Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: GSVA
https://packages.ecosyste.ms/registries/pypi.org/packages/GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
7 versions
Latest release: almost 6 years ago
41 downloads last month
Papers Mentioning GSVA 893
10.1186/s12920-021-01081-z
Identification and validation of a novel immune-related signature associated with macrophages and CD8 T cell infiltration predicting overall survival for hepatocellular carcinomaCited by: 2
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 7
Published: over 2 years ago
10.18632/aging.102506
Reactive oxygen species metabolism-based prediction model and drug for patients with recurrent glioblastomaCited by: 7
Author(s): Nian Tan, Jianwei Liu, Ping Li, Zhaohao Sun, Jianming Pan, Wei Zhao
Software Mentions: 7
Published: over 4 years ago
10.7717/peerj.11894
Identification of a circRNA-miRNA-mRNA regulatory network for exploring novel therapeutic options for gliomaCited by: 4
Author(s): Yi He, Yihong Chen, Yuxin Tong, Wenyong Long, Qing Liu
Software Mentions: 7
Published: almost 3 years ago
10.3389/fgene.2019.00185
Myometrial Transcriptional Signatures of Human ParturitionCited by: 36
Author(s): Zachary Stanfield, Pei F. Lai, Kaiyu Lei, Mark R. Johnson, Andrew M. Blanks, Roberto Romero, Mark R. Chance, Sam Mesiano, Mehmet Koyutürk
Software Mentions: 7
Published: about 5 years ago
10.18632/aging.104116
Integrated analysis of a competing endogenous RNA network reveals an 11-lncRNA prognostic signature in ovarian cancerCited by: 3
Author(s): Yongjian Zhang, Hu Zhou, Mei‐Yin Zhang, Linan Xing, Chang Yang, Bairong Xia, Ge Lou
Software Mentions: 7
Published: over 3 years ago
10.3389/fmolb.2020.562441
Novel Molecular Subtypes Associated With 5mC Methylation and Their Role in Hepatocellular Carcinoma ImmunotherapyCited by: 12
Author(s): Zhuomao Mo, Zhirui Cao, Shaoju Luo, Yan Chen, Shijun Zhang
Software Mentions: 7
Published: over 3 years ago
10.18632/aging.103779
Development and validation of an immune and stromal prognostic signature in uveal melanoma to guide clinical therapyCited by: 5
Author(s): Qianwen Gong, Qi Wan, Anqi Li, Yubin Yu, Xiangyu Ding, Lin Leng, Xiao-Liang Qi, Liang Hu
Software Mentions: 7
Published: over 3 years ago
10.3389/pore.2021.1609825
Clinical Value of TXNDC12 Combined With IDH and 1p19q as Biomarkers for Prognosis of GliomaCited by: 4
Author(s): Xinzhuang Wang, Quan Yang, Nan Liu, Qilong Bian, Ming Gao, Xu Hou
Software Mentions: 7
Published: over 2 years ago
10.3389/fonc.2021.734873
DNA Methylation Regulator-Meditated Modification Patterns Define the Distinct Tumor Microenvironment in Lung AdenocarcinomaCited by: 3
Author(s): Dejian Yuan, Zehong Wei, Yicheng Wang, Cheng Fang, Yujie Zeng, Yang Li, Shangyu Zhang, Jianbo Li, Renkuan Tang
Software Mentions: 7
Published: over 2 years ago
10.1016/j.virol.2021.03.019
Zika virus infection during pregnancy protects against secondary infection in the absence of CD8+ cellsCited by: 3
Author(s): Blake Schouest, Brandon J Beddingfield, Margaret H. Gilbert, Rudolf P. Bohm, Faith Schiro, Pyone P. Aye, Antonito T. Panganiban, Diogo M. Magnani, Nicholas J. Maness
Software Mentions: 7
Published: almost 3 years ago
10.1186/s12864-017-4167-7
SaVanT: a web-based tool for the sample-level visualization of molecular signatures in gene expression profilesCited by: 30
Author(s): David Lopez, Dennis Montoya, Michael Ambrose, Larry Lam, Leah Briscoe, Claire Adams, Robert L. Modlin, Matteo Pellegrini
Software Mentions: 7
Published: over 6 years ago
10.12688/f1000research.18490.3
Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing dataCited by: 38
Author(s): J. Javier Díaz-Mejía, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris
Software Mentions: 7
Published: over 4 years ago
10.1186/s12864-016-3317-7
A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic dataCited by: 32
