Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-020-02188-9
https://doi.org/10.1186/s13059-020-02188-9
Convergent network effects along the axis of gene expression during prostate cancer progression
Cited by: 14
Author(s): Konstantina Charmpi, Tiannan Guo, Qing Zhong, Ulrich Wagner, Rui Sun, Nora C. Toussaint, Christine Fritz, Chunhui Yuan, Hao Chen, Niels J. Rupp, Ailsa J. Christiansen, Dorothea Rutishauser, Jan H. Rüschoff, Christian Daniel Fankhauser, Karim Saba, Cédric Poyet, Thomas Hermanns, Kathrin Oehl, Ariane L. Moore, Christian Beisel, Laurence Calzone, Loredana Martignetti, Qiushi Zhang, Yi Zhu, María Rodríguez Martínez, Matteo Manica, Michael C. Haffner, Ruedi Aebersold, Peter J. Wild, Andreas Beyer
Published: about 4 years ago
Software Mentions 5
bioconductor: CopywriteR
Copy number information from targeted sequencing using off-target readsPapers that mentioned: 28
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: SWATH2stats
Transform and Filter SWATH Data for Statistical PackagesPapers that mentioned: 9
pypi: pyprophet
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.Papers that mentioned: 6