pypi: scikit-learn | Projects | Ecosyste.ms: Papers

10.1186/s13321-019-0351-x

TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data
Cited by: 25
Author(s): Dominique Sydow, Andrea Morger, Maximilian Driller, Andrea Volkamer
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0239381

Short k-mer abundance profiles yield robust machine learning features and accurate classifiers for RNA viruses
Cited by: 8
Author(s): Nafis Ul Alam, Umar Faruq Chowdhury
Software Mentions: 7
Published: over 3 years ago

10.7554/eLife.45403

The dynamic conformational landscape of the protein methyltransferase SETD8
Cited by: 37
Author(s): Shi Chen, Rafal Wiewiora, Fanwang Meng, Nicolas Babault, Anqi Ma, Wenyu Yu, Kun Qian, Hao Hu, Hua Zou, Junyi Wang, Shijie Fan, Gil Blum, Fábio Pittella Silva, Kyle A. Beauchamp, W. Tempel, Hualiang Jiang, Kaixian Chen, R.J. Skene, Y. George Zheng, Peter J. Brown, Jian Jin, Cheng Luo, John D. Chodera, Minkui Luo
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2019.00662

Cascaded Wx: A Novel Prognosis-Related Feature Selection Framework in Human Lung Adenocarcinoma Transcriptomes
Cited by: 6
Author(s): Bonggun Shin, Sung Soo Park, Ji Hyung Hong, Ho Jung An, Sang Hoon Chun, Kilsoo Kang, Young Ho Ahn, Yoon Ho Ko, Keunsoo Kang
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0209231

Genotypic differences between strains of the opportunistic pathogen Corynebacterium bovis isolated from humans, cows, and rodents
Cited by: 11
Author(s): Christopher Cheleuitte-Nieves, Christopher A. Gulvik, John R. McQuiston, Ben W. Humrighouse, Melissa Bell, Aaron Villarma, Vincent A. Fischetti, Lars F. Westblade, Neil S Lipman
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0250170

Introducing Point-of-Interest as an alternative to Area-of-Interest for fixation duration analysis
Cited by: 7
Author(s): Nak Won Rim, Kyoung Whan Choe, Coltan Scrivner, Marc G. Berman
Software Mentions: 7
Published: about 3 years ago

10.1038/s41598-021-83784-y

Early risk assessment for COVID-19 patients from emergency department data using machine learning
Cited by: 57
Author(s): Stefan Heldt, Marcela P. Vizcaychipi, Sophie Peacock, Mattia Cinelli, Lachlan McLachlan, Fernando Andreotti, Stojan Jovanovic, Robert Dürichen, N. A. Lipunova, Robert A. Fletcher, Anne Hancock, Alex McCarthy, Richard A. Pointon, Alexander Brown, James Eaton, Roberto Liddi, Lucy Mackillop, Lionel Tarassenko, Rabia Khan
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0225577

Designing machine learning workflows with an application to topological data analysis
Cited by: 4
Author(s): Eric Cawi, Patricio S. La Rosa, Arye Nehorai
Software Mentions: 7
Published: over 4 years ago

10.3389/fgene.2021.604714

Coupling of Co-expression Network Analysis and Machine Learning Validation Unearthed Potential Key Genes Involved in Rheumatoid Arthritis
Cited by: 8
Author(s): Jianwei Xiao, Rongsheng Wang, Xu Cai, Zhizhong Ye
Software Mentions: 7
Published: over 3 years ago

10.7554/eLife.61408

Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brain
Cited by: 13
Author(s): David M. Young, Siavash Fazel Darbandi, Grace B. Schwartz, Zachary Bonzell, Deniz Yuruk, Mai Nojima, Leena Gole, John L.R. Rubenstein, Weimiao Yu, Stephan Sanders
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-020-58601-7

Nationwide prediction of type 2 diabetes comorbidities
Cited by: 27
Author(s): Piotr Dworzyński, Martin Aasbrenn, Klaus Rostgaard, Mads Melbye, Thomas Alexander Gerds, Henrik Hjalgrim, Tune H. Pers
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0218636

Characterizing the postmortem human bone microbiome from surface-decomposed remains
Cited by: 23
Author(s): Alexandra L. Emmons, Amy Z. Mundorff, Sarah W. Keenan, Jonathan Davoren, Janna M. Andronowski, David Carter, Jennifer M. DeBruyn
Software Mentions: 7
Published: almost 4 years ago