Author(s): Yongli Hu, Takeshi Hase, Hui Peng Li, Shyam Prabhakar, Hiroaki Kitano, See Ket Ng, Samik Ghosh, Lionel Wee
Software Mentions: 7
Published: over 7 years ago
10.1111/jcmm.15877
RAD51AP1 promotes progression of ovarian cancer via TGF‐β/Smad signalling pathwayCited by: 17
Author(s): Hongyu Zhao, Yan Gao, Qi Chen, Jie Li, Meng Ren, Xiaoting Zhao, Wentao Yue
Software Mentions: 7
Published: over 3 years ago
10.3389/fgene.2021.684002
Regulation of Long Non-coding RNA KCNQ1OT1 Network in Colorectal Cancer ImmunityCited by: 5
Author(s): Junjie Liu, Wei Lv, Shuling Li, Jingwen Deng
Software Mentions: 7
Published: over 2 years ago
10.3389/fgene.2020.590660
Identification of Key Genes and Potential New Biomarkers for Ovarian Aging: A Study Based on RNA-Sequencing DataCited by: 14
Author(s): Lingwei Ma, Huan Lu, Runhua Chen, Meng Wu, Yan Jin, Jinjin Zhang, Shixuan Wang
Software Mentions: 7
Published: over 3 years ago
10.3389/fimmu.2021.672158
Analysis of Tumor Microenvironment Characteristics in Bladder Cancer: Implications for Immune Checkpoint Inhibitor TherapyCited by: 21
Author(s): Xingyu Chen, Haotian Chen, Dong He, Ying Cheng, Yuxing Zhu, Mengqing Xiao, Hua Lan, Zhanwang Wang, Ke Cao
Software Mentions: 7
Published: about 3 years ago
10.3390/e22040427
Fifteen Years of Gene Set Analysis for High-Throughput Genomic Data: A Review of Statistical Approaches and Future ChallengesCited by: 30
Author(s): Das S, Craig J. McClain, N. Shesh
Software Mentions: 7
Published: about 4 years ago
10.1186/s12967-020-02697-y
A novel immune classification reveals distinct immune escape mechanism and genomic alterations: implications for immunotherapy in hepatocellular carcinomaCited by: 58
Author(s): Zaoqu Liu, Yuyuan Zhang, Chengcheng Shi, Xueliang Zhou, Kaihao Xu, Dechao Jiao, Zhenqiang Sun, Xinwei Han
Software Mentions: 7
Published: over 3 years ago
10.3389/fonc.2020.573800
Molecular and Clinical Characterization of a Novel Prognostic and Immunologic Biomarker FAM111A in Diffuse Lower-Grade GliomaCited by: 8
Author(s): Xiaoshuai Ji, Feng Ding, Jiajia Gao, Xiaoming Huang, Wenqing Liu, Yunda Wang, Qian Liu, Tao Xin
Software Mentions: 7
Published: over 3 years ago
10.3389/fimmu.2021.653836
Identification of Prognostic Genes in the Tumor Microenvironment of Hepatocellular CarcinomaCited by: 41
Author(s): Shixin Xiang, Jing Li, Jing Shen, Yueshui Zhao, Xu Wu, Mingxing Li, Yang Xiao-mi, Parham Jabbarzadeh Kaboli, Fukuan Du, Yan Zheng, Qinglian Wen, Chi Hin Cho, Tao Yi, Zhangang Xiao
Software Mentions: 7
Published: about 3 years ago
10.3389/fimmu.2021.691811
Immune Infiltrating Cells-Derived Risk Signature Based on Large-scale Analysis Defines Immune Landscape and Predicts Immunotherapy Responses in Glioma Tumor MicroenvironmentCited by: 36
Author(s): Nan Zhang, Hao Zhang, Zeyu Wang, Ziyu Dai, Xun Zhang, Quan Cheng, Zhixiong Liu
Software Mentions: 7
Published: almost 3 years ago
10.3389/fimmu.2020.580934
Redox Regulator GLRX Is Associated With Tumor Immunity in GliomaCited by: 14
Author(s): Yuanhao Chang, Guanzhang Li, You Zhai, Lijie Huang, Yuemei Feng, Di Wang, Wei Zhang, Huimin Hu
Software Mentions: 7
Published: over 3 years ago
10.3389/fimmu.2021.656541
The Predictive Value of Monocytes in Immune Microenvironment and Prognosis of Glioma Patients Based on Machine LearningCited by: 32
Author(s): Nan Zhang, Ziyu Dai, Wantao Wu, Zeyu Wang, Hui Cao, Yakun Zhang, Zhanchao Wang, Hao Zhang, Quan Cheng
Software Mentions: 7
Published: about 3 years ago
10.3389/fcell.2021.659294
Ubiquitin Modification Patterns of Clear Cell Renal Cell Carcinoma and the Ubiquitin Score to Aid Immunotherapy and Targeted TherapyCited by: 5
Author(s): Peng Zhou, Yuchao Lu, Xiufen Yang, Jin‐Zhou Xu, Chen‐Qian Liu, Qi‐Dong Xia, Junlin Lu, Shaogang Wang, Jia Hu
Software Mentions: 7
Published: about 3 years ago
10.3390/ijms22094917
The Cellular Composition of Bovine Coccygeal Intervertebral Discs: A Comprehensive Single-Cell RNAseq AnalysisCited by: 24
