pypi: scikit-learn | Projects | Ecosyste.ms: Papers

10.1186/s12915-021-01002-7

A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants
Cited by: 12
Author(s): Jean-Philippe Villemin, Claudio Lorenzi, Marie-Sarah Cabrillac, Andrew Oldfield, William Ritchie, Reini F. Luco
Software Mentions: 6
Published: about 3 years ago

10.1007/s10710-018-9328-1

Visualising the global structure of search landscapes: genetic improvement as a case study
Cited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12915-021-01086-1

A phenomics approach for antiviral drug discovery
Cited by: 10
Author(s): Jonne Rietdijk, Marianna Tampere, Aleksandra Pettke, Polina Georgiev, Maris Lapins, Ulrika Warpman Berglund, Ola Spjuth, Marjo-Riitta Puumalainen, Jordi Carreras-Puigvert
Software Mentions: 6
Published: almost 3 years ago

10.1371/journal.pcbi.1008309

AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses
Cited by: 34
Author(s): Filip Stefaniak, Janusz Bujnicki
Software Mentions: 6
Published: over 3 years ago

10.3390/brainsci10110851

Functional and Structural Connectome Features for Machine Learning Chemo-Brain Prediction in Women Treated for Breast Cancer with Chemotherapy
Cited by: 4
Author(s): Vincent Chin‐Hung Chen, Tung-Yeh Lin, Dah-Cherng Yeh, Jyh‐Wen Chai, Jun‐Cheng Weng
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-019-38979-9

Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers
Cited by: 10
Author(s): Aziz Khan, Xuegong Zhang
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0244175

Rapid detection of fast innovation under the pressure of COVID-19
Cited by: 11
Author(s): Nicola Melluso, Andrea Bonaccorsi, Filippo Chiarello, Gualtiero Fantoni
Software Mentions: 6
Published: over 3 years ago

10.1186/s13321-020-00447-2

DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques
Cited by: 54
Author(s): Maha A. Thafar, Rawan S. Olayan, Haitham Ashoor, Somayah Albaradei, Vladimir B. Bajic, Xin Gao, Takashi Gojobori, Magbubah Essack
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13326-019-0212-6

Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes
Cited by: 6
Author(s): Mercedes Arguello-Casteleiro, Robert Stevens, Julio Des-Diz, Chris Wroe, M.J. Fernandez-Prieto, Nava Maroto, Diego Maseda-Fernandez, George Demetriou, Simon Peters, P. J. W. Noble, Phil Jones, Joanna Dukes‐McEwan, Alan Radford, John Keane, Goran Nenadić
Software Mentions: 6
Published: over 4 years ago

10.1001/jamanetworkopen.2021.8075

Assessment of Overuse of Medical Tests and Treatments at US Hospitals Using Medicare Claims
Cited by: 21
Author(s): Kelsey Chalmers, Philip E. Smith, Judith A. Garber, Valérie Gopinath, Shannon Brownlee, Allen D. Schwartz, Adam G Elshaug, Vikas Saini
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0245157

A comparison of machine learning models versus clinical evaluation for mortality prediction in patients with sepsis
Cited by: 38
Author(s): William P T M van Doorn, Patricia M. Stassen, Hella F. Borggreve, Maaike J. Schalkwijk, Judith Stoffers, Otto Bekers, Steven J.R. Meex
Software Mentions: 6
Published: over 3 years ago

10.1186/s13321-016-0180-0

Mapping the 3D structures of small molecule binding sites
Cited by: 13
Author(s): Joshua Meyers, Nathan Brown, Julian Blagg
Software Mentions: 6
Published: over 7 years ago

10.1186/s13007-020-00591-8

The BELT and phenoSEED platforms: shape and colour phenotyping of seed samples
Cited by: 18
Author(s): Keith Halcro, Kaitlin McNabb, Ashley Lockinger, Didier Socquet-Juglard, Kirstin E. Bett, Scott D. Noble
Software Mentions: 6
Published: about 4 years ago

10.1186/s13059-021-02435-7

DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cell
Cited by: 15
Author(s): Xiao Li, Guangjie Zeng, Angsheng Li, Zhihua Zhang
Software Mentions: 6
Published: almost 3 years ago