10.1128/mSystems.00811-21

Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Cited by: 4
Author(s): Evgenii I. Olekhnovich, A. B. Ivanov, Vladimir Ulyantsev, Elena Ilina
Software Mentions: 7
Published: over 2 years ago

10.3390/genes10100778

DNA Methylation Markers for Pan-Cancer Prediction by Deep Learning
Cited by: 48
Author(s): Biao Liu, Yulu Liu, Xingxin Pan, Mengyao Li, Shuang Yang, Shuai Cheng Li
Software Mentions: 7
Published: over 4 years ago

10.3389/fnsys.2021.692152

Age-Related Variations in Regional White Matter Volumetry and Microstructure During the Post-adolescence Period: A Cross-Sectional Study of a Cohort of 1,713 University Students
Cited by: 4
Author(s): Ami Tsuchida, Alexandre Laurent, Fabrice Crivello, Laurent Petit, Antonietta Pepe, Naka Beguedou, Stéphanie Debette, Christophe Tzourio, Bernard Mazoyer
Software Mentions: 7
Published: almost 3 years ago

10.1371/journal.pmed.1002699

Deep-learning-assisted diagnosis for knee magnetic resonance imaging: Development and retrospective validation of MRNet
Cited by: 385
Author(s): Nicholas Bien, Pranav Rajpurkar, Robyn L. Ball, Jeremy Irvin, Allison Park, Erik Jones, Michael Bereket, Bhavik N. Patel, Kristen W. Yeom, Katie Shpanskaya, Safwan Halabi, Evan J. Zucker, Gary S. Fanton, Derek F. Amanatullah, Christopher F. Beaulieu, Geoffrey M. Riley, Russell J. Stewart, Francis G. Blankenberg, David B. Larson, Ricky Jones, Curtis P. Langlotz, Andrew Y. Ng, Matthew P. Lungren
Software Mentions: 7
Published: over 5 years ago

10.1016/j.molcel.2020.09.021

Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation Factors
Cited by: 49
Author(s): Stefan Bresson, Vadim Shchepachev, Christos Spanos, Tomasz W. Turowski, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: over 3 years ago

10.18632/oncotarget.27808

Identification of novel prognostic markers of survival time in high-risk neuroblastoma using gene expression profiles
Cited by: 6
Author(s): Abdulazeez Giwa, Azeez Ayomide Fatai, Junaid Gamieldien, Alan Christoffels, Hocine Bendou
Software Mentions: 7
Published: over 3 years ago

10.3389/fninf.2016.00027

CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU Octave
Cited by: 386
Author(s): Nikolaas N. Oosterhof, Andrew C. Connolly, James V. Haxby
Software Mentions: 7
Published: almost 8 years ago

10.3389/fpsyt.2021.680811

TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry
Cited by: 55
Author(s): Stefan Frässle, Eduardo A. Aponte, Saskia Bollmann, Kay H. Brodersen, Ting Cao, Olivia K. Harrison, Sarah M. Harrison, Jakob Heinzle, Sandra Iglesias, Lars Kasper, Ekaterina I. Lomakina, Christoph Mathys, Matthias Müller-Schrader, Inês Pereira, Frederike H. Petzschner, Sudhir Raman, Dario Schöbi, Birte Toussaint, Lilian Weber, Yu Yao, Klaas Enno Stephan
Software Mentions: 7
Published: almost 3 years ago

10.3390/nu11123045

Nutrient Estimation from 24-Hour Food Recalls Using Machine Learning and Database Mapping: A Case Study with Lactose
Cited by: 20
Author(s): Elizabeth Chin, Gabriel Simmons, Yasmine Bouzid, Annie Kan, D. D. Burnett, Ilias Tagkopoulos, Danielle G. Lemay
Software Mentions: 7
Published: over 4 years ago

10.1186/s40168-020-00993-9

PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
Cited by: 61
Author(s): Laura de Nies, Sara Lopes, Susheel Bhanu Busi, Valentina Galata, Anna Heintz‐Buschart, Cédric Christian Laczny, Patrick May, Paul Wilmes
Software Mentions: 7
Published: over 3 years ago

10.3390/s21175740

BioPyC, an Open-Source Python Toolbox for Offline Electroencephalographic and Physiological Signals Classification
Cited by: 5
Author(s): Aurélien Appriou, Léa Pillette, David Trocellier, Dan Dutartre, Andrzej Cichocki, Fabien Lotte
Software Mentions: 7
Published: over 2 years ago