Author(s): Martina Caliò, Benjamin Gantenbein, Marcel Egli, Lucy Poveda, Fabian Ille
Software Mentions: 7
Published: about 3 years ago
10.18632/aging.202417
Overexpression of TICRR and PPIF confer poor prognosis in endometrial cancer identified by gene co-expression network analysisCited by: 13
Author(s): Linlin Yang, Yunxia Cui, Xiao Sun, Yudong Wang
Software Mentions: 7
Published: over 3 years ago
10.3390/ijms19102903
Identification of a Prognostic Hypoxia-Associated Gene Set in IDH-Mutant GliomaCited by: 27
Author(s): Philip Dao Trong, Saskia Rösch, Heimo Mairbäurl, Stefan Pusch, Andreas Unterberg, Christel Herold‐Mende, Rolf Warta
Software Mentions: 7
Published: over 5 years ago
10.1186/s12935-021-02212-3
Midkine promotes glioblastoma progression via PI3K-Akt signalingCited by: 14
Author(s): Beiquan Hu, Chao Qin, Li Li, Lei Wei, Xianlun Mo, Huasheng Fan, Yuanhua Lei, Feng Wang, Donghua Zou
Software Mentions: 7
Published: over 2 years ago
10.3389/fmolb.2021.705008
CUX1 Facilitates the Development of Oncogenic Properties Via Activating Wnt/β-Catenin Signaling Pathway in GliomaCited by: 2
Author(s): Fang Fěng, Zongqing Zhao, Yunfei Zhou, Yalin Cheng, Xiujie Wu, Xueyuan Heng
Software Mentions: 7
Published: almost 3 years ago
10.3389/fonc.2021.698278
A Focal Adhesion-Related Gene Signature Predicts Prognosis in Glioma and Correlates With Radiation Response and Immune MicroenvironmentCited by: 7
Author(s): Haonan Li, Guohui Wang, Wenyan Wang, Jie Pan, Huandi Zhou, Xuetao Han, Linlin Su, Zhenghui Ma, Liubing Hou, Xiaoying Xue
Software Mentions: 7
Published: over 2 years ago
10.1186/s12935-021-02154-w
Study of cellular heterogeneity and differential dynamics of autophagy in human embryonic kidney development by single-cell RNA sequencingCited by: 2
Author(s): Wenjin Chen, Xiuwu Pan, Jian Chu, Da Xu, Jia-Xin Chen, Weijie Chen, Linhui Wang, Xingang Cui
Software Mentions: 7
Published: over 2 years ago
10.1186/s12859-018-2435-4
Single sample scoring of molecular phenotypesCited by: 230
Author(s): Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis
Software Mentions: 7
Published: over 5 years ago
10.3389/fimmu.2021.617163
The Changes of Leukocytes in Brain and Blood After Intracerebral HemorrhageCited by: 14
Author(s): Shuhao Mei, Yijie Shao, Yuanjian Fang, Jianing Lu, Jingwei Zheng, Shenbin Xu, Haijian Wu, Zeyu Sun, Jun Yu, Sheng Chen, Zhen Wang, Jianmin Zhang
Software Mentions: 7
Published: over 3 years ago
10.3389/fcell.2021.668810
Novel Molecular Subtypes and Related Score Based on Histone Acetylation Modification in Renal Clear Cell CarcinomaCited by: 3
Author(s): Qianqian Wang, Ting Xiang, Ling Yu, Junping Wen, Fang Liu, Dong Yang, Wei Wu, Ling Hu
Software Mentions: 7
Published: over 2 years ago
10.1155/2021/1801873
Identification of Key Functional Modules and Immunomodulatory Regulators of Hepatocellular CarcinomaCited by: 2
Author(s): Dan Luo, Xiang Zhang, Xiaokai Li, Gang Chen
Software Mentions: 7
Published: almost 3 years ago
10.1186/s12935-019-1028-2
Expression profile analysis identifies IER3 to predict overall survival and promote lymph node metastasis in tongue cancerCited by: 10
Author(s): Fang Xiao, Yinhua Dai, Yujiao Hu, Mengmeng Lu, Qun Dai
Software Mentions: 7
Published: over 4 years ago
10.20892/j.issn.2095-3941.2020.0402
The m6A methylation landscape stratifies hepatocellular carcinoma into 3 subtypes with distinct metabolic characteristicsCited by: 17
Author(s): Xiaotian Shen, Beiyuan Hu, Jing Xu, Wei Qin, Yan Fu, Shun Wang, Qiongzhu Dong, Lun–Xiu Qin
Software Mentions: 7
Published: over 4 years ago
10.1155/2021/8323487
LncRNA ELF3-AS1 is a Prognostic Biomarker and Correlated with Immune Infiltrates in Hepatocellular CarcinomaCited by: 14
Author(s): Tianming Chen, Changhao Zhu, Xing Wang, Yaozhen Pan
Software Mentions: 7
Published: almost 3 years ago
10.1515/tnsci-2021-0002