10.1371/journal.pone.0203725

An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs)
Cited by: 15
Author(s): Björn Harink, Huy Nguyen, Kurt S. Thorn, Polly M. Fordyce
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0250282

Understanding interactions between risk factors, and assessing the utility of the additive and multiplicative models through simulations
Cited by: 5
Author(s): Lina-Marcela Diaz-Gallo, Boel Brynedal, Helga Westerlind, Rickard Sandberg, Daniel Ramsköld
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0236878

Modeling cannabinoids from a large-scale sample of Cannabis sativa chemotypes
Cited by: 12
Author(s): Daniela Vergara, Reggie Gaudino, Thomas Blank, Brian Keegan
Software Mentions: 6
Published: over 3 years ago

10.1093/gigascience/giab058

Scalable analysis of multi-modal biomedical data
Cited by: 3
Author(s): Jaclyn Smith, Yao Shi, Michael Benedikt, Miloš Nikolić
Software Mentions: 6
Published: over 2 years ago

10.1371/journal.pone.0207967

Lateral ventricle volume trajectories predict response inhibition in older age—A longitudinal brain imaging and machine learning approach
Cited by: 11
Author(s): Astri J. Lundervold, Alexandra Vik
Software Mentions: 6
Published: about 5 years ago

10.1186/s13059-020-02128-7

Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis
Cited by: 15
Author(s): Félix Raimundo, Céline Vallot, Jean-Philippe Vert
Software Mentions: 6
Published: over 3 years ago

10.1186/s13059-019-1871-4

tmap: an integrative framework based on topological data analysis for population-scale microbiome stratification and association studies
Cited by: 17
Author(s): Tianhua Liao, Yuchen Wei, Mingjing Luo, Guoping Zhao, Haokui Zhou
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pcbi.1008044

Machine Learning based histology phenotyping to investigate the epidemiologic and genetic basis of adipocyte morphology and cardiometabolic traits
Cited by: 15
Author(s): Craig A. Glastonbury, Sara L. Pulit, Julius Honecker, Jenny C Censin, Samantha Laber, Hanieh Yaghootkar, Nilüfer Rahmioğlu, Emilie Pastel, Katarina Kos, Andrew M. Pitt, Michelle Hudson, Christoffer Nellåker, Nicola L. Beer, Hans Hauner, Christian M. Becker, Krina T. Zondervan, Timothy M. Frayling, Melina Claussnitzer, Cecilia M. Lindgren
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13059-019-1837-6

DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data
Cited by: 162
Author(s): Cédric Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana X. Garmire
Software Mentions: 6
Published: over 4 years ago

10.1136/gutjnl-2020-323877

Blue poo: impact of gut transit time on the gut microbiome using a novel marker
Cited by: 61
Author(s): Francesco Asnicar, Emily R Leeming, Eirini Dimidi, Mohsen Mazidi, Paul W. Franks, Haya Al Khatib, Ana M. Valdes, Richard Davies, Elco Bakker, Lucy Francis, Andrew T. Chan, Rachel Gibson, George Hadjigeorgiou, Jonathan Wolf, Timothy D. Spector, Nicola Segata, Sarah Berry
Software Mentions: 6
Published: about 3 years ago

10.1186/s13321-021-00536-w

Learning protein-ligand binding affinity with atomic environment vectors
Cited by: 21
Author(s): Rocco Meli, Andrew Anighoro, Michael J. Bodkin, Garrett M. Morris, Philip C. Biggin
Software Mentions: 6
Published: almost 3 years ago

10.2196/20840

Use of Patient-Reported Symptoms from an Online Symptom Tracking Tool for Dementia Severity Staging: Development and Validation of a Machine Learning Approach
Cited by: 8
Author(s): Aaqib Shehzad, Kenneth Rockwood, Justin Stanley, Taylor Dunn, Susan E. Howlett
Software Mentions: 6
Published: over 3 years ago

10.1007/s00415-020-09859-4

Posterior circulation stroke: machine learning-based detection of early ischemic changes in acute non-contrast CT scans
Cited by: 12
Author(s): Helge Kniep, Peter Sporns, Gabriel Broocks, André Kemmling, Jawed Nawabi, Thilo Rusche, Jens Fiehler, Uta Hanning
Software Mentions: 6
Published: about 4 years ago