10.3389/fninf.2013.00010

The Virtual Brain: a simulator of primate brain network dynamics
Cited by: 296
Author(s): Paula Sanz-Leon, S. A. Knock, Michael Woodman, Lia Domide, Jochen Mersmann, Anthony R. McIntosh, Viktor K. Jirsa
Software Mentions: 7
Published: over 11 years ago

10.1371/journal.pcbi.1006741

Spatial synchronization codes from coupled rate-phase neurons
Cited by: 19
Author(s): Joseph D. Monaco, Rose M. De Guzman, Hugh T. Blair, Kechen Zhang
Software Mentions: 7
Published: over 5 years ago

10.1016/j.mec.2019.e00089

Impact framework: A python package for writing data analysis workflows to interpret microbial physiology
Cited by: 4
Author(s): Naveen Venayak, Kaushik Raj, Radhakrishnan Mahadevan
Software Mentions: 7
Published: over 4 years ago

10.1126/sciadv.abf7129

Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience
Cited by: 55
Author(s): Luke J. Chang, Eshin Jolly, Jin Hyun Cheong, Kristina M. Rapuano, Nathan Greenstein, Pin-Hao A. Chen, Jeremy R. Manning
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.pcbi.1006269

Evaluating reproducibility of AI algorithms in digital pathology with DAPPER
Cited by: 43
Author(s): Andrea Bizzego, Nicole Bussola, Marco Chierici, Valerio Maggio, Margherita Francescatto, Luca Cima, Marco Cristoforetti, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 7
Published: about 5 years ago

10.1038/s42003-021-02437-y

Neocortical inhibitory interneuron subtypes are differentially attuned to synchrony- and rate-coded information
Cited by: 3
Author(s): Luke Y. Prince, Matthew M Tran, Dorian Grey, Lydia Saad, Helen Chasiotis, Jeehyun Kwag, Michael Köhl, Blake A Richards
Software Mentions: 7
Published: almost 3 years ago

10.1038/s41598-018-22083-5

Chronic helminth infection burden differentially affects haematopoietic cell development while ageing selectively impairs adaptive responses to infection
Cited by: 14
Author(s): Simon A. Babayan, Amy Sinclair, Jessica Duprez, Colin Selman
Software Mentions: 7
Published: about 6 years ago

10.3390/brainsci11060735

Statistical and Machine Learning Link Selection Methods for Brain Functional Networks: Review and Comparison
Cited by: 3
Author(s): Ilinka Ivanoska, Kire Trivodaliev, Slobodan Kalajdziski, Massimiliano Zanin
Software Mentions: 7
Published: almost 3 years ago

10.34133/2020/3729715

Repeated Multiview Imaging for Estimating Seedling Tiller Counts of Wheat Genotypes Using Drones
Cited by: 21
Author(s): Lukas Roth, Moritz Paul Camenzind, Helge Aasen, Lukas Kronenberg, Christoph Barendregt, Karl‐Heinz Camp, Achim Walter, Norbert Kirchgeßner, Andreas Hund
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-019-43125-6

Predicting protein-ligand interactions based on bow-pharmacological space and Bayesian additive regression trees
Cited by: 33
Author(s): Li Li, Ching Chiek Koh, Daniel Reker, J.B. Brown, Haishuai Wang, Nicholas Keone Lee, Hien-haw Liow, Hao Dai, H. K. Fan, Luonan Chen, Dong‐Qing Wei
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-019-52584-w

Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data
Cited by: 8
Author(s): Mikhail Pomaznoy, Ashu Sethi, Jason A. Greenbaum, Bjoern Peters
Software Mentions: 7
Published: over 4 years ago

10.3389/fninf.2017.00044

SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial Scales
Cited by: 13
Author(s): Martin Rueckl, Stephen C. Lenzi, Laura Moreno-Velasquez, Daniel Parthier, Dietmar Schmitz, Sten Ruediger, Friedrich W. Johenning
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12859-021-04126-3

Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources
Cited by: 6
Author(s): Neel Patel, William S. Bush
Software Mentions: 7
Published: about 3 years ago

10.3390/cancers13184710

Virtual Monoenergetic Images of Dual-Energy CT—Impact on Repeatability, Reproducibility, and Classification in Radiomics
Cited by: 10
Author(s): André Euler, Fabian Christopher Laqua, D. Cester, Niklas Lohaus, Thomas Sartoretti, Daniel Pinto dos Santos, Hatem Alkadhi, Bettina Baeßler
Software Mentions: 7
Published: over 2 years ago

