Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DMRcaller

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DMRcaller

Differentially Methylated Regions caller
1 version
Latest release: about 1 year ago
16,293 downloads total

Papers Mentioning DMRcaller 6

10.1186/s12870-020-02814-5

Integrated analysis of DNA methylome and transcriptome reveals epigenetic regulation of CAM photosynthesis in pineapple
Cited by: 8
Author(s): Yan Shi, Xingtan Zhang, Xiaojun Chang, Mei Yan, Hui Zhao, Yuan Qin, Haifeng Wang
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12864-020-06886-3

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data
Cited by: 8
Author(s): Yadollah Shahryary, Rashmi R. Hazarika, Frank Johannes
Software Mentions: 4
Published: over 4 years ago

10.3389/fpls.2018.00497

Massive Loss of DNA Methylation in Nitrogen-, but Not in Phosphorus-Deficient Zea mays Roots Is Poorly Correlated With Gene Expression Differences
Cited by: 28
Author(s): Svenja Mager, Uwe Ludewig
Software Mentions: 3
Published: over 6 years ago

10.1186/s12870-018-1603-z

The transcriptome of zinc deficient maize roots and its relationship to DNA methylation loss
Cited by: 24
Author(s): Svenja Mager, Brigitte Schönberger, Uwe Ludewig
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0168623

Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa
Cited by: 23
Author(s): Brigitte Schönberger, Xianfeng Chen, Svenja Mager, Uwe Ludewig
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms21155387

Predicting Carcinogenic Mechanisms of Non-Genotoxic Carcinogens via Combined Analysis of Global DNA Methylation and In Vitro Cell Transformation
Cited by: 7
Author(s): Sung Hee Hwang, Hojin Yeom, Byeal I. Han, Byung Joo Ham, Yong Moon Lee, Mi Ryung Han, Michael Lee
Software Mentions: 2
Published: over 4 years ago