<i>IKBIP</i> is a novel EMT-related biomarker and predicts poor survival in gliomaCited by: 9
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Aijun Shan
Software Mentions: 7
Published: over 3 years ago
10.1186/s13287-020-01823-3
Multiomics global landscape of stemness-related gene clusters in adipose-derived mesenchymal stem cellsCited by: 8
Author(s): Guan-Ming Lu, Yong-Xian Rong, Zheng Liang, Dong-Lin Hunag, Yuju Ma, Zhizhai Luo, Fengyao Wu, Xinheng Liu, Yu Liu, Steven Mo, Zhongquan Qi, Hong-Mian Li
Software Mentions: 7
Published: almost 4 years ago
10.7150/thno.52717
m<sup>6</sup>A regulator-based methylation modification patterns characterized by distinct tumor microenvironment immune profiles in colon cancerCited by: 135
Author(s): Wei Chong, Liang Shang, Jin Liu, Zhen Fang, Fengying Du, Hao Wu, Liu Yang, Zhe Wang, Chen Yang, Shengtao Jia, Liming Chen, Leping Li, Hao Chen
Software Mentions: 7
Published: over 3 years ago
10.3389/fcell.2021.682261
Immunity-Related Gene Signature Identifies Subtypes Benefitting From Adjuvant Chemotherapy or Potentially Responding to PD1/PD-L1 Blockage in Pancreatic CancerCited by: 3
Author(s): Qian Hao, Hongzhe Li, Junjie Xie, Xiang Lü, Fanlu Li, Weishen Wang, Xiaomei Tang, Minmin Shi, Longyang Jiang, Hongwei Li, Hao Chen, Chenghong Peng, Zhiwei Xu, Xiaxing Deng, Baiyong Shen
Software Mentions: 7
Published: almost 3 years ago
10.1186/s12859-017-1711-z
GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profilesCited by: 8
Author(s): Michael Klein, David F. Stern, Hongyu Zhao
Software Mentions: 7
Published: almost 7 years ago
10.1007/s10549-019-05135-w
A high-risk luminal A dominant breast cancer subtype with increased mobilityCited by: 21
Author(s): Liping Guo, Guoji Chen, Wen Zhang, Lülin Zhou, Ting Xiao, Di Xia, Yipeng Wang, Feng Li, Kaitai Zhang
Software Mentions: 7
Published: about 5 years ago
10.3389/fcell.2021.651593
An Immune-Related Long Non-Coding RNA Signature to Predict the Prognosis of Ewing’s Sarcoma Based on a Machine Learning Iterative Lasso RegressionCited by: 4
Author(s): Enhui Ren, Yajun Deng, Wenhua Yuan, Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Qiqi Xie
Software Mentions: 7
Published: almost 3 years ago
10.1002/ctm2.500
Single‐cell transcriptomes reveal heterogeneity of high‐grade serous ovarian carcinomaCited by: 29
Author(s): Qian Hao, Jiajia Li, Qinghua Zhang, Fei Xu, Bangxiang Xie, Hua Lu, Xiaohua Wu, Xiang Zhou
Software Mentions: 7
Published: almost 3 years ago
10.3389/fcell.2021.665364
Hypoxia Constructing the Prognostic Model of Colorectal Adenocarcinoma and Related to the Immune MicroenvironmentCited by: 11
Author(s): Yuanyuan Zhang, Feng Yang, Xiaohong Peng, Xiaoyü Li, Na Luo, Wenjun Zhu, Min Fu, Qianxia Li, Guangyuan Hu
Software Mentions: 7
Published: about 3 years ago
10.1038/s41598-019-53843-6
Monocytes affect bone mineral density in pre- and postmenopausal women through ribonucleoprotein complex biogenesis by integrative bioinformatics analysisCited by: 8
Author(s): Kang-Wen Xiao, Jiali Li, Zhao-Yi Zeng, Zhibo Liu, Zhiqiang Hou, Xin Yan, Lin Cai
Software Mentions: 7
Published: over 4 years ago
10.1002/cti2.1173
Systematic analysis of the transcriptome in small‐cell carcinoma of the oesophagus reveals its immune microenvironmentCited by: 2
Author(s): Qi Zhao, Yan‐Xing Chen, Qi‐Nian Wu, Chao Zhang, Min Liu, Yingnan Wang, Yan Feng, Jiajia Hu, Jianhua Fu, Hong Yang, Jingjing Qi, Zixian Wang, Yong Lu, Hui Sheng, Zexian Liu, Zhixiang Zuo, Jian Zheng, Jing‐Ping Yun, Jin‐Xin Bei, Wei‐Hua Jia, Dong Lin, Rui‐Hua Xu, Feng Wang
Software Mentions: 7
Published: over 4 years ago
10.1038/s41598-019-42784-9
Transcriptomic profiles conducive to immune-mediated tumor rejection in human breast cancer skin metastases treated with ImiquimodCited by: 23
Author(s): Mariya Rozenblit, Wouter Hendrickx, Adriana Heguy, Luis Chiriboga, Cynthia A. Loomis, Karina Ray, Farbod Darvishian, Mikala Egeblad, Sandra Demaria, Francesco M. Marincola, Davide Bedognetti, Sylvia Adams