10.3389/fninf.2018.00030

Information-Theoretical Analysis of EEG Microstate Sequences in Python
Cited by: 13
Author(s): Frederic von Wegner, Helmut Laufs
Software Mentions: 7
Published: almost 6 years ago

10.1038/s42003-021-01785-z

Temporal hierarchy of intrinsic neural timescales converges with spatial core-periphery organization
Cited by: 42
Author(s): Mehrshad Golesorkhi, Javier Gómez‐Pilar, Shankar Tumati, Maia Fraser, Georg Northoff
Software Mentions: 7
Published: about 3 years ago

10.1186/s13059-020-1945-3

Protein velocity and acceleration from single-cell multiomics experiments
Cited by: 43
Author(s): Gennady Gorin, Valentine Svensson, Lior Pachter
Software Mentions: 7
Published: over 4 years ago

10.1038/s41416-019-0694-0

Development of PancRISK, a urine biomarker-based risk score for stratified screening of pancreatic cancer patients
Cited by: 29
Author(s): Oleg Blyuss, Alexey Zaikin, Valeriia Cherepanova, Daniel Munblit, Elena M. Kiseleva, O. M. Prytomanova, Stephen W. Duffy, Tatjana Crnogorac‐Jurčević
Software Mentions: 7
Published: over 4 years ago

10.1186/s12859-019-2852-z

Differential analysis of combinatorial protein complexes with CompleXChange
Cited by: 4
Author(s): Thorsten Will, Volkhard Helms
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0245157

A comparison of machine learning models versus clinical evaluation for mortality prediction in patients with sepsis
Cited by: 38
Author(s): William P T M van Doorn, Patricia M. Stassen, Hella F. Borggreve, Maaike J. Schalkwijk, Judith Stoffers, Otto Bekers, Steven J.R. Meex
Software Mentions: 6
Published: over 3 years ago

10.1016/j.patter.2021.100213

Appyters: Turning Jupyter Notebooks into data-driven web apps
Cited by: 51
Author(s): Daniel J. B. Clarke, Minji Jeon, Daniel J. Stein, Nicole Moiseyev, Eryk Kropiwnicki, Charles Dai, Zhuorui Xie, Megan L. Wojciechowicz, Skylar Litz, Jason Hom, John Erol Evangelista, Lucas Goldman, Serena Zhang, Christine Yoon, Tahmid Ahamed, Samantha Bhuiyan, Minxuan Cheng, Julie Karam, Kathleen M. Jagodnik, Ingrid Shu, Alexander Lachmann, Sam Ayling, Sherry L. Jenkins, Avi Ma’ayan
Software Mentions: 6
Published: about 3 years ago

10.1007/s10710-018-9328-1

Visualising the global structure of search landscapes: genetic improvement as a case study
Cited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12859-019-3178-6

SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models
Cited by: 8
Author(s): Xiaochuan Wang, Chen Li, Fuyi Li, Varun Sharma, Jiangning Song, Geoffrey I. Webb
Software Mentions: 6
Published: over 4 years ago

10.1534/g3.114.016196

A Multipurpose, High-Throughput Single-Nucleotide Polymorphism Chip for the Dengue and Yellow Fever Mosquito, <i>Aedes aegypti</i>
Cited by: 53
Author(s): Benjamin R. Evans, Andrea Gloria‐Soria, Lin Hou, Carolyn S. McBride, Mariangela Bonizzoni, Hongyu Zhao, Jeffrey R. Powell
Software Mentions: 6
Published: about 9 years ago

10.3390/v12080891

Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity
Cited by: 17
Author(s): Ivana Šimić, Tomaž Mark Zorec, Ivana Lojkić, Nina Krešić, Mario Poljak, Florence Cliquet, Evelyne Picard-Meyer, Marine Wasniewski, Vida Zrnčić, Anđela Čukušić, Tomislav Bedeković
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13059-019-1837-6

DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data
Cited by: 162
Author(s): Cédric Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana X. Garmire
Software Mentions: 6
Published: over 4 years ago

10.3389/fpsyg.2019.02678

Multiple Negative Emotions During Learning With Digital Learning Environments – Evidence on Their Detrimental Effect on Learning From Two Methodological Approaches
Cited by: 17
Author(s): Franz Wortha, Roger Azevedo, Michelle Taub, Susanne Narciss
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0250282

