Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

cran projects 6,234

cran: scales
Scale Functions for Visualization
Papers that mentioned: 104
cran: node2vec
Algorithmic Framework for Representational Learning on Graphs
Papers that mentioned: 104
cran: EMD
Empirical Mode Decomposition and Hilbert Spectral Analysis
Papers that mentioned: 102
cran: pbkrtest
Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models
Papers that mentioned: 102
cran: geoR
Analysis of Geostatistical Data
Papers that mentioned: 102
cran: mixtools
Tools for Analyzing Finite Mixture Models
Papers that mentioned: 100
cran: effsize
Efficient Effect Size Computation
Papers that mentioned: 100
cran: DSSAT
A Comprehensive R Interface for the DSSAT Cropping Systems Model
Papers that mentioned: 100
cran: fpc
Flexible Procedures for Clustering
Papers that mentioned: 99
cran: TE
Insertion/Deletion Dynamics for Transposable Elements
Papers that mentioned: 99
cran: LST
Land Surface Temperature Retrieval for Landsat 8
Papers that mentioned: 98
cran: ppcor
Partial and Semi-Partial (Part) Correlation
Papers that mentioned: 97
cran: SAMBA
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Papers that mentioned: 97
cran: fastText
Efficient Learning of Word Representations and Sentence Classification
Papers that mentioned: 97
cran: WASP
Wavelet System Prediction
Papers that mentioned: 97
cran: ordinal
Regression Models for Ordinal Data
Papers that mentioned: 97
cran: genoPlotR
Plot Publication-Grade Gene and Genome Maps
Papers that mentioned: 96
cran: rmeta
Meta-Analysis
Papers that mentioned: 96
cran: RMark
R Code for Mark Analysis
Papers that mentioned: 96
cran: xlsx
Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files
Papers that mentioned: 95
cran: MVA
An Introduction to Applied Multivariate Analysis with R
Papers that mentioned: 95
cran: survey
Analysis of Complex Survey Samples
Papers that mentioned: 95
cran: nortest
Tests for Normality
Papers that mentioned: 95
cran: foreign
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...
Papers that mentioned: 94
cran: tm
Text Mining Package
Papers that mentioned: 94
cran: FIT
Transcriptomic Dynamics Models in Field Conditions
Papers that mentioned: 94
cran: PerformanceAnalytics
Econometric Tools for Performance and Risk Analysis
Papers that mentioned: 93
cran: glmulti
Model Selection and Multimodel Inference Made Easy
Papers that mentioned: 93
cran: genepop
Population Genetic Data Analysis Using Genepop
Papers that mentioned: 92
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
cran: ENMeval
Automated Tuning and Evaluations of Ecological Niche Models
Papers that mentioned: 92
cran: EL
Two-Sample Empirical Likelihood
Papers that mentioned: 92
cran: PROMETHEE
Preference Ranking Organization METHod for Enrichment of Evaluations
Papers that mentioned: 92
cran: GUniFrac
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis
Papers that mentioned: 91
cran: ranger
A Fast Implementation of Random Forests
Papers that mentioned: 91
cran: phia
Post-Hoc Interaction Analysis
Papers that mentioned: 90
cran: nparLD
Nonparametric Analysis of Longitudinal Data in Factorial Experiments
Papers that mentioned: 90
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: VGAM
Vector Generalized Linear and Additive Models
Papers that mentioned: 89
cran: GET
Global Envelopes
Papers that mentioned: 89
cran: TANDEM
A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data Types
Papers that mentioned: 89
cran: visreg
Visualization of Regression Models
Papers that mentioned: 89
cran: TEAM
Multiple Hypothesis Testing on an Aggregation Tree Method
Papers that mentioned: 88
cran: relaimpo
Relative Importance of Regressors in Linear Models
Papers that mentioned: 88
cran: tmap
Thematic Maps
Papers that mentioned: 88
cran: ProFit
Fit Projected 2D Profiles to Galaxy Images
Papers that mentioned: 88
cran: MendelianRandomization
Mendelian Randomization Package
Papers that mentioned: 88
cran: minpack.lm
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds
Papers that mentioned: 87
cran: GGally
Extension to 'ggplot2'
Papers that mentioned: 87