Software Mentions: 7
Published: almost 5 years ago
10.3389/fgene.2021.722992
A Coagulation-Related Gene-Based Prognostic Model for Invasive Ductal CarcinomaCited by: 11
Author(s): Jing Li, Jiang Du, Yanhong Wang, Hong-Ti Jia
Software Mentions: 7
Published: over 2 years ago
10.1038/s41598-019-45989-0
Machine learning approaches to predict lupus disease activity from gene expression dataCited by: 48
Author(s): Brian Kegerreis, Michelle D. Catalina, Prathyusha Bachali, Nicholas S. Geraci, Adam C. Labonte, Chen Zeng, Nathaniel Stearrett, Keith A. Crandall, Peter E. Lipsky, Amrie C. Grammer
Software Mentions: 7
Published: almost 5 years ago
10.1111/jcmm.16327
Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancerCited by: 13
Author(s): Zhenan Bao, Xiaocui Nie, Xinxin Miao, Shengke Wang, Jing Li
Software Mentions: 7
Published: over 3 years ago
10.1111/jcmm.16321
Characterization of an endoplasmic reticulum stress‐related signature to evaluate immune features and predict prognosis in gliomaCited by: 29
Author(s): Qing Zhang, Gefei Guan, Cheng Peng, Wen Cheng, Lianhe Yang, Anhua Wu
Software Mentions: 7
Published: about 3 years ago
10.21203/rs.3.rs-131380/v2
Age-dependent pathogenic characteristics of SARS-CoV-2 infection in ferretsCited by: 3
Author(s): Young Il Kim, Kwang-Min Yu, June-Young Koh, Eunha Kim, Se‐Mi Kim, Young Ho Kim, Mark Anthony B. Casel, Rare Rollon, Seung-Gyu Jang, Min‐Suk Song, Su‐Jin Park, Hye Won Jeong, Eung‐Gook Kim, Ok-Jun Lee, Younho Choi, Shin-Ae Lee, Su–Hyung Park, Jae U. Jung, Young Ki Choi
Software Mentions: 7
Published: about 3 years ago
10.3390/cancers13071730
Identification and Validation of an Immune-Associated RNA-Binding Proteins Signature to Predict Clinical Outcomes and Therapeutic Responses in Glioma PatientsCited by: 11
Author(s): Ruotong Tian, Yimin Li, Qian Liu, Minfeng Shu
Software Mentions: 7
Published: about 3 years ago
10.3389/fcell.2021.673827
Expression of Lipid-Metabolism Genes Is Correlated With Immune Microenvironment and Predicts Prognosis in OsteosarcomaCited by: 33
Author(s): Qian-Nan Hu, Ting Lei, Yihe Hu, Pengfei Lei
Software Mentions: 7
Published: about 3 years ago
10.3389/fonc.2020.542140
Identification of Immune-Related lncRNA Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder CancerCited by: 19
Author(s): Lianghao Zhang, Long‐Qing Li, Yonghao Zhan, Jian‐Ge Wang, Zhaowei Zhu, Xuepei Zhang
Software Mentions: 7
Published: over 3 years ago
10.3389/fonc.2021.636565
Identification and Development of Subtypes With Poor Prognosis in Pan-Gynecological Cancer Based on Gene Expression in the Glycolysis-Cholesterol Synthesis AxisCited by: 6
Author(s): Guangwei Wang, Xiaofei Liu, Dandan Wang, Meige Sun, Qing Yang
Software Mentions: 7
Published: about 3 years ago
10.3389/fonc.2021.592211
An Immune-Related Gene Pairs Signature Predicts Prognosis and Immune Heterogeneity in GlioblastomaCited by: 1
Author(s): Nijia Zhang, Ming Ge, Tao Jiang, Xiaoxia Peng, Hailang Sun, Qi Xiang, Zhewei Zou, Dapeng Li
Software Mentions: 6
Published: about 3 years ago
10.1111/jcmm.14999
A stroma‐related lncRNA panel for predicting recurrence and adjuvant chemotherapy benefit in patients with early‐stage colon cancerCited by: 13
Author(s): Rui Zhou, Huiying Sun, Songbai Zheng, Jingwen Zhang, Dongqiang Zeng, Jianhua Wu, Zhenhua Huang, Xiaoxiang Rong, Jianping Bin, Yulin Liao, Min Shi, Wangjun Liao
Software Mentions: 6
Published: over 4 years ago
10.1155/2021/2769689
Identification and Verification of Molecular Subtypes with Enhanced Immune Infiltration Based on m6A Regulators in Cutaneous MelanomaCited by: 11
Author(s): Yitong Lin, Shu Wang, Shirui Liu, Sha Lv, Huayang Wang, Fuqiu Li
Software Mentions: 6
Published: over 3 years ago
10.18632/aging.202393
The landscape of alternative splicing reveals novel events associated with tumorigenesis and the immune microenvironment in gastric cancerCited by: 2
