Projects: pypi: scikit-learn
https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn
A set of python modules for machine learning and data mining
72 versions
Latest release: almost 3 years ago
5,918 dependent packages
43,777,417 downloads last month
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a.joly@ulg.ac.be
vanderplas@astro.washington.edu
bh00038@cvplws63.eps.surrey.ac.uk
ha258@cornell.edu
satra@mit.edu
zl2480@columbia.edu
pinto@alum.mit.edu
jz4721@nyu.edu
matteo.visconti.gr@dartmouth.edu
vighneshbirodkar@nyu.edu
robert.l.marchman@dartmouth.edu
rs2715@stern.nyu.edu
claire.savard@colorado.edu
aaaagrawal@iitb.ac.in
ihaque@cs.stanford.edu
rspeer@mit.edu
mluessi@nmr.mgh.harvard.edu
amitibo@tx.technion.ac.il
ericchang2017@u.northwestern.edu
jkarno@seas.upenn.edu
minghui.liu@trincoll.edu
m.lyra@sussex.ac.uk
andrew.knyazev@ucdenver.edu
lamb@cs.stanford.edu
camilo@neurostat.mit.edu
martino.sorbaro@ed.ac.uk
t.sheerman-chase@surrey.ac.uk
cgohlke@uci.edu
batulaa@drexel.edu
kcarnold@alum.mit.edu
apw@seas.harvard.edu
abie@alum.mit.edu
rossbar@berkeley.edu
alceballosa@unal.edu.co
fhoang7@berkeley.edu
hechen@seas.upenn.edu
stefan@sun.ac.za
deepyaman.datta@utexas.edu
rebekah.kim@columbia.edu
shubham.bhardwaj2015@vit.ac.in
slama@berkeley.edu
nisingh@wharton.upenn.edu
kanikas3@vt.edu
jdlabal@stanford.edu
kjells@uw.edu
markus.loning.17@ucl.ac.uk
k_nzw@klis.tsukuba.ac.jp
dkirkby@uci.edu
balawson@bu.edu
c.brummitt@columbia.edu
choo8@illinois.edu
giorgio.patrini@anu.edu.au
shangwuy@andrew.cmu.edu
rafael.possas@sydney.edu.au
olsonran@msu.edu
brian.mcfee@nyu.edu
naj273@nyu.edu
dgrusak@trinity.edu
emd222@cornell.edu
voth0@sewanee.edu
trishnendu.dd2014@cs.iiests.ac.in
apeng@berkeley.edu
boucher@cs.umass.edu
lunt@ctbp.ucsd.edu
bakhbari@mgh.harvard.edu
piraka@brandeis.edu
neal.lathia@cl.cam.ac.uk
razhoshia@post.bgu.ac.il
michal.romaniuk06@ic.ac.uk
m.batchkarov@sussex.ac.uk
lemin@cs.colostate.edu
rudvlf0413@korea.ac.kr
vredev16@msu.edu
raschkas@msu.edu
ali.baharev@univie.ac.at
a.krasoulis@sms.ed.ac.uk
arokem@berkeley.edu
gabrielvr@al.insper.edu.br
eric.sanchez1234@email.bakersfieldcollege.edu
fcchou@stanford.edu
rofuyu@cs.utexas.edu
glemaitre@visor.udg.edu
naoyaiijima@hiroshima-u.ac.jp
ayushgup@iitk.ac.in
joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au
jam7w2@mail.missouri.edu
j.hale09@imperial.ac.uk
tw991@nyu.edu
patel_zeel@iitgn.ac.in
vincent.lostanlen@nyu.edu
stvjc@channing.harvard.edu
ritchieng@u.nus.edu
bansalsi@usc.edu
rbarnes@umn.edu
rrohan@cs.cmu.edu
liutong.zhou@columbia.edu
mdh386@nyu.edu
mlf419@nyu.edu
shreyave@usc.edu
jin.siy@northeastern.edu
samuel_ainsworth@brown.edu
cwijes1@lsu.edu
wadawson@ucdavis.edu
xinyuliu@umich.edu
rz258@cornell.edu
daniel.mallia21@myhunter.cuny.edu
argriffi@ncsu.edu
filipj@umich.edu
kms15@case.edu
sam.dixon@berkeley.edu
khong008@e.ntu.edu.sg
jnelso11@gmu.edu
jclawton@umich.edu
jaehyunahn@sogang.ac.kr
ijpulidos@unal.edu.co
gstupp@scripps.edu
justhube@umich.edu
noamkeidar@campus.technion.ac.il
nityamd@nyu.edu
css459@nyu.edu
alyee@ucsd.edu
andersk@mit.edu
dhanus@mit.edu
coreylevinson@uchicago.edu
cailean.carter@quadram.ac.uk
bral4884@colorado.edu
dschult@colgate.edu
dpwe@ee.columbia.edu
dylan.cashman@tufts.edu
pawelsendyk@berkeley.edu
qzhang90@gatech.edu
mhaberla@calpoly.edu
saketk@student.unimelb.edu.au
eunjikim@dm.snu.ac.kr
erinrhof@uw.edu
ksivaman@purdue.edu
garmstrong@ucsd.edu
konstantin.shmelkov@polytechnique.edu
e175774@ie.u-ryukyu.ac.jp
hermidal@cs.umd.edu
jbearer@hmc.edu
jmarin@csail.mit.edu
Repository Activity:
Repository Owner:
scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
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+2840
Educational commit emails
142 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+6
Science terms in README
3 scientific terms found in README
Penalties:
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PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning scikit-learn 2,431
10.1038/s41598-019-43125-6
Predicting protein-ligand interactions based on bow-pharmacological space and Bayesian additive regression treesCited by: 33
Author(s): Li Li, Ching Chiek Koh, Daniel Reker, J.B. Brown, Haishuai Wang, Nicholas Keone Lee, Hien-haw Liow, Hao Dai, H. K. Fan, Luonan Chen, Dong‐Qing Wei
Software Mentions: 7
Published: about 7 years ago
10.3389/fninf.2013.00010
The Virtual Brain: a simulator of primate brain network dynamicsCited by: 296