cran: GeneNet
Modeling and Inferring Gene Networks
Papers that mentioned: 87
cran: bipartite
Visualising Bipartite Networks and Calculating Some (Ecological) Indices
Papers that mentioned: 86
cran: genetics
Population Genetics
Papers that mentioned: 86
cran: qtl
Tools for Analyzing QTL Experiments
Papers that mentioned: 86
cran: rworldmap
Mapping Global Data
Papers that mentioned: 86
cran: MGL
Module Graphical Lasso
Papers that mentioned: 85
cran: gmodels
Various R Programming Tools for Model Fitting
Papers that mentioned: 85
cran: diveRsity
A Comprehensive, General Purpose Population Genetics Analysis Package
Papers that mentioned: 85
cran: metan
Multi Environment Trials Analysis
Papers that mentioned: 85
cran: usdm
Uncertainty Analysis for Species Distribution Models
Papers that mentioned: 85
cran: deconstructSigs
Identifies Signatures Present in a Tumor Sample
Papers that mentioned: 85
cran: lubridate
Make Dealing with Dates a Little Easier
Papers that mentioned: 84
cran: SMM
Simulation and Estimation of Multi-State Discrete-Time Semi-Markov and Markov Models
Papers that mentioned: 84
cran: lmPerm
Permutation Tests for Linear Models
Papers that mentioned: 83
cran: CATT
The Cochran-Armitage Trend Test
Papers that mentioned: 82
cran: arm
Data Analysis Using Regression and Multilevel/Hierarchical Models
Papers that mentioned: 82
cran: effects
Effect Displays for Linear, Generalized Linear, and Other Models
Papers that mentioned: 82
cran: ggstatsplot
'ggplot2' Based Plots with Statistical Details
Papers that mentioned: 82
cran: mirt
Multidimensional Item Response Theory
Papers that mentioned: 81
cran: NCA
Necessary Condition Analysis
Papers that mentioned: 81
cran: GGIR
Raw Accelerometer Data Analysis
Papers that mentioned: 81
cran: SOLOMON
Parentage analysis
Papers that mentioned: 81
cran: MatrixEQTL
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
Papers that mentioned: 81
cran: EDA
Energy Decomposition Analysis
Papers that mentioned: 81
cran: Matching
Multivariate and Propensity Score Matching with Balance Optimization
Papers that mentioned: 81
cran: ltm
Latent Trait Models under IRT
Papers that mentioned: 81
cran: IDE
Integro-Difference Equation Spatio-Temporal Models
Papers that mentioned: 81
cran: BI
Blinding Assessment Indexes for Randomized, Controlled, Clinical Trials
Papers that mentioned: 81
cran: DIRECT
Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
Papers that mentioned: 81
cran: SSP
Simulated Sampling Procedure for Community Ecology
Papers that mentioned: 81
cran: vcd
Visualizing Categorical Data
Papers that mentioned: 80
cran: TCA
Tensor Composition Analysis
Papers that mentioned: 80
cran: readr
Read Rectangular Text Data
Papers that mentioned: 80
cran: mrMLM
Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWAS
Papers that mentioned: 79
cran: GPP
Gaussian Process Projection
Papers that mentioned: 79
cran: cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79
cran: CTT
Classical Test Theory Functions
Papers that mentioned: 78
cran: tableone
Create 'Table 1' to Describe Baseline Characteristics with or without Propensity Score Weights
Papers that mentioned: 78
cran: mada
Meta-Analysis of Diagnostic Accuracy
Papers that mentioned: 78
cran: circular
Circular Statistics
Papers that mentioned: 77
cran: SIS
Sure Independence Screening
Papers that mentioned: 77
cran: party
A Laboratory for Recursive Partytioning
Papers that mentioned: 76
cran: CMplot
Circle Manhattan Plot
Papers that mentioned: 76
cran: DSI
'DataSHIELD' Interface
Papers that mentioned: 76
cran: atlas
Stanford 'ATLAS' Search Engine API
Papers that mentioned: 75
cran: MVN
Multivariate Normality Tests
Papers that mentioned: 75
cran: flashClust
Implementation of optimal hierarchical clustering
Papers that mentioned: 74
cran: ncf
Spatial Covariance Functions
Papers that mentioned: 74
cran: MALDIquant
Quantitative Analysis of Mass Spectrometry Data
Papers that mentioned: 74
cran: AUC
Threshold Independent Performance Measures for Probabilistic Classifiers
Papers that mentioned: 74
cran: heatmap3
An Improved Heatmap Package
Papers that mentioned: 74