Author(s): Shenghan Lou, Jian Zhang, Zhao Zhai, Xin Yin, Yimin Wang, Tianyi Fang, Yingwei Xue
Software Mentions: 6
Published: over 3 years ago
10.1111/jcmm.14938
A risk signature with four autophagy‐related genes for predicting survival of glioblastoma multiformeCited by: 47
Author(s): Yulin Wang, Wenjin Zhao, Zhe Xiao, Gefei Guan, Xin Liu, Minghua Zhuang
Software Mentions: 6
Published: over 4 years ago
10.3389/fcell.2021.686909
Multi-Omics Data Integration Analysis of an Immune-Related Gene Signature in LGG Patients With EpilepsyCited by: 13
Author(s): Quan Cheng, Weiwei Duan, Shiqing He, Chen Li, Hui Cao, Kun Liu, Weijie Ye, Bo Yuan, Zhiwei Xia
Software Mentions: 6
Published: almost 3 years ago
10.18632/aging.202186
Systematic construction and validation of an epithelial–mesenchymal transition risk model to predict prognosis of lung adenocarcinomaCited by: 10
Author(s): Yunliang Tang, Yanxia Jiang, Qi Cheng, Jiao Wang, Zhenguo Zeng
Software Mentions: 6
Published: over 3 years ago
10.3389/fgene.2021.639254
Identification and Validation of a Novel Immune-Related Four-lncRNA Signature for Lung AdenocarcinomaCited by: 14
Author(s): Jixin Wang, Xiangjun Yin, Yin‐Qiang Zhang, Xuming Ji
Software Mentions: 6
Published: about 3 years ago
10.1172/jci.insight.140380
Patient ancestry significantly contributes to molecular heterogeneity of systemic lupus erythematosusCited by: 41
Author(s): Michelle D. Catalina, Prathyusha Bachali, Anthony E. T. Yeo, Nicholas S. Geraci, Michelle Petri, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 6
Published: almost 4 years ago
10.3389/fgene.2021.678747
Identification of CXCL10-Relevant Tumor Microenvironment Characterization and Clinical Outcome in Ovarian CancerCited by: 5
Author(s): Jing Jin, Yang Li, Tobias Achu Muluh, Liangke Zhi, Qijie Zhao
Software Mentions: 6
Published: almost 3 years ago
10.1371/journal.pone.0208132
Identification of alterations in macrophage activation associated with disease activity in systemic lupus erythematosusCited by: 67
Author(s): Adam C. Labonte, Brian Kegerreis, Nicholas S. Geraci, Prathyusha Bachali, Sushma Madamanchi, Robert Robl, Michelle D. Catalina, Peter E. Lipsky, Amrie C. Grammer
Software Mentions: 6
Published: over 5 years ago
10.3389/fonc.2021.685065
Comprehensive Landscape of Ovarian Cancer Immune Microenvironment Based on Integrated Multi-Omics AnalysisCited by: 4
Author(s): Jiacheng Shen, Tingwei Liu, Qiaoli Bei, Shaohua Xu
Software Mentions: 6
Published: almost 3 years ago
10.1371/journal.pone.0164542
IGSA: Individual Gene Sets Analysis, including Enrichment and ClusteringCited by: 3
Author(s): Lingxiang Wu, Xiujie Chen, Denan Zhang, Wubing Zhang, Lei Liu, Hongzhe Ma, Jingbo Yang, Hongbo Xie, Bo Liu, Qing Jin
Software Mentions: 6
Published: over 7 years ago
10.1172/jci.insight.150861
Key molecular alterations in endothelial cells in human glioblastoma uncovered through single-cell RNA sequencingCited by: 48
Author(s): Yuan Xie, Liqun He, Roberta Lugano, Yanyu Zhang, Haiyan Cao, Qiyuan He, Min Chao, Boxuan Liu, Qingze Cao, Jianhao Wang, Yang Jiao, Yibo Hu, Liying Han, Yong Zhang, Hua Huang, Lene Uhrbom, Christer Betsholtz, Liang Wang, Anna Dimberg, Lei Zhang
Software Mentions: 6
Published: almost 3 years ago
10.3389/fmolb.2021.644557
Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung AdenocarcinomaCited by: 8
Author(s): Jiakang Ma, Xinhua Lin, Xueting Wang, Qing-Qing Min, Tonglian Wang, Chaozhi Tang
Software Mentions: 6
Published: about 3 years ago
10.1155/2020/8182358
Two Gene Set Variation Index as Biomarker of Bacterial and Fungal SepsisCited by: 4
Author(s): Xiaowen Zheng, Yifeng Luo, Qian Li, Jihua Feng, Chunling Zhao, Junyu Lu, Jiefeng Luo, Jianfeng Zhang
Software Mentions: 6
Published: almost 4 years ago
10.1186/s13073-021-00931-w