Author(s): Paula Sanz-Leon, S. A. Knock, Michael Woodman, Lia Domide, Jochen Mersmann, Anthony R. McIntosh, Viktor K. Jirsa
Software Mentions: 7
Published: over 13 years ago
10.1128/mSystems.00811-21
Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal TransplantationCited by: 4
Author(s): Evgenii I. Olekhnovich, A. B. Ivanov, Vladimir Ulyantsev, Elena Ilina
Software Mentions: 7
Published: almost 5 years ago
10.18632/oncotarget.27808
Identification of novel prognostic markers of survival time in high-risk neuroblastoma using gene expression profilesCited by: 6
Author(s): Abdulazeez Giwa, Azeez Ayomide Fatai, Junaid Gamieldien, Alan Christoffels, Hocine Bendou
Software Mentions: 7
Published: almost 6 years ago
10.1038/s41598-019-52584-w
Identifying inaccuracies in gene expression estimates from unstranded RNA-seq dataCited by: 8
Author(s): Mikhail Pomaznoy, Ashu Sethi, Jason A. Greenbaum, Bjoern Peters
Software Mentions: 7
Published: almost 7 years ago
10.1126/sciadv.abf7129
Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experienceCited by: 55
Author(s): Luke J. Chang, Eshin Jolly, Jin Hyun Cheong, Kristina M. Rapuano, Nathan Greenstein, Pin-Hao A. Chen, Jeremy R. Manning
Software Mentions: 7
Published: over 5 years ago
10.1371/journal.pone.0209231
Genotypic differences between strains of the opportunistic pathogen Corynebacterium bovis isolated from humans, cows, and rodentsCited by: 11
Author(s): Christopher Cheleuitte-Nieves, Christopher A. Gulvik, John R. McQuiston, Ben W. Humrighouse, Melissa Bell, Aaron Villarma, Vincent A. Fischetti, Lars F. Westblade, Neil S Lipman
Software Mentions: 7
Published: over 7 years ago
10.1038/s41598-018-22083-5
Chronic helminth infection burden differentially affects haematopoietic cell development while ageing selectively impairs adaptive responses to infectionCited by: 14
Author(s): Simon A. Babayan, Amy Sinclair, Jessica Duprez, Colin Selman
Software Mentions: 7
Published: over 8 years ago
10.3390/s21175740
BioPyC, an Open-Source Python Toolbox for Offline Electroencephalographic and Physiological Signals ClassificationCited by: 5
Author(s): Aurélien Appriou, Léa Pillette, David Trocellier, Dan Dutartre, Andrzej Cichocki, Fabien Lotte
Software Mentions: 7
Published: almost 5 years ago
10.3389/fninf.2018.00030
Information-Theoretical Analysis of EEG Microstate Sequences in PythonCited by: 13
Author(s): Frederic von Wegner, Helmut Laufs
Software Mentions: 7
Published: about 8 years ago
10.3390/nu11123045
Nutrient Estimation from 24-Hour Food Recalls Using Machine Learning and Database Mapping: A Case Study with LactoseCited by: 20
Author(s): Elizabeth Chin, Gabriel Simmons, Yasmine Bouzid, Annie Kan, D. D. Burnett, Ilias Tagkopoulos, Danielle G. Lemay
Software Mentions: 7
Published: over 6 years ago
10.1371/journal.pone.0250170
Introducing Point-of-Interest as an alternative to Area-of-Interest for fixation duration analysisCited by: 7
Author(s): Nak Won Rim, Kyoung Whan Choe, Coltan Scrivner, Marc G. Berman
Software Mentions: 7
Published: over 5 years ago
10.3389/fninf.2017.00044
SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial ScalesCited by: 13
Author(s): Martin Rueckl, Stephen C. Lenzi, Laura Moreno-Velasquez, Daniel Parthier, Dietmar Schmitz, Sten Ruediger, Friedrich W. Johenning
Software Mentions: 7
Published: about 9 years ago
10.1371/journal.pone.0225577
Designing machine learning workflows with an application to topological data analysisCited by: 4
Author(s): Eric Cawi, Patricio S. La Rosa, Arye Nehorai
Software Mentions: 7
Published: over 6 years ago
10.3389/fninf.2016.00027
CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU OctaveCited by: 386
Author(s): Nikolaas N. Oosterhof, Andrew C. Connolly, James V. Haxby
Software Mentions: 7
Published: about 10 years ago
10.3389/fgene.2019.00662
Cascaded Wx: A Novel Prognosis-Related Feature Selection Framework in Human Lung Adenocarcinoma TranscriptomesCited by: 6
Author(s): Bonggun Shin, Sung Soo Park, Ji Hyung Hong, Ho Jung An, Sang Hoon Chun, Kilsoo Kang, Young Ho Ahn, Yoon Ho Ko, Keunsoo Kang
Software Mentions: 7
Published: about 7 years ago
10.1186/s13059-020-1945-3
Protein velocity and acceleration from single-cell multiomics experimentsCited by: 43
Author(s): Gennady Gorin, Valentine Svensson, Lior Pachter
Software Mentions: 7
Published: over 6 years ago
10.3390/genes10100778