Understanding interactions between risk factors, and assessing the utility of the additive and multiplicative models through simulations
Cited by: 5
Author(s): Lina-Marcela Diaz-Gallo, Boel Brynedal, Helga Westerlind, Rickard Sandberg, Daniel Ramsköld
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0232534

A model for the assessment of bluetongue virus serotype 1 persistence in Spain
Cited by: 8
Author(s): Cecilia Aguilar-Vega, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 6
Published: about 4 years ago

10.1186/s12859-015-0759-x

CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data
Cited by: 36
Author(s): Mark‐Anthony Bray, Anne E. Carpenter
Software Mentions: 6
Published: over 8 years ago

10.3390/genes12071067

Total Genotype Score Modelling of Polygenic Endurance-Power Profiles in Lithuanian Elite Athletes
Cited by: 6
Author(s): Erinija Pranckevičienė, Valentina Ginevičienė, Audronė Jakaitienė, Laimonas Januska, Algirdas Utkus
Software Mentions: 6
Published: almost 3 years ago

10.1007/s11306-020-1640-0

Migrating from partial least squares discriminant analysis to artificial neural networks: a comparison of functionally equivalent visualisation and feature contribution tools using jupyter notebooks
Cited by: 32
Author(s): Kevin Mendez, David Broadhurst, Stacey N. Reinke
Software Mentions: 6
Published: over 4 years ago

10.3389/fninf.2021.689675

Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies
Cited by: 47
Author(s): Alexandre Routier, Ninon Burgos, Mauricio Díaz, Michael Bacci, Simona Bottani, Omar El-Rifai, Sabrina Fontanella, Pietro Gori, Jérémy Guillon, A. Guyot, Ravi Hassanaly, Thomas Jacquemont, Pascal Lu, Arnaud Marcoux, T. Moreau, Jorge Samper‐Gonzàlez, Marc Teichmann, Elina Thibeau–Sutre, Ghislain Vaillant, Junhao Wen, Adam Wild, Marie‐Odile Habert, Stanley Durrleman, Olivier Colliot
Software Mentions: 6
Published: almost 3 years ago

10.3390/molecules26185574

Exploring EZH2-Proteasome Dual-Targeting Drug Discovery through a Computational Strategy to Fight Multiple Myeloma
Cited by: 2
Author(s): Filipe G A Estrada, Silvia Miccoli, Natália Aniceto, Alfonso T. García-Sosa, Rita C. Guedes
Software Mentions: 6
Published: over 2 years ago

10.1371/journal.pgen.1007552

High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a co-reprogramming factor
Cited by: 56
Author(s): Tetsuji Yamashita, Fei Zheng, David Finkelstein, Zoe Kellard, Caroline Robert, Celeste Rosencrance, Ken Sugino, John Easton, Charles Gawad, Jian Zuo
Software Mentions: 6
Published: almost 6 years ago

10.3389/fpls.2021.609684

Transcriptomics of Differential Ripening in ‘d’Anjou’ Pear (Pyrus communis L.)
Cited by: 5
Author(s): Loren Honaas, Heidi Hargarten, John A. Hadish, Stephen P. Ficklin, Sara Serra, Stefano Musacchi, Eric Wafula, James P. Mattheis, Claude W. dePamphilis, David R. Rudell
Software Mentions: 6
Published: almost 3 years ago

10.1186/s12859-020-03739-4

MEIRLOP: improving score-based motif enrichment by incorporating sequence bias covariates
Cited by: 5
Author(s): Nathaniel Delos Santos, Lorane Texari, Christopher Benner
Software Mentions: 6
Published: over 3 years ago

10.1007/s00415-020-09859-4

Posterior circulation stroke: machine learning-based detection of early ischemic changes in acute non-contrast CT scans
Cited by: 12
Author(s): Helge Kniep, Peter Sporns, Gabriel Broocks, André Kemmling, Jawed Nawabi, Thilo Rusche, Jens Fiehler, Uta Hanning
Software Mentions: 6
Published: about 4 years ago

10.1523/JNEUROSCI.2317-20.2021

Disentangling Semantic Composition and Semantic Association in the Left Temporal Lobe
Cited by: 6
Author(s): Jixing Li, Liina Pylkkänen
Software Mentions: 6
Published: almost 3 years ago

10.3389/fninf.2014.00034

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages
Cited by: 45
Author(s): Juan Nunez-Iglesias, Ryan Kennedy, Stephen M. Plaza, Anirban Chakraborty, William T. Katz
Software Mentions: 6
Published: about 10 years ago