Multi-site tumor sampling highlights molecular intra-tumor heterogeneity in malignant pleural mesotheliomaCited by: 25
Author(s): Clément Meiller, François Montagne, Théo Z. Hirsch, Stefano Caruso, Julien De Wolf, Quentin Bayard, Jean-Baptiste Assié, Léa Meunier, Yuna Blum, Lisa Quetel, Laure Gibault, Ecaterina Pintilie, Cécile Badoual, Sarah Humez, Françoise Galateau-Sallé, Marie‐Christine Copin, Éric Letouzé, Arnaud Scherpereel, Jessica Zucman–Rossi, Françoise Le Pimpec‐Barthes, Marie-Claude Jaurand, Didier Jean
Software Mentions: 6
Published: almost 3 years ago
10.3389/fgene.2020.00311
Weighted Gene Coexpression Network Analysis of Features That Control Cancer Stem Cells Reveals Prognostic Biomarkers in Lung AdenocarcinomaCited by: 57
Author(s): Yi Liao, Yulei Wang, Mengqing Cheng, Chengliang Huang, Xiaoxuan Fan
Software Mentions: 6
Published: about 4 years ago
10.1186/s40659-021-00340-8
Identification of 5-methylcytosine-related signature for predicting prognosis in ovarian cancerCited by: 9
Author(s): Lei Wang, Song Gao
Software Mentions: 6
Published: almost 3 years ago
10.3389/fcvm.2020.580573
Comprehensive Identification of Key Genes Involved in Development of Diabetes Mellitus-Related Atherogenesis Using Weighted Gene Correlation Network AnalysisCited by: 14
Author(s): Qi Huang, Guo-Xiong Deng, Rongguo Wei, Qiaoye Wang, Donghua Zou, Jinru Wei
Software Mentions: 6
Published: over 3 years ago
10.3389/fmolb.2021.628546
Identification of Molecular Subtypes and Key Genes of Atherosclerosis Through Gene Expression ProfilesCited by: 3
Author(s): Yujia Yang, Yuchen Cai, Yuan Zhang, Yuanfu Xu, Zhiqiang Xu
Software Mentions: 6
Published: about 3 years ago
10.3389/fonc.2021.721644
CDT1 Is a Novel Prognostic and Predictive Biomarkers for Hepatocellular CarcinomaCited by: 14
Author(s): Chenhui Cai, Ying Zhang, Xu Hu, Wenhui Hu, Sizhen Yang, Hao Qiu, Tongwei Chu
Software Mentions: 6
Published: over 2 years ago
10.5808/gi.20074
Elucidating molecular mechanisms of acquired resistance to BRAF inhibitors in melanoma using a microfluidic device and deep sequencingCited by: 2
Author(s): Jiyeon Han, Yeonjoo Jung, Yukyung Jun, Sungsu Park, Sanghyuk Lee
Software Mentions: 6
Published: about 3 years ago
10.3389/fmolb.2021.607090
Identification of an IRGP Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder CancerCited by: 12
Author(s): Lianghao Zhang, Long‐Qing Li, Yonghao Zhan, Zhaowei Zhu, Xuepei Zhang
Software Mentions: 6
Published: about 3 years ago
10.3389/fmolb.2020.608368
Identification and Development of a Novel 4-Gene Immune-Related Signature to Predict Osteosarcoma PrognosisCited by: 12
Author(s): Mingde Cao, Junhui Zhang, Haiyan Xu, Zhujian Lin, Hong Chang, Yuchen Wang, Xusheng Huang, Xiang Chen, Hua Wang, Yancheng Song
Software Mentions: 6
Published: over 3 years ago
10.3389/fgene.2020.566159
Identifying 8-mRNAsi Based Signature for Predicting Survival in Patients With Head and Neck Squamous Cell Carcinoma via Machine LearningCited by: 10
Author(s): Yanhua Tian, Juncheng Wang, Chao Qin, Guanghao Zhu, Xuan Chen, Zhixiang Chen, Yuexiang Qin, Ming Wei, Zhexuan Li, Xin Zhang, Yunxia Lv, Gengming Cai
Software Mentions: 6
Published: over 3 years ago
10.1186/s12920-020-00819-5
Genomic profile of MYCN non-amplified neuroblastoma and potential for immunotherapeutic strategies in neuroblastomaCited by: 6
Author(s): Eun-Jin Lee, Ji Won Lee, Boram Lee, Kyunghee Park, Joon Ho Shim, Keon Hee Yoo, Hong Hoe Koo, Ki Woong Sung, Woong-Yang Park
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2020.578933
Comprehensive Analysis of Prognostic Markers for Acute Myeloid Leukemia Based on Four Metabolic GenesCited by: 7
Author(s): Yuanyuan Zhang, Shuai Ma, Moran Wang, Wei Shi, Yu Hu
Software Mentions: 6
Published: over 3 years ago
10.1186/s12879-020-05598-z
Comparing tuberculosis gene signatures in malnourished individuals using the TBSignatureProfilerCited by: 9