10.1523/JNEUROSCI.2317-20.2021

Disentangling Semantic Composition and Semantic Association in the Left Temporal Lobe
Cited by: 6
Author(s): Jixing Li, Liina Pylkkänen
Software Mentions: 6
Published: almost 3 years ago

10.2196/27344

Discovery of Depression-Associated Factors From a Nationwide Population-Based Survey: Epidemiological Study Using Machine Learning and Network Analysis
Cited by: 9
Author(s): Sang Min Nam, Thomas A Peterson, Kyoung Yul Seo, Hyun Wook Han, Jee In Kang
Software Mentions: 6
Published: almost 3 years ago

10.1186/s13550-020-00744-9

Repeatability of two semi-automatic artificial intelligence approaches for tumor segmentation in PET
Cited by: 12
Author(s): Elisabeth Pfaehler, Liesbet Mesotten, Gem Kramer, Michiel Thomeer, Karolien Vanhove, Johan de Jong, Peter Adriaensens, Otto S. Hoekstra, Ronald Boellaard
Software Mentions: 6
Published: over 3 years ago

10.3389/fninf.2021.689675

Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies
Cited by: 47
Author(s): Alexandre Routier, Ninon Burgos, Mauricio Díaz, Michael Bacci, Simona Bottani, Omar El-Rifai, Sabrina Fontanella, Pietro Gori, Jérémy Guillon, A. Guyot, Ravi Hassanaly, Thomas Jacquemont, Pascal Lu, Arnaud Marcoux, T. Moreau, Jorge Samper‐Gonzàlez, Marc Teichmann, Elina Thibeau–Sutre, Ghislain Vaillant, Junhao Wen, Adam Wild, Marie‐Odile Habert, Stanley Durrleman, Olivier Colliot
Software Mentions: 6
Published: almost 3 years ago

10.3389/fninf.2014.00034

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages
Cited by: 45
Author(s): Juan Nunez-Iglesias, Ryan Kennedy, Stephen M. Plaza, Anirban Chakraborty, William T. Katz
Software Mentions: 6
Published: about 10 years ago

10.3389/fninf.2020.00031

Pycabnn: Efficient and Extensible Software to Construct an Anatomical Basis for a Physiologically Realistic Neural Network Model
Cited by: 4
Author(s): Ines Wichert, Sanghun Jee, Erik De Schutter, Sungho Hong
Software Mentions: 6
Published: almost 4 years ago

10.3389/fpls.2021.609684

Transcriptomics of Differential Ripening in ‘d’Anjou’ Pear (Pyrus communis L.)
Cited by: 5
Author(s): Loren Honaas, Heidi Hargarten, John A. Hadish, Stephen P. Ficklin, Sara Serra, Stefano Musacchi, Eric Wafula, James P. Mattheis, Claude W. dePamphilis, David R. Rudell
Software Mentions: 6
Published: almost 3 years ago

10.1038/s42003-021-02595-z

Single-cell profiling defines the prognostic benefit of CD39high tissue resident memory CD8+ T cells in luminal-like breast cancer
Cited by: 9
Author(s): Agnese Losurdo, Caterina Scirgolea, Giorgia Alvisi, Jolanda Brummelman, Valentina Errico, Luca Di Tommaso, Karolina Pilipow, Federico Colombo, Bethania Fernandes, Clelia Peano, Alberto Testori, Corrado Tinterri, Massimo Roncalli, Armando Santoro, Emilia Maria Cristina Mazza, Enrico Lugli
Software Mentions: 6
Published: over 2 years ago

10.12688/f1000research.11905.2

Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria
Cited by: 5
Author(s): Sereina Riniker, Gregory A. Landrum, Floriane Montanari, Santiago D. Villalba, Julie Maier, Johanna M. Jansen, W. Patrick Walters, Anang A. Shelat
Software Mentions: 6
Published: about 6 years ago

10.3390/ijms21197271

LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature Fusion
Cited by: 9
Author(s): Shiyao Feng, Ying Li, Wei Du, Wei Lv, Ying Li
Software Mentions: 6
Published: over 3 years ago