10.1186/s12859-021-04339-6

Predicting chemotherapy response using a variational autoencoder approach
Cited by: 7
Author(s): Qi Wei, Stephen A. Ramsey
Software Mentions: 6
Published: over 2 years ago

10.2196/27344

Discovery of Depression-Associated Factors From a Nationwide Population-Based Survey: Epidemiological Study Using Machine Learning and Network Analysis
Cited by: 9
Author(s): Sang Min Nam, Thomas A Peterson, Kyoung Yul Seo, Hyun Wook Han, Jee In Kang
Software Mentions: 6
Published: almost 3 years ago

10.1074/mcp.O117.068122

Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine Learning
Cited by: 23
Author(s): Thomas W. M. Crozier, Michele Tinti, Mark Larance, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 6
Published: over 6 years ago

10.2196/20840

Use of Patient-Reported Symptoms from an Online Symptom Tracking Tool for Dementia Severity Staging: Development and Validation of a Machine Learning Approach
Cited by: 8
Author(s): Aaqib Shehzad, Kenneth Rockwood, Justin Stanley, Taylor Dunn, Susan E. Howlett
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-020-03816-8

Graph embeddings on gene ontology annotations for protein–protein interaction prediction
Cited by: 14
Author(s): Xiaoshi Zhong, Jagath C. Rajapakse
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1008044

Machine Learning based histology phenotyping to investigate the epidemiologic and genetic basis of adipocyte morphology and cardiometabolic traits
Cited by: 15
Author(s): Craig A. Glastonbury, Sara L. Pulit, Julius Honecker, Jenny C Censin, Samantha Laber, Hanieh Yaghootkar, Nilüfer Rahmioğlu, Emilie Pastel, Katarina Kos, Andrew M. Pitt, Michelle Hudson, Christoffer Nellåker, Nicola L. Beer, Hans Hauner, Christian M. Becker, Krina T. Zondervan, Timothy M. Frayling, Melina Claussnitzer, Cecilia M. Lindgren
Software Mentions: 6
Published: almost 4 years ago

10.3389/fninf.2020.00031

Pycabnn: Efficient and Extensible Software to Construct an Anatomical Basis for a Physiologically Realistic Neural Network Model
Cited by: 4
Author(s): Ines Wichert, Sanghun Jee, Erik De Schutter, Sungho Hong
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12864-018-5264-y

Helmsman: fast and efficient mutation signature analysis for massive sequencing datasets
Cited by: 18
Author(s): Jedidiah Carlson, Jun Z. Li, Sebastian Zöllner
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.01296-20

Harnessing Machine Learning To Unravel Protein Degradation in Escherichia coli
Cited by: 16
Author(s): Natan Nagar, Noa Ecker, Gil Loewenthal, Oren Avram, Daniella Ben-Meir, Dvora Biran, Eliora Z. Ron, Tal Pupko
Software Mentions: 6
Published: about 3 years ago

10.7554/eLife.55325

Parallel CRISPR-Cas9 screens clarify impacts of p53 on screen performance
Cited by: 32
Author(s): A. Bowden, David A Morales-Juarez, Matylda Sczaniecka-Clift, Maria Martin Agudo, Natalia Lukashchuk, John Christopher Thomas, Stephen Jackson
Software Mentions: 6
Published: almost 4 years ago

10.1128/mSystems.00016-19

A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Cited by: 255
Author(s): Cameron Martino, James T. Morton, Clarisse Marotz, Luke R. Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler
Software Mentions: 6
Published: about 5 years ago

10.3389/fninf.2017.00021

Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System
Cited by: 8
Author(s): Jonathan Passerat–Palmbach, Romain Reuillon, Mathieu Leclaire, Antonios Makropoulos, Emma C. Robinson, Sarah Parisot, Daniel Rueckert
Software Mentions: 6
Published: about 7 years ago

10.1128/mSystems.00269-18

Calour: an Interactive, Microbe-Centric Analysis Tool
Cited by: 24
Author(s): Zhenjiang Zech Xu, Amir Almasi‐Hashiani, Jon G. Sanders, Quanyin Zhu, James T. Morton, Molly C. Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight
Software Mentions: 6
Published: about 5 years ago