DNA Methylation Markers for Pan-Cancer Prediction by Deep LearningCited by: 48
Author(s): Biao Liu, Yulu Liu, Xingxin Pan, Mengyao Li, Shuang Yang, Shuai Cheng Li
Software Mentions: 7
Published: almost 7 years ago
10.1371/journal.pone.0218636
Characterizing the postmortem human bone microbiome from surface-decomposed remainsCited by: 23
Author(s): Alexandra L. Emmons, Amy Z. Mundorff, Sarah W. Keenan, Jonathan Davoren, Janna M. Andronowski, David Carter, Jennifer M. DeBruyn
Software Mentions: 7
Published: about 6 years ago
10.1371/journal.pmed.1002699
Deep-learning-assisted diagnosis for knee magnetic resonance imaging: Development and retrospective validation of MRNetCited by: 385
Author(s): Nicholas Bien, Pranav Rajpurkar, Robyn L. Ball, Jeremy Irvin, Allison Park, Erik Jones, Michael Bereket, Bhavik N. Patel, Kristen W. Yeom, Katie Shpanskaya, Safwan Halabi, Evan J. Zucker, Gary S. Fanton, Derek F. Amanatullah, Christopher F. Beaulieu, Geoffrey M. Riley, Russell J. Stewart, Francis G. Blankenberg, David B. Larson, Ricky Jones, Curtis P. Langlotz, Andrew Y. Ng, Matthew P. Lungren
Software Mentions: 7
Published: over 7 years ago
10.3389/fnsys.2021.692152
Age-Related Variations in Regional White Matter Volumetry and Microstructure During the Post-adolescence Period: A Cross-Sectional Study of a Cohort of 1,713 University StudentsCited by: 4
Author(s): Ami Tsuchida, Alexandre Laurent, Fabrice Crivello, Laurent Petit, Antonietta Pepe, Naka Beguedou, Stéphanie Debette, Christophe Tzourio, Bernard Mazoyer
Software Mentions: 7
Published: about 5 years ago
10.1016/j.molcel.2020.09.021
Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation FactorsCited by: 49
Author(s): Stefan Bresson, Vadim Shchepachev, Christos Spanos, Tomasz W. Turowski, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: almost 6 years ago
10.7554/eLife.45403
The dynamic conformational landscape of the protein methyltransferase SETD8Cited by: 37
Author(s): Shi Chen, Rafal Wiewiora, Fanwang Meng, Nicolas Babault, Anqi Ma, Wenyu Yu, Kun Qian, Hao Hu, Hua Zou, Junyi Wang, Shijie Fan, Gil Blum, Fábio Pittella Silva, Kyle A. Beauchamp, W. Tempel, Hualiang Jiang, Kaixian Chen, R.J. Skene, Y. George Zheng, Peter J. Brown, Jian Jin, Cheng Luo, John D. Chodera, Minkui Luo
Software Mentions: 7
Published: over 7 years ago
10.3389/fpsyt.2021.680811
TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational PsychiatryCited by: 55
Author(s): Stefan Frässle, Eduardo A. Aponte, Saskia Bollmann, Kay H. Brodersen, Ting Cao, Olivia K. Harrison, Sarah M. Harrison, Jakob Heinzle, Sandra Iglesias, Lars Kasper, Ekaterina I. Lomakina, Christoph Mathys, Matthias Müller-Schrader, Inês Pereira, Frederike H. Petzschner, Sudhir Raman, Dario Schöbi, Birte Toussaint, Lilian Weber, Yu Yao, Klaas Enno Stephan
Software Mentions: 7
Published: about 5 years ago
10.1186/s40168-020-00993-9
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic dataCited by: 61
Author(s): Laura de Nies, Sara Lopes, Susheel Bhanu Busi, Valentina Galata, Anna Heintz‐Buschart, Cédric Christian Laczny, Patrick May, Paul Wilmes
Software Mentions: 7
Published: over 5 years ago
10.1038/s41598-021-92799-4
Long-term cancer survival prediction using multimodal deep learningCited by: 60
Author(s): Luís A. Vale-Silva, Karl Rohr
Software Mentions: 7
Published: about 5 years ago
10.1038/s41598-020-58601-7
Nationwide prediction of type 2 diabetes comorbiditiesCited by: 27
Author(s): Piotr Dworzyński, Martin Aasbrenn, Klaus Rostgaard, Mads Melbye, Thomas Alexander Gerds, Henrik Hjalgrim, Tune H. Pers
Software Mentions: 7
Published: over 6 years ago
10.1016/j.mec.2019.e00089
Impact framework: A python package for writing data analysis workflows to interpret microbial physiologyCited by: 4
Author(s): Naveen Venayak, Kaushik Raj, Radhakrishnan Mahadevan
Software Mentions: 7
Published: over 6 years ago
10.1186/s13321-019-0351-x
TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and dataCited by: 25
Author(s): Dominique Sydow, Andrea Morger, Maximilian Driller, Andrea Volkamer
Software Mentions: 7
Published: over 7 years ago
10.1371/journal.pcbi.1006269
Evaluating reproducibility of AI algorithms in digital pathology with DAPPERCited by: 43
Author(s): Andrea Bizzego, Nicole Bussola, Marco Chierici, Valerio Maggio, Margherita Francescatto, Luca Cima, Marco Cristoforetti, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 7