10.1126/scitranslmed.abi9915

Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infection
Cited by: 176
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 6
Published: almost 3 years ago

10.12688/f1000research.51117.1

Data extraction methods for systematic review (semi)automation: A living systematic review
Cited by: 24
Author(s): Lena Schmidt, Babatunde Kazeem Olorisade, Luke A McGuinness, James Thomas, Julian P T Higgins
Software Mentions: 6
Published: about 3 years ago

10.3389/fninf.2017.00021

Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System
Cited by: 8
Author(s): Jonathan Passerat–Palmbach, Romain Reuillon, Mathieu Leclaire, Antonios Makropoulos, Emma C. Robinson, Sarah Parisot, Daniel Rueckert
Software Mentions: 6
Published: about 7 years ago

10.7554/eLife.55325

Parallel CRISPR-Cas9 screens clarify impacts of p53 on screen performance
Cited by: 32
Author(s): A. Bowden, David A Morales-Juarez, Matylda Sczaniecka-Clift, Maria Martin Agudo, Natalia Lukashchuk, John Christopher Thomas, Stephen Jackson
Software Mentions: 6
Published: almost 4 years ago

10.3389/fninf.2014.00022

SCoT: a Python toolbox for EEG source connectivity
Cited by: 21
Author(s): Martin Billinger, Clemens Brunner, Gernot Müller-Putz
Software Mentions: 6
Published: about 10 years ago

10.1155/2021/3774607

Automated Amharic News Categorization Using Deep Learning Models
Cited by: 9
Author(s): Demeke Endalie, Getamesay Haile
Software Mentions: 6
Published: almost 3 years ago

10.3390/ijms21197281

SPOTONE: Hot Spots on Protein Complexes with Extremely Randomized Trees via Sequence-Only Features
Cited by: 10
Author(s): António Preto, Irina S. Moreira
Software Mentions: 5
Published: over 3 years ago

10.1016/j.compbiomed.2015.12.002

Rapid development of image analysis research tools: Bridging the gap between researcher and clinician with pyOsiriX
Cited by: 33
Author(s): Matthew Blackledge, David J. Collins, Dow‐Mu Koh, Martin O. Leach
Software Mentions: 5
Published: over 8 years ago

10.3389/frai.2021.680564

Topological Data Analysis Highlights Novel Geographical Signatures of the Human Gut Microbiome
Cited by: 3
Author(s): Eva Lymberopoulos, Giorgia Isabella Gentili, Muhannad Alomari, Nikhil Sharma
Software Mentions: 5
Published: almost 3 years ago

10.3390/nu12082308

Plasma Metabolites Related to Peripheral and Hepatic Insulin Sensitivity Are Not Directly Linked to Gut Microbiota Composition
Cited by: 6
Author(s): Annefleur M. Koopen, Nicolien C. de Clercq, Moritz V. Warmbrunn, Hilde Herrema, Mark Davids, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Max Nieuwdorp, Albert K. Groen, Andrei Prodan
Software Mentions: 5
Published: almost 4 years ago

10.1016/j.csbj.2021.05.028

Distinguishing between PTEN clinical phenotypes through mutation analysis
Cited by: 14
Author(s): Stephanie Portelli, Lucy Barr, Alex Guimarães Cardoso de Sá, Douglas E. V. Pires, David B. Ascher
Software Mentions: 5
Published: over 3 years ago

10.3389/frai.2020.559617

An Interpretable Predictive Model of Vaccine Utilization for Tanzania
Cited by: 1
Author(s): R. Hariharan, Johnna Sundberg, Giacomo Gallino, Ashley Schmidt, Drew Arenth, Suvrit Sra, Benjamin Fels
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.531476

Application of MRI Radiomics-Based Machine Learning Model to Improve Contralateral BI-RADS 4 Lesion Assessment
Cited by: 11
Author(s): Hao Wen, Jing Gong, Shengping Wang, Hui Zhu, Bin Zhao, Weijun Peng
Software Mentions: 5
Published: over 3 years ago