Author(s): W. Evan Johnson, Aubrey Odom, Chelsie Cintron, Mutharaj Muthaiah, Selby Knudsen, Noyal Mariya Joseph, Senbagavalli Prakash Babu, Subitha Lakshminarayanan, D. Graham Jenkins, Yue Zhao, Ethel Nankya, C. Robert Horsburgh, Gautam Roy, Jerrold J. Ellner, Sonali Sarkar, Padmini Salgame, Natasha S. Hochberg
Software Mentions: 6
Published: over 3 years ago
10.3390/genes11060623
Computational Analysis of Transcriptomic and Proteomic Data for Deciphering Molecular Heterogeneity and Drug Responsiveness in Model Human Hepatocellular Carcinoma Cell LinesCited by: 3
Author(s): Panagiotis Agioutantis, Heleni Loutrari, Fragiskos N. Kolisis
Software Mentions: 6
Published: almost 4 years ago
10.3389/fmolb.2020.598725
The Integrative Analysis Identifies Three Cancer Subtypes and Stemness Features in Cutaneous MelanomaCited by: 1
Author(s): Xiaoran Wang, Qi Wan, Lin Jin, Chengxiu Liu, Chang Liu, Yuanrong Cheng, Zhichong Wang
Software Mentions: 6
Published: over 3 years ago
10.3389/fmolb.2021.615084
Development of a Machine Learning-Based Autophagy-Related lncRNA Signature to Improve Prognosis Prediction in Osteosarcoma PatientsCited by: 12
Author(s): Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Enhui Ren, Wenhua Yuan, Yajun Deng, Qiqi Xie
Software Mentions: 6
Published: almost 3 years ago
10.18632/aging.103807
Identification of long-term survival-associated gene in breast cancerCited by: 12
Author(s): Shipeng Ning, Hui Li, Kun Qiao, Qin Wang, Meiying Shen, Yujuan Kang, Yanling Yin, Jiena Liu, Lei Liu, Siyu Hou, Yunlong Wang, Shouping Xu, Da Pang
Software Mentions: 6
Published: over 3 years ago
10.1002/1878-0261.12351
GeneExpressScore Signature: a robust prognostic and predictive classifier in gastric cancerCited by: 18
Author(s): Xiaoqiang Zhu, Xianglong Tian, Tiantian Sun, Chuangqi Yu, Yingying Cao, Tingting Yan, Chaoqin Shen, Yanwei Lin, Jing–Yuan Fang, Jie Hong, Haoyan Chen
Software Mentions: 6
Published: over 5 years ago
10.18632/aging.102683
DNAH10 mutation correlates with cisplatin sensitivity and tumor mutation burden in small-cell lung cancerCited by: 19
Author(s): Man Li, Anqi Lin, Peng Luo, Weitao Shen, Dan Xiao, Lan-ying Gou, Jian Zhang, Linlang Guo
Software Mentions: 6
Published: over 4 years ago
10.1002/1878-0261.12528
Estrogen therapy induces an unfolded protein response to drive cell death in <scp>ER</scp> + breast cancerCited by: 15
Author(s): Sarah R. Hosford, Kevin Shee, Jason D. Wells, Nicole A. Traphagen, Jennifer Fields, Riley A. Hampsch, Arminja N. Kettenbach, Eugene Demidenko, Todd W. Miller
Software Mentions: 6
Published: almost 5 years ago
10.3389/fgene.2021.701065
Identification of Tumor Antigens and Immune Landscape in Glioblastoma for mRNA Vaccine DevelopmentCited by: 12
Author(s): Liguo Ye, Long Wang, Jian Yang, Ping Hu, Chunyu Zhang, Shiao Tong, Zhennan Liu, Daofeng Tian
Software Mentions: 6
Published: over 2 years ago
10.3389/fonc.2020.557638
Tumor-Infiltrating Immune Cell Signature Predicts the Prognosis and Chemosensitivity of Patients With Pancreatic Ductal AdenocarcinomaCited by: 21
Author(s): Yinghong Gao, Shipeng Chen, Somayeh Vafaei, Xiaoli Zhong
Software Mentions: 6
Published: over 3 years ago
10.3389/fgene.2019.00025
LncRNAs GIHCG and SPINT1-AS1 Are Crucial Factors for Pan-Cancer Cells Sensitivity to LapatinibCited by: 20
Author(s): Zhen Xiang, Shuzheng Song, Zhenggang Zhu, Wenhong Sun, Jaron E. Gifts, Sam Q. Sun, Qiushi Shauna Li, Yingyan Yu, Keqin Kathy Li
Software Mentions: 6
Published: about 5 years ago
10.1186/s12943-017-0691-y
Multi-omics of 34 colorectal cancer cell lines - a resource for biomedical studiesCited by: 212
Author(s): Kaja Christine Graue Berg, Peter W. Eide, Ina A. Eilertsen, Bjarne Johannessen, Jarle Bruun, Stine A. Danielsen, Merete Bjørnslett, Leonardo A. Meza‐Zepeda, Mette Eknæs, Guro Elisabeth Lind, Ola Myklebost, Rolf Inge Skotheim, Anita Sveen, Ragnhild Lothe
Software Mentions: 6
Published: almost 7 years ago