Published: over 7 years ago
10.1038/s42003-021-02437-y
Neocortical inhibitory interneuron subtypes are differentially attuned to synchrony- and rate-coded informationCited by: 3
Author(s): Luke Y. Prince, Matthew M Tran, Dorian Grey, Lydia Saad, Helen Chasiotis, Jeehyun Kwag, Michael Köhl, Blake A Richards
Software Mentions: 7
Published: about 5 years ago
10.1371/journal.pcbi.1006741
Spatial synchronization codes from coupled rate-phase neuronsCited by: 19
Author(s): Joseph D. Monaco, Rose M. De Guzman, Hugh T. Blair, Kechen Zhang
Software Mentions: 7
Published: over 7 years ago
10.3390/brainsci11060735
Statistical and Machine Learning Link Selection Methods for Brain Functional Networks: Review and ComparisonCited by: 3
Author(s): Ilinka Ivanoska, Kire Trivodaliev, Slobodan Kalajdziski, Massimiliano Zanin
Software Mentions: 7
Published: about 5 years ago
10.34133/2020/3729715
Repeated Multiview Imaging for Estimating Seedling Tiller Counts of Wheat Genotypes Using DronesCited by: 21
Author(s): Lukas Roth, Moritz Paul Camenzind, Helge Aasen, Lukas Kronenberg, Christoph Barendregt, Karl‐Heinz Camp, Achim Walter, Norbert Kirchgeßner, Andreas Hund
Software Mentions: 7
Published: over 6 years ago
10.1186/s12859-021-04126-3
Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sourcesCited by: 6
Author(s): Neel Patel, William S. Bush
Software Mentions: 7
Published: over 5 years ago
10.3390/cancers13184710
Virtual Monoenergetic Images of Dual-Energy CT—Impact on Repeatability, Reproducibility, and Classification in RadiomicsCited by: 10
Author(s): André Euler, Fabian Christopher Laqua, D. Cester, Niklas Lohaus, Thomas Sartoretti, Daniel Pinto dos Santos, Hatem Alkadhi, Bettina Baeßler
Software Mentions: 7
Published: almost 5 years ago
10.1038/s41598-021-83784-y
Early risk assessment for COVID-19 patients from emergency department data using machine learningCited by: 57
Author(s): Stefan Heldt, Marcela P. Vizcaychipi, Sophie Peacock, Mattia Cinelli, Lachlan McLachlan, Fernando Andreotti, Stojan Jovanovic, Robert Dürichen, N. A. Lipunova, Robert A. Fletcher, Anne Hancock, Alex McCarthy, Richard A. Pointon, Alexander Brown, James Eaton, Roberto Liddi, Lucy Mackillop, Lionel Tarassenko, Rabia Khan
Software Mentions: 7
Published: over 5 years ago
10.7554/eLife.61408
Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brainCited by: 13
Author(s): David M. Young, Siavash Fazel Darbandi, Grace B. Schwartz, Zachary Bonzell, Deniz Yuruk, Mai Nojima, Leena Gole, John L.R. Rubenstein, Weimiao Yu, Stephan Sanders
Software Mentions: 7
Published: over 5 years ago
10.3389/fgene.2021.604714
Coupling of Co-expression Network Analysis and Machine Learning Validation Unearthed Potential Key Genes Involved in Rheumatoid ArthritisCited by: 8
Author(s): Jianwei Xiao, Rongsheng Wang, Xu Cai, Zhizhong Ye
Software Mentions: 7
Published: over 5 years ago
10.1038/s42003-021-01785-z
Temporal hierarchy of intrinsic neural timescales converges with spatial core-periphery organizationCited by: 42
Author(s): Mehrshad Golesorkhi, Javier Gómez‐Pilar, Shankar Tumati, Maia Fraser, Georg Northoff
Software Mentions: 7
Published: over 5 years ago
10.1038/s41416-019-0694-0
Development of PancRISK, a urine biomarker-based risk score for stratified screening of pancreatic cancer patientsCited by: 29
Author(s): Oleg Blyuss, Alexey Zaikin, Valeriia Cherepanova, Daniel Munblit, Elena M. Kiseleva, O. M. Prytomanova, Stephen W. Duffy, Tatjana Crnogorac‐Jurčević
Software Mentions: 7
Published: over 6 years ago
10.1186/s12859-019-2852-z
Differential analysis of combinatorial protein complexes with CompleXChangeCited by: 4
Author(s): Thorsten Will, Volkhard Helms
Software Mentions: 7
Published: about 7 years ago
10.1186/s13059-019-1871-4
tmap: an integrative framework based on topological data analysis for population-scale microbiome stratification and association studiesCited by: 17
Author(s): Tianhua Liao, Yuchen Wei, Mingjing Luo, Guoping Zhao, Haokui Zhou
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pone.0245157
A comparison of machine learning models versus clinical evaluation for mortality prediction in patients with sepsisCited by: 38
Author(s): William P T M van Doorn, Patricia M. Stassen, Hella F. Borggreve, Maaike J. Schalkwijk, Judith Stoffers, Otto Bekers, Steven J.R. Meex
Software Mentions: 6
