Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-03739-4

https://doi.org/10.1186/s12859-020-03739-4

MEIRLOP: improving score-based motif enrichment by incorporating sequence bias covariates

Cited by: 5
Author(s): Nathaniel Delos Santos, Lorane Texari, Christopher Benner
Published: about 4 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: pl
UNKNOWN
Papers that mentioned: 99
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431