sathiyamoorthy Selvarajan, Sangeeta Mantoo, Sze S. Lee, Serene Yeow, Syed Muhammad Fahmy Alkaff, Nan Xiang, Yaoting Sun, Xiao Yi, Sheng Dai, Wei Liu, Li Tian, Zhicheng Wu, Xiao Liang, Man Wang, Yingkuan Shao, Xi Zheng, Kailun Xu, Qin Yang, Yifan Meng, Cong Lu, Jiang Zhu, Jianming Zheng, Bo Wang, Sai Lou, Yibei Dai, Chao Xu, Chunjing Yu, Hua‐Zhong Ying, Tony Kiat-Hon Lim, Jianmin Wu, Xiaofei Gao, Zhongzhi Luan, Xiaodong Teng, Peng Wu, Shiang Huang, Zhihua Tao, N. Gopalakrishna Iyer, Shuigeng Zhou, Wenguang Shao, Henry H N Lam, Ding Ma, Jiafu Ji, Oi Lian Kon, Shu Zheng, Ruedi Aebersold, Connie R. Jiménez, Tiannan Guo
Software Mentions: 2
Published: over 4 years ago
10.1038/sdata.2014.31
A repository of assays to quantify 10,000 human proteins by SWATH-MSCited by: 373
Author(s): George Rosenberger, Ching Chiek Koh, Tiannan Guo, Hannes L. Röst, Petri Kouvonen, Ben C. Collins, Moritz Heusel, Yansheng Liu, Étienne Caron, Anton Vichalkovski, Marco Faini, Olga T. Schubert, Pouya Faridi, H. Alexander Ebhardt, Mariette Matondo, Henry Lam, Samuel L. Bader, D. S. Campbell, Eric W. Deutsch, Robert L. Moritz, Stephen Tate, Ruedi Aebersold
Software Mentions: 2
Published: about 10 years ago
10.1016/j.mcpro.2021.100113
Proteome Profiling of Recombinant DNase Therapy in Reducing NETs and Aiding Recovery in COVID-19 PatientsCited by: 46
Author(s): Jane Fisher, Tirthankar Mohanty, Christofer Karlsson, Seyed Mohammad Hossein Khademi, Erik Malmström, Attila Frigyesi, Pontus Nordenfelt, Johan Malmström, Adam Linder
Software Mentions: 1
Published: almost 4 years ago