Published: over 5 years ago
10.1186/s13059-019-1837-6
DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq dataCited by: 162
Author(s): Cédric Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana X. Garmire
Software Mentions: 6
Published: almost 7 years ago
10.1016/j.patter.2021.100213
Appyters: Turning Jupyter Notebooks into data-driven web appsCited by: 51
Author(s): Daniel J. B. Clarke, Minji Jeon, Daniel J. Stein, Nicole Moiseyev, Eryk Kropiwnicki, Charles Dai, Zhuorui Xie, Megan L. Wojciechowicz, Skylar Litz, Jason Hom, John Erol Evangelista, Lucas Goldman, Serena Zhang, Christine Yoon, Tahmid Ahamed, Samantha Bhuiyan, Minxuan Cheng, Julie Karam, Kathleen M. Jagodnik, Ingrid Shu, Alexander Lachmann, Sam Ayling, Sherry L. Jenkins, Avi Ma’ayan
Software Mentions: 6
Published: over 5 years ago
10.1186/s12859-019-3178-6
SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning modelsCited by: 8
Author(s): Xiaochuan Wang, Chen Li, Fuyi Li, Varun Sharma, Jiangning Song, Geoffrey I. Webb
Software Mentions: 6
Published: over 6 years ago
10.3390/v12080891
Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent DiversityCited by: 17
Author(s): Ivana Šimić, Tomaž Mark Zorec, Ivana Lojkić, Nina Krešić, Mario Poljak, Florence Cliquet, Evelyne Picard-Meyer, Marine Wasniewski, Vida Zrnčić, Anđela Čukušić, Tomislav Bedeković
Software Mentions: 6
Published: about 6 years ago
10.1007/s10710-018-9328-1
Visualising the global structure of search landscapes: genetic improvement as a case studyCited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: about 8 years ago
10.1371/journal.pone.0232534
A model for the assessment of bluetongue virus serotype 1 persistence in SpainCited by: 8
Author(s): Cecilia Aguilar-Vega, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 6
Published: over 6 years ago
10.1186/s12859-015-0759-x
CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image dataCited by: 36
Author(s): Mark‐Anthony Bray, Anne E. Carpenter
Software Mentions: 6
Published: almost 11 years ago
10.1371/journal.pone.0250282
Understanding interactions between risk factors, and assessing the utility of the additive and multiplicative models through simulationsCited by: 5
Author(s): Lina-Marcela Diaz-Gallo, Boel Brynedal, Helga Westerlind, Rickard Sandberg, Daniel Ramsköld
Software Mentions: 6
Published: over 5 years ago
10.3390/genes12071067
Total Genotype Score Modelling of Polygenic Endurance-Power Profiles in Lithuanian Elite AthletesCited by: 6
Author(s): Erinija Pranckevičienė, Valentina Ginevičienė, Audronė Jakaitienė, Laimonas Januska, Algirdas Utkus
Software Mentions: 6
Published: about 5 years ago
10.1007/s11306-020-1640-0
Migrating from partial least squares discriminant analysis to artificial neural networks: a comparison of functionally equivalent visualisation and feature contribution tools using jupyter notebooksCited by: 32
Author(s): Kevin Mendez, David Broadhurst, Stacey N. Reinke
Software Mentions: 6
Published: over 6 years ago
10.3389/fpsyg.2019.02678
Multiple Negative Emotions During Learning With Digital Learning Environments – Evidence on Their Detrimental Effect on Learning From Two Methodological ApproachesCited by: 17
Author(s): Franz Wortha, Roger Azevedo, Michelle Taub, Susanne Narciss
Software Mentions: 6
Published: over 6 years ago
10.3389/fnhum.2019.00348
EEG-Based Classification of Internally- and Externally-Directed Attention in an Augmented Reality ParadigmCited by: 34
Author(s): Lisa-Marie Vortmann, Felix Kroll, Felix Putze
Software Mentions: 6
Published: almost 7 years ago
10.3390/molecules26185574
Exploring EZH2-Proteasome Dual-Targeting Drug Discovery through a Computational Strategy to Fight Multiple MyelomaCited by: 2
Author(s): Filipe G A Estrada, Silvia Miccoli, Natália Aniceto, Alfonso T. García-Sosa, Rita C. Guedes
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pgen.1007552
High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a co-reprogramming factorCited by: 56
Author(s): Tetsuji Yamashita, Fei Zheng, David Finkelstein, Zoe Kellard, Caroline Robert, Celeste Rosencrance, Ken Sugino, John Easton, Charles Gawad, Jian Zuo
Software Mentions: 6
Published: about 8 years ago
10.3389/fimmu.2018.02342
Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery: Clinical and Computational EvidenceCited by: 18
Author(s): Alva Presbitero, Emiliano Mancini, Ruud Brands, Valeria V. Krzhizhanovskaya, Peter M. A. Sloot