10.1155/2021/5522729

Prediction of COVID-19 with Computed Tomography Images using Hybrid Learning Techniques
Cited by: 13
Author(s): P. Varalakshmi, Vasumathi Narayanan, Sakthi Jaya Sundar Rajasekar
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-021-95748-3

Comparison of machine and deep learning for the classification of cervical cancer based on cervicography images
Cited by: 31
Author(s): Ye Rang Park, Young Jae Kim, Woong Ju, Kae Hyun Nam, Soonyung Kim, Kwang Gi Kim
Software Mentions: 5
Published: almost 3 years ago

10.3389/fninf.2019.00053

A Comparison of Shallow and Deep Learning Methods for Predicting Cognitive Performance of Stroke Patients From MRI Lesion Images
Cited by: 52
Author(s): Sucheta Chauhan, Lovekesh Vig, Michele De Filippo De Grazia, Maurizio Corbetta, Shandar Ahmad, Marco Zorzi
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.66018

Information flow, cell types and stereotypy in a full olfactory connectome
Cited by: 82
Author(s): Philipp Schlegel, Alexander Shakeel Bates, Tomke Stürner, Sridhar R. Jagannathan, Nikolas Drummond, Joseph Hsu, Laia Serratosa Capdevila, Alexandre Javier, Elizabeth C. Marin, Asa Barth-Maron, Imaan F M Tamimi, Feng Li, Gerald M. Rubin, Stephen M. Plaza, Marta Costa, Gregory Jefferis
Software Mentions: 5
Published: almost 3 years ago

10.3389/frai.2020.536086

Attitudes Toward Multilingualism in Luxembourg. A Comparative Analysis of Online News Comments and Crowdsourced Questionnaire Data
Cited by: 5
Author(s): Christoph Purschke
Software Mentions: 5
Published: over 3 years ago

10.2196/15371

Transfer Learning for Risk Classification of Social Media Posts: Model Evaluation Study
Cited by: 21
Author(s): Derek Howard, Marta M. Maslej, Justin Lee, Jacob Ritchie, Geoffrey Woollard, Leon French
Software Mentions: 5
Published: about 4 years ago

10.3389/frai.2020.00013

Designing and Evaluating the Usability of a Machine Learning API for Rapid Prototyping Music Technology
Cited by: 5
Author(s): Francisco Bernardo, Michael Zbyszyński, Mick Grierson, Rebecca Fiebrink
Software Mentions: 5
Published: about 4 years ago

10.21105/joss.00934

q2-sample-classifier: machine-learning tools for microbiome classification and regression
Cited by: 105
Author(s): Nicholas A. Bokulich, Matthew R. Dillon, Evan Bolyen, Benjamin Kaehler, Gavin A. Huttley, J. Gregory Caporaso
Software Mentions: 5
Published: over 5 years ago

10.3390/e22111198

FASTENER Feature Selection for Inference from Earth Observation Data
Cited by: 2
Author(s): Filip Koprivec, Klemen Kenda, Beno Šircelj
Software Mentions: 5
Published: over 3 years ago

10.2196/15293

Detection of Suicidality Among Opioid Users on Reddit: Machine Learning–Based Approach
Cited by: 24
Author(s): Hannah Yao, Sina Rashidian, Xinyu Dong, Hongyi Duanmu, Richard N. Rosenthal, Fusheng Wang
Software Mentions: 5
Published: over 3 years ago

10.1242/dev.183855

Aging induces aberrant state transition kinetics in murine muscle stem cells
Cited by: 50
Author(s): Jacob C. Kimmel, Ara B. Hwang, Annarita Scaramozza, Wallace F. Marshall, Andrew S. Brack
Software Mentions: 5
Published: over 4 years ago

10.2196/13822

Detecting Developmental Delay and Autism Through Machine Learning Models Using Home Videos of Bangladeshi Children: Development and Validation Study
Cited by: 76
Author(s): Qandeel Tariq, Scott L. Fleming, Jessey Schwartz, Kaitlyn Dunlap, Conor K. Corbin, Peter Washington, Haik Kalantarian, Naila Zaman Khan, Gary L. Darmstadt, Dennis P. Wall
Software Mentions: 5
Published: about 5 years ago

