Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.immuni.2019.01.001

https://doi.org/10.1016/j.immuni.2019.01.001

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation

Cited by: 322
Author(s): Ricardo J. Miragaia, Tomás Gomes, Agnieszka Chomka, Laura Jardine, Angela Riedel, Ahmed N. Hegazy, Natasha Whibley, A. Tucci, Xi Chen, Ida Lindeman, Guy Emerton, Thomas Krausgruber, Jacqueline D. Shields, Muzlifah Haniffa, Fiona Powrie, Sarah A. Teichmann
Published: almost 6 years ago

Software Mentions 6

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: switchde
Switch-like differential expression across single-cell trajectories
Papers that mentioned: 5
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: GPy
The Gaussian Process Toolbox
Papers that mentioned: 29
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
pypi: velocyto
RNA velocity analysis for single cell RNA-seq data
Papers that mentioned: 25