Software Mentions: 6
Published: almost 8 years ago
10.1186/s12859-020-03739-4
MEIRLOP: improving score-based motif enrichment by incorporating sequence bias covariatesCited by: 5
Author(s): Nathaniel Delos Santos, Lorane Texari, Christopher Benner
Software Mentions: 6
Published: almost 6 years ago
10.3389/fmicb.2021.617949
Compositional Data Analysis of Periodontal Disease Microbial CommunitiesCited by: 9
Author(s): Laura Sisk-Hackworth, Adrian Ortiz-Velez, Micheal Reed, Scott T. Kelley
Software Mentions: 6
Published: over 5 years ago
10.7554/eLife.51085
CytoCensus, mapping cell identity and division in tissues and organs using machine learningCited by: 12
Author(s): Martin Hailstone, Dominic Waithe, Tamsin J Samuels, Yang Lu, Ita Costello, Yoav Arava, Elizabeth J. Robertson, Richard M. Parton, Ilan Davis
Software Mentions: 6
Published: over 6 years ago
10.1534/g3.114.016196
A Multipurpose, High-Throughput Single-Nucleotide Polymorphism Chip for the Dengue and Yellow Fever Mosquito, <i>Aedes aegypti</i>Cited by: 53
Author(s): Benjamin R. Evans, Andrea Gloria‐Soria, Lin Hou, Carolyn S. McBride, Mariangela Bonizzoni, Hongyu Zhao, Jeffrey R. Powell
Software Mentions: 6
Published: over 11 years ago
10.1186/s12859-021-04339-6
Predicting chemotherapy response using a variational autoencoder approachCited by: 7
Author(s): Qi Wei, Stephen A. Ramsey
Software Mentions: 6
Published: almost 5 years ago
10.1186/s13059-020-02128-7
Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysisCited by: 15
Author(s): Félix Raimundo, Céline Vallot, Jean-Philippe Vert
Software Mentions: 6
Published: almost 6 years ago
10.3389/fimmu.2018.00056
The Immune and Non-Immune Pathways That Drive Chronic Gastrointestinal Helminth Burdens in the WildCited by: 20
Author(s): Simon A. Babayan, Wei Liu, Graham Hamilton, Elizabeth Kilbride, Evelyn C. Rynkiewicz, Melanie Clerc, Amy B. Pedersen
Software Mentions: 6
Published: over 8 years ago
10.1074/mcp.O117.068122
Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine LearningCited by: 23
Author(s): Thomas W. M. Crozier, Michele Tinti, Mark Larance, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 6
Published: over 8 years ago
10.3390/nu13092983
Supplementation of 1-Kestose Modulates the Gut Microbiota Composition to Ameliorate Glucose Metabolism in Obesity-Prone HostsCited by: 10
Author(s): Ayako Watanabe, Takumi Tochio, Yasuhiro Kadota, Motoki Takahashi, Yasuyuki Kitaura, H. Ishikawa, Takanori Yasutake, Masahiro Nakano, Hiroe Shinohara, Toru Kudo, Yuichiro Nishimoto, Yoshinori Mizuguchi, Akihito Endo, Yoshiharu Shimomura
Software Mentions: 6
Published: almost 5 years ago
10.1186/s12859-020-03816-8
Graph embeddings on gene ontology annotations for protein–protein interaction predictionCited by: 14
Author(s): Xiaoshi Zhong, Jagath C. Rajapakse
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pcbi.1008044
Machine Learning based histology phenotyping to investigate the epidemiologic and genetic basis of adipocyte morphology and cardiometabolic traitsCited by: 15
Author(s): Craig A. Glastonbury, Sara L. Pulit, Julius Honecker, Jenny C Censin, Samantha Laber, Hanieh Yaghootkar, Nilüfer Rahmioğlu, Emilie Pastel, Katarina Kos, Andrew M. Pitt, Michelle Hudson, Christoffer Nellåker, Nicola L. Beer, Hans Hauner, Christian M. Becker, Krina T. Zondervan, Timothy M. Frayling, Melina Claussnitzer, Cecilia M. Lindgren
Software Mentions: 6
Published: about 6 years ago
10.2196/25000
Mortality Prediction of Patients With Cardiovascular Disease Using Medical Claims Data Under Artificial Intelligence Architectures: Validation StudyCited by: 2
Author(s): Linh Tran, Lianhua Chi, Alessio Bonti, Mohamed Abdelrazek, Yi‐Ping Phoebe Chen
Software Mentions: 6
Published: over 5 years ago
10.1186/s12864-018-5264-y
Helmsman: fast and efficient mutation signature analysis for massive sequencing datasetsCited by: 18
Author(s): Jedidiah Carlson, Jun Z. Li, Sebastian Zöllner
Software Mentions: 6
Published: over 7 years ago
10.3389/fendo.2021.626359
Metformin Strongly Affects Gut Microbiome Composition in High-Fat Diet-Induced Type 2 Diabetes Mouse Model of Both SexesCited by: 25
Author(s): Laila Silamiķele, Ivars Silamiķelis, Monta Ustinova, Zane Kalniņa, Ilze Elbere, Ramona Petrovska, Ineta Kalniņa, Jānis Kloviņš
Software Mentions: 6
Published: over 5 years ago
10.3389/fgene.2020.00238
