Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: switchde

https://packages.ecosyste.ms/registries/bioconductor.org/packages/switchde

Switch-like differential expression across single-cell trajectories
1 version
Latest release: about 1 year ago
9,391 downloads total

Papers Mentioning switchde 5

10.1016/j.immuni.2019.01.001

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation
Cited by: 322
Author(s): Ricardo J. Miragaia, Tomás Gomes, Agnieszka Chomka, Laura Jardine, Angela Riedel, Ahmed N. Hegazy, Natasha Whibley, A. Tucci, Xi Chen, Ida Lindeman, Guy Emerton, Thomas Krausgruber, Jacqueline D. Shields, Muzlifah Haniffa, Fiona Powrie, Sarah A. Teichmann
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pcbi.1005212

Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference
Cited by: 60
Author(s): Kieran R Campbell, Christopher Yau
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pcbi.1008133

A novel single-cell based method for breast cancer prognosis
Cited by: 14
Author(s): Xiaomei Li, Lin Liu, Gregory J. Goodall, Andreas W. Schreiber, Taosheng Xu, Jiuyong Li, Thuc Duy Le
Software Mentions: 3
Published: about 4 years ago

10.1016/j.stem.2018.10.023

Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes
Cited by: 111
Author(s): Charmaine Lang, Kieran R Campbell, Brent J. Ryan, Phillippa J. Carling, Moustafa Attar, Jane Vowles, Olga V. Perestenko, Rory Bowden, Fahd Baig, Meike Kasten, Michele T.M. Hu, Sally A. Cowley, Caleb Webber, Richard Wade‐Martins
Software Mentions: 3
Published: almost 6 years ago

10.1093/bioinformatics/btw798

switchde: inference of switch-like differential expression along single-cell trajectories
Cited by: 27
Author(s): Kieran R Campbell, Christopher Yau
Software Mentions: 1
Published: almost 8 years ago