Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s40168-020-00993-9
https://doi.org/10.1186/s40168-020-00993-9
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
Cited by: 61
Author(s): Laura de Nies, Sara Lopes, Susheel Bhanu Busi, Valentina Galata, Anna Heintz‐Buschart, Cédric Christian Laczny, Patrick May, Paul Wilmes
Published: over 3 years ago
Software Mentions 7
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
pypi: pandas
Powerful data structures for data analysis, time series, and statisticsPapers that mentioned: 640
pypi: scikit-learn
A set of python modules for machine learning and data miningPapers that mentioned: 2,431
pypi: snakemake
Workflow management system to create reproducible and scalable data analysesPapers that mentioned: 45