10.1128/mSphere.00455-21

A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition
Cited by: 9
Author(s): Heather L. Deel, Alexandra L. Emmons, Jennifer Kiely, Franklin E. Damann, David Carter, Aaron M. Lynne, Rob Knight, Zhenjiang Xu, Sibyl R. Bucheli, Jessica L. Metcalf
Software Mentions: 6
Published: over 2 years ago

10.1128/mSystems.00145-20

Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens
Cited by: 14
Author(s): Briallen Lobb, Rhiannon Hodgson, Michael D. J. Lynch, Michael J. Mansfield, Jiujun Cheng, Trevor C. Charles, Josh D. Neufeld, Paul M. Craig, Andrew C. Doxey
Software Mentions: 6
Published: about 4 years ago

10.12688/f1000research.11905.2

Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria
Cited by: 5
Author(s): Sereina Riniker, Gregory A. Landrum, Floriane Montanari, Santiago D. Villalba, Julie Maier, Johanna M. Jansen, W. Patrick Walters, Anang A. Shelat
Software Mentions: 6
Published: about 6 years ago

10.1186/s13550-020-00744-9

Repeatability of two semi-automatic artificial intelligence approaches for tumor segmentation in PET
Cited by: 12
Author(s): Elisabeth Pfaehler, Liesbet Mesotten, Gem Kramer, Michiel Thomeer, Karolien Vanhove, Johan de Jong, Peter Adriaensens, Otto S. Hoekstra, Ronald Boellaard
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-019-38979-9

Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers
Cited by: 10
Author(s): Aziz Khan, Xuegong Zhang
Software Mentions: 6
Published: about 5 years ago

10.3390/md17020081

Predicting Blood–Brain Barrier Permeability of Marine-Derived Kinase Inhibitors Using Ensemble Classifiers Reveals Potential Hits for Neurodegenerative Disorders
Cited by: 28
Author(s): Fabien Plisson, Andrew M. Piggott
Software Mentions: 6
Published: over 5 years ago

10.1186/s12874-019-0673-4

Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome framework
Cited by: 7
Author(s): Simon Bussy, Raphaël Veil, Vincent Looten, Anita Burgun, Stéphane Gaı̈ffas, Agathe Guilloux, Brigitte Ranque, Anne‐Sophie Jannot
Software Mentions: 6
Published: about 5 years ago

10.1126/scitranslmed.abi9915

Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infection
Cited by: 176
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 6
Published: almost 3 years ago

10.1155/2021/3774607

Automated Amharic News Categorization Using Deep Learning Models
Cited by: 9
Author(s): Demeke Endalie, Getamesay Haile
Software Mentions: 6
Published: almost 3 years ago

10.1038/s41598-017-15695-w

Objective quantification of nanoscale protein distributions
Cited by: 15
Author(s): Miklos Szoboszlay, Tekla Kirizs, Zoltán Nusser
Software Mentions: 6
Published: over 6 years ago

10.3389/fninf.2014.00022

SCoT: a Python toolbox for EEG source connectivity
Cited by: 21
Author(s): Martin Billinger, Clemens Brunner, Gernot Müller-Putz
Software Mentions: 6
Published: about 10 years ago

10.1186/s12885-021-08617-7

Precision treatment exploration of breast cancer based on heterogeneity analysis of lncRNAs at the single-cell level
Cited by: 3
Author(s): Yan Zhang, Denan Zhang, Qingkang Meng, Ziqi Liu, Hongbo Xie, Lei Liu, Fei Xu, Xiujie Chen
Software Mentions: 6
Published: almost 3 years ago

10.1038/s42003-021-02595-z

Single-cell profiling defines the prognostic benefit of CD39high tissue resident memory CD8+ T cells in luminal-like breast cancer
Cited by: 9
Author(s): Agnese Losurdo, Caterina Scirgolea, Giorgia Alvisi, Jolanda Brummelman, Valentina Errico, Luca Di Tommaso, Karolina Pilipow, Federico Colombo, Bethania Fernandes, Clelia Peano, Alberto Testori, Corrado Tinterri, Massimo Roncalli, Armando Santoro, Emilia Maria Cristina Mazza, Enrico Lugli
Software Mentions: 6
Published: over 2 years ago

10.21203/rs.3.rs-726620/v1

Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation.
Cited by: 27
Author(s): Mericien Venzon, Lucie Bernard-Raichon, Jonathan Klein, Jordan Axelrad, Grant A. Hussey, Alexis Sullivan, Arnau Casanovas‐Massana, María G. Noval, Ana M. Valero-Jimenez, Juan Gago, Evan Wilder, Yale Impact Team, Akiko Iwasaki, Lorna E. Thorpe, Dan R. Littman, Meike Dittmann, Kenneth A. Stapleford, Bo Shopsin, Victor J. Torres, Albert Icksang Ko, Ken Cadwell, Jonas Schluter
Software Mentions: 6
Published: almost 3 years ago

