Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: switchde
https://packages.ecosyste.ms/registries/bioconductor.org/packages/switchde
Switch-like differential expression across single-cell trajectories
1 version
Latest release: 10 months ago
9,391 downloads total
Papers Mentioning switchde 5
10.1016/j.immuni.2019.01.001
Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue AdaptationCited by: 322
Author(s): Ricardo J. Miragaia, Tomás Gomes, Agnieszka Chomka, Laura Jardine, Angela Riedel, Ahmed N. Hegazy, Natasha Whibley, A. Tucci, Xi Chen, Ida Lindeman, Guy Emerton, Thomas Krausgruber, Jacqueline D. Shields, Muzlifah Haniffa, Fiona Powrie, Sarah A. Teichmann
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pcbi.1005212
Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime InferenceCited by: 60
Author(s): Kieran R Campbell, Christopher Yau
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pcbi.1008133
A novel single-cell based method for breast cancer prognosisCited by: 14
Author(s): Xiaomei Li, Lin Liu, Gregory J. Goodall, Andreas W. Schreiber, Taosheng Xu, Jiuyong Li, Thuc Duy Le
Software Mentions: 3
Published: almost 4 years ago
10.1016/j.stem.2018.10.023
Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell PhenotypesCited by: 111
Author(s): Charmaine Lang, Kieran R Campbell, Brent J. Ryan, Phillippa J. Carling, Moustafa Attar, Jane Vowles, Olga V. Perestenko, Rory Bowden, Fahd Baig, Meike Kasten, Michele T.M. Hu, Sally A. Cowley, Caleb Webber, Richard Wade‐Martins
Software Mentions: 3
Published: over 5 years ago
10.1093/bioinformatics/btw798
switchde: inference of switch-like differential expression along single-cell trajectoriesCited by: 27
Author(s): Kieran R Campbell, Christopher Yau
Software Mentions: 1
Published: over 7 years ago