10.3389/fnut.2020.577923

A Machine Learning Based Dose Prediction of Lutein Supplements for Individuals With Eye Fatigue
Cited by: 4
Author(s): Juntao Kan, Ao Li, Hong Zou, Liang Chen, Jun Du
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2021.604584

Analysis of Gut Microbiome Using Explainable Machine Learning Predicts Risk of Diarrhea Associated With Tyrosine Kinase Inhibitor Neratinib: A Pilot Study
Cited by: 13
Author(s): Chi Wah Wong, Susan E. Yost, Jin Sung Lee, John D. Gillece, Megan Folkerts, Lauren Reining, Sarah K. Highlander, Zahra Eftekhari, Joanne Mortimer, Yuan Yuan
Software Mentions: 5
Published: about 3 years ago

10.3389/fninf.2017.00025

Pypes: Workflows for Processing Multimodal Neuroimaging Data
Cited by: 10
Author(s): Alexandre Savio, Michael Schütte, Manuel Graña, Igor Yakushev
Software Mentions: 5
Published: about 7 years ago

10.1186/s12974-019-1500-x

Contribution of LTi and TH17 cells to B cell aggregate formation in the central nervous system in a mouse model of multiple sclerosis
Cited by: 18
Author(s): Verena Schropp, Jörn Rohde, Damiano M. Rovituso, Samir Jabari, Richa Bharti, Stefanie Küerten
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.63450

Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
Cited by: 28
Author(s): Qijing Xie, Maria Brbić, Felix Horns, Sai Saroja Kolluru, Robert C. Jones, Jiefu Li, Anay R Reddy, Anthony Xie, Sayeh Kohani, Zhuoran Li, Colleen N. McLaughlin, Tongchao Li, Chuanyun Xu, David Vacek, David J. Luginbuhl, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.63856

Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila
Cited by: 60
Author(s): Colleen N. McLaughlin, Maria Brbić, Qijing Xie, Tongchao Li, Felix Horns, Sai Saroja Kolluru, Justus M. Kebschull, David Vacek, Anthony Xie, Jiefu Li, Robert C. Jones, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
Software Mentions: 5
Published: over 3 years ago

10.3389/fninf.2018.00089

BindsNET: A Machine Learning-Oriented Spiking Neural Networks Library in Python
Cited by: 159
Author(s): Hananel Hazan, Daniel J. Saunders, Hassaan F. Khan, Devdhar Patel, Darpan T. Sanghavi, Hava T. Siegelmann, Róbert Kozma
Software Mentions: 5
Published: over 5 years ago

10.3390/s19030521

A Comparison of Machine Learning and Deep Learning Techniques for Activity Recognition using Mobile Devices
Cited by: 37
Author(s): Alejandro Baldominos, Alejandro Cervantes, Yago Sáez, Pedro Isasi
Software Mentions: 5
Published: over 5 years ago

10.18632/oncotarget.23748

Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of <i>COX7A1</i> in embryonic and cancer cells
Cited by: 27
Author(s): Michael West, Ivan Labat, Hal Sternberg, Dana Larocca, Igor O. Nasonkin, Karen Chapman, Ratnesh Singh, Eugene Makarev, Alex Aliper, Andrey Kazennov, Andrey Alekseenko, Nikolai Shuvalov, Evgenia Cheskidova, Aleksandr Alekseev, Artemov Av, Evgeny Putin, Polina Mamoshina, Nikita Pryanichnikov, Jacob Larocca, Karen A. F. Copeland, Evgeny Izumchenko, Mikhail Korzinkin, Alex Zhavoronkov
Software Mentions: 5
Published: over 6 years ago

10.3390/nu13093289

Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area
Cited by: 13
Author(s): Manon Balvers, Mélanie Deschasaux, Bert‐Jan H. van den Born, Koos Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 5
Published: over 2 years ago

10.1186/s13059-017-1196-0

The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy
Cited by: 88
Author(s): Andrej Trauner, Qingyun Liu, Laura E. Via, Xin Liu, Xianglin Ruan, Lili Liang, Huimin Shi, Ying Chen, Ziling Wang, Ruixia Liang, Wei Zhang, Wei Wang, Jingcai Gao, Gang Sun, Daniela Brites, Kathleen England, Guolong Zhang, Sébastien Gagneux, Clifton E. Barry, Qian Gao
Software Mentions: 5
Published: about 7 years ago