10.1038/s41598-018-29511-6

Metabolomic analysis of mouse prefrontal cortex reveals upregulated analytes during wakefulness compared to sleep
Cited by: 30
Author(s): Allen K. Bourdon, Giovanna Maria Spano, William Marshall, Michele Bellesi, Giulio Tononi, Pier Andrea Serra, Helen A. Baghdoyan, Ralph Lydic, Shawn R. Campagna, Chiara Cirelli
Software Mentions: 6
Published: almost 6 years ago

10.3390/s20205947

A Pattern-Recognition-Based Ensemble Data Imputation Framework for Sensors from Building Energy Systems
Cited by: 7
Author(s): Liang Zhang
Software Mentions: 6
Published: over 3 years ago

10.3390/ijms21197271

LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature Fusion
Cited by: 9
Author(s): Shiyao Feng, Ying Li, Wei Du, Wei Lv, Ying Li
Software Mentions: 6
Published: over 3 years ago

10.1186/s12915-021-01002-7

A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants
Cited by: 12
Author(s): Jean-Philippe Villemin, Claudio Lorenzi, Marie-Sarah Cabrillac, Andrew Oldfield, William Ritchie, Reini F. Luco
Software Mentions: 6
Published: about 3 years ago

10.3390/metabo11040236

Metabolite Profile of Treatment-Naive Metabolic Syndrome Subjects in Relation to Cardiovascular Disease Risk
Cited by: 5
Author(s): Moritz V. Warmbrunn, Annefleur M. Koopen, Nicolien C. de Clercq, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Kasper W. ter Horst, Annick V. Hartstra, Mireille J. Serlie, Mariëtte T. Ackermans, Maarten R. Soeters, Daniël H. van Raalte, Mark Davids, Max Nieuwdorp, Albert K. Groen
Software Mentions: 6
Published: about 3 years ago

10.1186/s12915-021-01086-1

A phenomics approach for antiviral drug discovery
Cited by: 10
Author(s): Jonne Rietdijk, Marianna Tampere, Aleksandra Pettke, Polina Georgiev, Maris Lapins, Ulrika Warpman Berglund, Ola Spjuth, Marjo-Riitta Puumalainen, Jordi Carreras-Puigvert
Software Mentions: 6
Published: almost 3 years ago

10.1186/s13148-021-01029-1

Clinical evaluation of Bladder CARE, a new epigenetic test for bladder cancer detection in urine samples
Cited by: 12
Author(s): Paolo Piatti, Yap Ching Chew, Michiko Suwoto, Taikun Yamada, Benjamin Jara, Xiaoteng Jia, Wei Guo, Saum Ghodoussipour, Siamak Daneshmand, Hamed Ahmadi, Jeffrey M. Rice, Jeffrey M. Bhasin, Faith Holloway, Yvonne Tsai, Yoshitomo Chihara, Gangning Liang
Software Mentions: 6
Published: about 3 years ago

10.1038/s42003-021-01908-6

Population genomics and haplotype analysis in spelt and bread wheat identifies a gene regulating glume color
Cited by: 8
Author(s): Michaël Abrouk, Naveenkumar Athiyannan, Thomas Müller, Yveline Pailles, Christoph Stritt, Anne Roulin, Chenggen Chu, Shuyu Liu, Takumi Morita, Hirokazu Handa, Jesse Poland, Beat Keller, Simon G. Krattinger
Software Mentions: 6
Published: about 3 years ago

10.1007/s00429-021-02358-w

Dissecting whole-brain conduction delays through MRI microstructural measures
Cited by: 6
Author(s): Matteo Mancini, Qiyuan Tian, Qiuyun Fan, Mara Cercignani, Susie Y. Huang
Software Mentions: 6
Published: almost 3 years ago

10.1093/gigascience/giab058

Scalable analysis of multi-modal biomedical data
Cited by: 3
Author(s): Jaclyn Smith, Yao Shi, Michael Benedikt, Miloš Nikolić
Software Mentions: 6
Published: over 2 years ago

Projects: pypi: scikit-learn

Papers Mentioning scikit-learn 2,431