Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00269-18

https://doi.org/10.1128/mSystems.00269-18

Calour: an Interactive, Microbe-Centric Analysis Tool

Cited by: 24
Author(s): Zhenjiang Zech Xu, Amir Almasi‐Hashiani, Jon G. Sanders, Quanyin Zhu, James T. Morton, Molly C. Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight
Published: almost 6 years ago

Software Mentions 6

pypi: numpy

Fundamental package for array computing in Python
Papers that mentioned: 832

pypi: pandas

Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640

pypi: scikit-bio

Data structures, algorithms and educational resources for bioinformatics.
Papers that mentioned: 41

pypi: scikit-learn

A set of python modules for machine learning and data mining
Papers that mentioned: 2,431

pypi: scipy

Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071

pypi: STAMP

A graphical software package for analyzing taxonomic and functional profiles.
Papers that mentioned: 1,190