Detection and Comparative Analysis of Methylomic Biomarkers of Rheumatoid ArthritisCited by: 4
Author(s): Xin Feng, Xubing Hao, Ruoyao Shi, Zhiqiang Xia, Lan Huang, Qiong Yu, Fengfeng Zhou
Software Mentions: 6
Published: over 6 years ago
10.1038/s41598-021-90335-y
Whole brain functional recordings at cellular resolution in zebrafish larvae with 3D scanning multiphoton microscopyCited by: 15
Author(s): Matteo Bruzzone, Enrico Chiarello, Marco Albanesi, Maria Elena Miletto Petrazzini, Aram Megighian, Claudia Lodovichi, Marco Dal Maschio
Software Mentions: 6
Published: about 5 years ago
10.1038/s41598-021-85848-5
Abnormal upregulation of cardiovascular disease biomarker PLA2G7 induced by proinflammatory macrophages in COVID-19 patientsCited by: 18
Author(s): Yang Li, Yongzhong Jiang, Yi Zhang, Naizhe Li, Qiangling Yin, Linlin Liu, Xin Lv, Yan Liu, Aqian Li, Bin Fang, Jiajia Li, Hengping Ye, Gang Ye, Xiaoxian Cui, Yang Liu, Yuanyuan Qu, Chuan Li, Jiandong Li, Dexin Li, Zhongtao Gai, Shiwen Wang, Faxian Zhan, Mifang Liang
Software Mentions: 6
Published: over 5 years ago
10.3389/fdata.2021.725095
NPARS—A Novel Approach to Address Accuracy and Reproducibility in Genomic Data ScienceCited by: 2
Author(s): Li Ma, Erich A. Peterson, Ik Jae Shin, Jason Muesse, Katy Marino, Matthew A. Steliga, Donald J. Johann
Software Mentions: 6
Published: almost 5 years ago
10.1038/s41598-021-82404-z
The evolution of humanitarian mapping within the OpenStreetMap communityCited by: 53
Author(s): Benjamin Herfort, Sven Lautenbach, João Porto de Albuquerque, Jennings Anderson, Alexander Zipf
Software Mentions: 6
Published: over 5 years ago
10.1126/scitranslmed.abi9915
Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infectionCited by: 176
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 6
Published: about 5 years ago
10.3390/ijerph18094543
A Study of the Effects of the COVID-19 Pandemic on the Experience of Back Pain Reported on Twitter® in the United States: A Natural Language Processing ApproachCited by: 13
Author(s): Krzysztof Fiok, Waldemar Karwowski, Edgar Gutiérrez, Maham Saeidi, Awad M. Aljuaid, Mohammad Reza Davahli, Redha Taı̈ar, Tadeusz Marek, Ben D. Sawyer
Software Mentions: 6
Published: over 5 years ago
10.12688/f1000research.11905.2
Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malariaCited by: 5
Author(s): Sereina Riniker, Gregory A. Landrum, Floriane Montanari, Santiago D. Villalba, Julie Maier, Johanna M. Jansen, W. Patrick Walters, Anang A. Shelat
Software Mentions: 6
Published: over 8 years ago
10.1186/s13550-020-00744-9
Repeatability of two semi-automatic artificial intelligence approaches for tumor segmentation in PETCited by: 12
Author(s): Elisabeth Pfaehler, Liesbet Mesotten, Gem Kramer, Michiel Thomeer, Karolien Vanhove, Johan de Jong, Peter Adriaensens, Otto S. Hoekstra, Ronald Boellaard
Software Mentions: 6
Published: over 5 years ago
10.1186/s13321-021-00552-w
DTi2Vec: Drug–target interaction prediction using network embedding and ensemble learningCited by: 20
Author(s): Maha A. Thafar, Rawan S. Olayan, Somayah Albaradei, Vladimir B. Bajic, Takashi Gojobori, Magbubah Essack, Xin Gao
Software Mentions: 6
Published: almost 5 years ago
10.3390/md17020081
Predicting Blood–Brain Barrier Permeability of Marine-Derived Kinase Inhibitors Using Ensemble Classifiers Reveals Potential Hits for Neurodegenerative DisordersCited by: 28
Author(s): Fabien Plisson, Andrew M. Piggott
Software Mentions: 6
Published: over 7 years ago
10.1186/s12874-019-0673-4
Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome frameworkCited by: 7
Author(s): Simon Bussy, Raphaël Veil, Vincent Looten, Anita Burgun, Stéphane Gaı̈ffas, Agathe Guilloux, Brigitte Ranque, Anne‐Sophie Jannot
Software Mentions: 6
Published: over 7 years ago
10.1186/s13321-021-00536-w
Learning protein-ligand binding affinity with atomic environment vectorsCited by: 21
Author(s): Rocco Meli, Andrew Anighoro, Michael J. Bodkin, Garrett M. Morris, Philip C. Biggin
Software Mentions: 6
Published: about 5 years ago
10.1155/2021/3774607
Automated Amharic News Categorization Using Deep Learning ModelsCited by: 9
Author(s): Demeke Endalie, Getamesay Haile
Software Mentions: 6
Published: about 5 years ago
10.1186/s13321-016-0180-0
Mapping the 3D structures of small molecule binding sitesCited by: 13
Author(s): Joshua Meyers, Nathan Brown, Julian Blagg