10.3389/frma.2021.644614

PubMed-Scale Chemical Concept Embeddings Reconstruct Physical Protein Interaction Networks
Cited by: 0
Author(s): Blaž Škrlj, Enja Kokalj, Nada Lavrač
Software Mentions: 5
Published: about 3 years ago

10.7554/eLife.69068

Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology
Cited by: 26
Author(s): Joshua H. Siegle, Peter Ledochowitsch, Xiaoxuan Jia, Daniel Millman, Gabriel Koch Ocker, Shiella Caldejon, Linzy Casal, Andy Cho, Daniel J. Denman, Séverine Durand, Peter A. Groblewski, Gregg Heller, India Kato, Sara Kivikas, Jérôme Lecoq, Chelsea Nayan, Kiet Ngo, Philip R. Nicovich, Kat North, Tamina K Ramirez, Jackie Swapp, Xana Waughman, Ali Williford, Shawn R. Olsen, Christof Koch, Michael A. Buice, Saskia E. J. de Vries
Software Mentions: 5
Published: almost 3 years ago

10.3389/fpsyt.2016.00130

Development and Clinical Evaluation of an mHealth Application for Stress Management
Cited by: 26
Author(s): Brent Winslow, George L. Chadderdon, Sara Dechmerowski, David Jones, Solomon Kalkstein, Jennifer L. Greene, Philip Gehrman
Software Mentions: 5
Published: almost 8 years ago

10.3390/ijerph18189912

Assessing Patient-Perceived Hospital Service Quality and Sentiment in Malaysian Public Hospitals Using Machine Learning and Facebook Reviews
Cited by: 12
Author(s): Afiq Izzudin A. Rahim, Mohd Ismail Ibrahim, Kamarul Imran Musa, Sook-Ling Chua, Najib Majdi Yaacob
Software Mentions: 5
Published: over 2 years ago

10.1186/s12911-020-1046-y

Monitoring stance towards vaccination in twitter messages
Cited by: 20
Author(s): Florian Kunneman, Mattijs Lambooij, Albert Wong, Antal van den Bosch, Liesbeth Mollema
Software Mentions: 5
Published: about 4 years ago

10.2196/24073

A Natural Language Processing–Based Virtual Patient Simulator and Intelligent Tutoring System for the Clinical Diagnostic Process: Simulator Development and Case Study
Cited by: 14
Author(s): Raffaello Furlan, Mauro Gatti, Roberto Menè, Dana Shiffer, Chiara Marchiori, Alessandro Giaj Levra, Vincenzo Saturnino, Enrico Brunetta, Franca Dipaola
Software Mentions: 5
Published: about 3 years ago

10.3389/fimmu.2018.02059

A Distinct Esophageal mRNA Pattern Identifies Eosinophilic Esophagitis Patients With Food Impactions
Cited by: 8
Author(s): Benjamin F. Sallis, Utkucan Acar, Kelsey Hawthorne, Stephen Babcock, Cynthia Kanagaratham, Jeffrey D. Goldsmith, Rachel Rosen, Jon A. Vanderhoof, Samuel Nurko, Edda Fiebiger
Software Mentions: 5
Published: over 5 years ago

10.1128/mSystems.00913-20

Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation Mechanisms
Cited by: 23
Author(s): Nicole Pearcy, Yue Hu, Michelle Baker, Alexandre Maciel-Guerra, Ning Xue, Wei Wang, Jasmeet Kaler, Zong–Gen Peng, Fengqin Li, Tania Dottorini
Software Mentions: 5
Published: over 2 years ago

10.1128/mSystems.00093-19

Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow Cytometry
Cited by: 14
Author(s): Peter Rubbens, Marian L. Schmidt, Ruben Props, Bopaiah A. Biddanda, Nico Boon, Willem Waegeman, Vincent J. Denef
Software Mentions: 5
Published: over 4 years ago

10.1186/s12859-019-2645-4

reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction
Cited by: 5
Author(s): Risa Karakida Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pntd.0004549

Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients
Cited by: 52
Author(s): Andrés Colubri, Thomas Silver, Terrence Fradet, Kalliroi Retzepi, Benjamin N. Fry, Pardis C. Sabeti
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pcbi.1005541

High-order epistasis shapes evolutionary trajectories
Cited by: 88
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 5
Published: about 7 years ago

10.1186/s12859-020-03661-9

METROID: an automated method for robust quantification of subcellular fluorescence events at low SNR
Cited by: 0
Author(s): Marcelo Zoccoler, Pedro Xavier de Oliveira
Software Mentions: 5
Published: almost 4 years ago

10.3390/toxins13090669

Force Mapping Study of Actinoporin Effect in Membranes Presenting Phase Domains
Cited by: 4
Author(s): Katia Cosentino, Edward Hermann, Nicolai von Kügelgen, Joseph D. Unsay, Uris Ros, Ana J. García‐Sáez
Software Mentions: 5
Published: over 2 years ago

10.3390/s20236712

PADL: A Modeling and Deployment Language for Advanced Analytical Services
Cited by: 6
Author(s): Josu Díaz-de-Arcaya, Raúl Miñón, Ana I. Torre-Bastida, Javier Del Ser, Aitor Almeida
Software Mentions: 5
Published: over 3 years ago

10.1186/s40064-015-1356-1

Accurate mobile malware detection and classification in the cloud
Cited by: 26
Author(s): Xiaolei Wang, Yuexiang Yang, Yingzhi Zeng
Software Mentions: 5
Published: over 8 years ago

10.1101/2020.12.21.423860

Analyzing the vast coronavirus literature with CoronaCentral
Cited by: 3
Author(s): Jake Lever, Russ B. Altman
Software Mentions: 5
Published: over 3 years ago

10.1186/s12911-017-0556-8

Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach
Cited by: 111
Author(s): Wei-Hung Weng, Kavishwar B. Wagholikar, Alexa T. McCray, Peter Szolovits, Henry C. Chueh
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1007636

Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice
Cited by: 23
Author(s): Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pcbi.1009108

Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitis
Cited by: 5
Author(s): Necati Esener, Alexandre Maciel-Guerra, Katharina Giebel, Daniel Lea, Martin J. Green, Andrew J. Bradley, Tania Dottorini
Software Mentions: 5
Published: almost 3 years ago

10.1186/s12911-020-01154-6

A predictive analytics model for differentiating between transient ischemic attacks (TIA) and its mimics
Cited by: 9
Author(s): Alia Stanciu, Mihai Banciu, Alireza Sadighi, Kyle Marshall, Neil R. Holland, Vida Abedi, Ramin Zand
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pcbi.1008229

DeepHE: Accurately predicting human essential genes based on deep learning
Cited by: 24
Author(s): Xue Zhang, Wangxin Xiao, Weijia Xiao
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-019-2969-0

Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models
Cited by: 24
Author(s): Marina Esteban-Medina, María Peña‐Chilet, Carlos Loucera, Joaquı́n Dopazo
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1009316

A probabilistic model for the ultradian timing of REM sleep in mice
Cited by: 6
Author(s): Sung-Ho Park, Justin Baik, June Seok Hong, Hanna Antila, Benjamin Kurland, Shinjae Chung, Franz Weber
Software Mentions: 5
Published: over 2 years ago

10.3389/fgene.2019.01387

Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development
Cited by: 7
Author(s): Cameron P. Gallivan, Honglei Ren, Elizabeth L. Read
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2020.601145

Spontaneous Membrane Nanodomain Formation in the Absence or Presence of the Neurotransmitter Serotonin
Cited by: 11
Author(s): Anna Bochicchio, Astrid F. Brandner, Oskar Engberg, Daniel Huster, Rainer A. Böckmann
Software Mentions: 5
Published: over 3 years ago

10.1186/s40168-021-01056-3

Anna Karenina and the subgingival microbiome associated with periodontitis
Cited by: 15
Author(s): Khaled Altabtbaei, Pooja Maney, Sukirth M. Ganesan, Shareef M Dabdoub, Haikady N. Nagaraja, Purnima Kumar
Software Mentions: 5
Published: about 3 years ago

Projects: pypi: scikit-learn

Papers Mentioning scikit-learn 2,431