Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: SWATH2stats

https://packages.ecosyste.ms/registries/bioconductor.org/packages/SWATH2stats

Transform and Filter SWATH Data for Statistical Packages
1 version
Latest release: 10 months ago
12,573 downloads total

Papers Mentioning SWATH2stats 9

10.1038/s41598-019-43091-z

A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model
Cited by: 10
Author(s): Tatjana Sajic, Rodolfo Ciuffa, Vera Lemos, Pan Xu, Valentina Leone, Chen Li, Evan G. Williams, Georgios Makris, Amir Banaei‐Esfahani, Mathias Heikenwälder, Kristina Schoonjans, Ruedi Aebersold
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-020-02188-9

Convergent network effects along the axis of gene expression during prostate cancer progression
Cited by: 14
Author(s): Konstantina Charmpi, Tiannan Guo, Qing Zhong, Ulrich Wagner, Rui Sun, Nora C. Toussaint, Christine Fritz, Chunhui Yuan, Hao Chen, Niels J. Rupp, Ailsa J. Christiansen, Dorothea Rutishauser, Jan H. Rüschoff, Christian Daniel Fankhauser, Karim Saba, Cédric Poyet, Thomas Hermanns, Kathrin Oehl, Ariane L. Moore, Christian Beisel, Laurence Calzone, Loredana Martignetti, Qiushi Zhang, Yi Zhu, María Rodríguez Martínez, Matteo Manica, Michael C. Haffner, Ruedi Aebersold, Peter J. Wild, Andreas Beyer
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0153160

SWATH2stats: An R/Bioconductor Package to Process and Convert Quantitative SWATH-MS Proteomics Data for Downstream Analysis Tools
Cited by: 39
Author(s): Peter Blattmann, Moritz Heusel, Ruedi Aebersold
Software Mentions: 5
Published: over 8 years ago

10.1016/j.cels.2017.11.002

Systems Pharmacology Dissection of Cholesterol Regulation Reveals Determinants of Large Pharmacodynamic Variability between Cell Lines
Cited by: 18
Author(s): Peter Blattmann, David Henriques, Michael Zimmermann, Fabian Frommelt, Uwe Sauer, Julio Sáez-Rodríguez, Ruedi Aebersold
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0249771

OptiMissP: A dashboard to assess missingness in proteomic data-independent acquisition mass spectrometry
Cited by: 6
Author(s): Angelica Arioli, Arianna Dagliati, Bethany Geary, Niels Peek, Philip A. Kalra, Anthony D. Whetton, Nophar Geifman
Software Mentions: 4
Published: over 3 years ago

10.1038/sdata.2019.11

Generation of a zebrafish SWATH-MS spectral library to quantify 10,000 proteins
Cited by: 38
Author(s): Peter Blattmann, Vivienne Stutz, Giulia Lizzo, J. Wall Richard, Philipp Gut, Ruedi Aebersold
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-32314-4

Separation of blood microsamples by exploiting sedimentation at the microscale
Cited by: 22
Author(s): David Forchelet, Steve Béguin, Tatjana Sajic, Nasim Bararpour, Zoltan Pataky, Miguel Frias, Silke Grabherr, Marc Augsburger, Y. Liu, Mirren Charnley, Julien Déglon, Ruedi Aebersold, Aurélien Thomas, Philippe Renaud
Software Mentions: 3
Published: almost 6 years ago

10.15252/msb.20188438

Complex‐centric proteome profiling by <scp>SEC</scp> ‐ <scp>SWATH</scp> ‐ <scp>MS</scp>
Cited by: 99
Author(s): Moritz Heusel, Isabell Bludau, George Rosenberger, Robin Hafen, M Frank, Amir Banaei‐Esfahani, Audrey van Drogen, Ben C. Collins, Matthias Gstaiger, Ruedi Aebersold
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13102443

Discovery and Evaluation of Protein Biomarkers as a Signature of Wellness in Late-Stage Cancer Patients in Early Phase Clinical Trials
Cited by: 4
Author(s): Bethany Geary, Erin Peat, S. Dransfield, Natalie Cook, Fiona Thistlethwaite, Donna M. Graham, Louise Carter, Andrew Hughes, Matthew Krebs, Anthony D. Whetton
Software Mentions: 2
Published: about 3 years ago