Software Mentions: 6
Published: over 9 years ago
10.3389/fgene.2021.667358
Improving Genomic Prediction Using High-Dimensional Secondary PhenotypesCited by: 3
Author(s): Bader Arouisse, Tom P.J.M. Theeuwen, F.A. van Eeuwijk, Willem Kruijer
Software Mentions: 6
Published: about 5 years ago
10.1186/s12885-021-08617-7
Precision treatment exploration of breast cancer based on heterogeneity analysis of lncRNAs at the single-cell levelCited by: 3
Author(s): Yan Zhang, Denan Zhang, Qingkang Meng, Ziqi Liu, Hongbo Xie, Lei Liu, Fei Xu, Xiujie Chen
Software Mentions: 6
Published: about 5 years ago
10.1038/s42003-021-02595-z
Single-cell profiling defines the prognostic benefit of CD39high tissue resident memory CD8+ T cells in luminal-like breast cancerCited by: 9
Author(s): Agnese Losurdo, Caterina Scirgolea, Giorgia Alvisi, Jolanda Brummelman, Valentina Errico, Luca Di Tommaso, Karolina Pilipow, Federico Colombo, Bethania Fernandes, Clelia Peano, Alberto Testori, Corrado Tinterri, Massimo Roncalli, Armando Santoro, Emilia Maria Cristina Mazza, Enrico Lugli
Software Mentions: 6
Published: almost 5 years ago
10.1186/s13326-019-0212-6
Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notesCited by: 6
Author(s): Mercedes Arguello-Casteleiro, Robert Stevens, Julio Des-Diz, Chris Wroe, M.J. Fernandez-Prieto, Nava Maroto, Diego Maseda-Fernandez, George Demetriou, Simon Peters, P. J. W. Noble, Phil Jones, Joanna Dukes‐McEwan, Alan Radford, John Keane, Goran Nenadić
Software Mentions: 6
Published: almost 7 years ago
10.1186/s13321-020-00447-2
DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniquesCited by: 54
Author(s): Maha A. Thafar, Rawan S. Olayan, Haitham Ashoor, Somayah Albaradei, Vladimir B. Bajic, Xin Gao, Takashi Gojobori, Magbubah Essack
Software Mentions: 6
Published: about 6 years ago
10.2196/26540
Predicting Depression From Smartphone Behavioral Markers Using Machine Learning Methods, Hyperparameter Optimization, and Feature Importance Analysis: Exploratory StudyCited by: 40
Author(s): Kennedy Opoku Asare, Yannik Terhorst, Julio Vega, Ella Peltonen, Eemil Lagerspetz, Denzil Ferreira
Software Mentions: 6
Published: about 5 years ago
10.1186/s12915-021-01002-7
A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variantsCited by: 12
Author(s): Jean-Philippe Villemin, Claudio Lorenzi, Marie-Sarah Cabrillac, Andrew Oldfield, William Ritchie, Reini F. Luco
Software Mentions: 6
Published: over 5 years ago
10.3390/metabo11040236
Metabolite Profile of Treatment-Naive Metabolic Syndrome Subjects in Relation to Cardiovascular Disease RiskCited by: 5
Author(s): Moritz V. Warmbrunn, Annefleur M. Koopen, Nicolien C. de Clercq, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Kasper W. ter Horst, Annick V. Hartstra, Mireille J. Serlie, Mariëtte T. Ackermans, Maarten R. Soeters, Daniël H. van Raalte, Mark Davids, Max Nieuwdorp, Albert K. Groen
Software Mentions: 6
Published: over 5 years ago
10.1186/s12915-021-01086-1
A phenomics approach for antiviral drug discoveryCited by: 10
Author(s): Jonne Rietdijk, Marianna Tampere, Aleksandra Pettke, Polina Georgiev, Maris Lapins, Ulrika Warpman Berglund, Ola Spjuth, Marjo-Riitta Puumalainen, Jordi Carreras-Puigvert
Software Mentions: 6
Published: about 5 years ago
10.1186/s13148-021-01029-1
Clinical evaluation of Bladder CARE, a new epigenetic test for bladder cancer detection in urine samplesCited by: 12
Author(s): Paolo Piatti, Yap Ching Chew, Michiko Suwoto, Taikun Yamada, Benjamin Jara, Xiaoteng Jia, Wei Guo, Saum Ghodoussipour, Siamak Daneshmand, Hamed Ahmadi, Jeffrey M. Rice, Jeffrey M. Bhasin, Faith Holloway, Yvonne Tsai, Yoshitomo Chihara, Gangning Liang
Software Mentions: 6
Published: over 5 years ago
10.1038/s42003-021-01908-6
Population genomics and haplotype analysis in spelt and bread wheat identifies a gene regulating glume colorCited by: 8
Author(s): Michaël Abrouk, Naveenkumar Athiyannan, Thomas Müller, Yveline Pailles, Christoph Stritt, Anne Roulin, Chenggen Chu, Shuyu Liu, Takumi Morita, Hirokazu Handa, Jesse Poland, Beat Keller, Simon G. Krattinger
Software Mentions: 6
Published: over 5 years ago
10.1007/s00429-021-02358-w
Dissecting whole-brain conduction delays through MRI microstructural measuresCited by: 6
Author(s): Matteo Mancini, Qiyuan Tian, Qiuyun Fan, Mara Cercignani, Susie Y. Huang
Software Mentions: 6
Published: about 5 years ago