cran: SAMBA | Projects | Ecosyste.ms: Papers

10.1186/s12859-017-1487-1

A systematic comparative evaluation of biclustering techniques
Cited by: 94
Author(s): Victor Alexandre Padilha, Ricardo J. G. B. Campello
Software Mentions: 10
Published: almost 8 years ago

TuBA: Tunable biclustering algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer
Cited by: 6
Author(s): Amartya Singh, Gyan Bhanot, Hossein Khiabanian
Software Mentions: 10
Published: over 5 years ago

10.1186/1756-0381-5-8

A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data
Cited by: 24
Author(s): Li Li, Yang Guo, Wenwu Wu, Yinggang Shi, Jian Cheng, Shiheng Tao
Software Mentions: 7
Published: over 12 years ago

10.1371/journal.pone.0090801

Biclustering Methods: Biological Relevance and Application in Gene Expression Analysis
Cited by: 77
Author(s): Ali Oghabian, Sami Kilpinen, Sampsa Hautaniemi, Elena Czeizler
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pcbi.1002228

Comparative Microbial Modules Resource: Generation and Visualization of Multi-species Biclusters
Cited by: 7
Author(s): Thadeous J. Kacmarczyk, Peter Waltman, Ashley R. Bate, Patrick Eichenberger, Richard Bonneau
Software Mentions: 5
Published: almost 13 years ago

10.3389/fgene.2019.00159

A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene Signatures
Cited by: 22
Author(s): Adib Shafi, Tin Nguyen, Azam Peyvandipour, Hung Son Nguyen, Sorin Drăghici
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0082890

SiBIC: A Web Server for Generating Gene Set Networks Based on Biclusters Obtained by Maximal Frequent Itemset Mining
Cited by: 1
Author(s): Keiichiro Takahashi, Ichigaku Takigawa, Hiroshi Mamitsuka
Software Mentions: 4
Published: almost 11 years ago

10.1186/gb-2010-11-9-r96

Multi-species integrative biclustering
Cited by: 35
Author(s): Peter Waltman, Thadeous J. Kacmarczyk, Ashley R. Bate, Daniel B. Kearns, David J Reiss, Patrick Eichenberger, Richard Bonneau
Software Mentions: 4
Published: almost 15 years ago

10.1155/2016/3059767

Evaluation of Plaid Models in Biclustering of Gene Expression Data
Cited by: 3
Author(s): Hamid Alavi Majd, Soodeh Shahsavari, Ahmad Reza Baghestani, Seyyed Mohammad Tabatabaei, Naghme Khadem Bashi, Mostafa Rezaei Tavirani, Mohsen Hamidpour
Software Mentions: 3
Published: almost 9 years ago

10.3389/fgene.2019.00155

A Comprehensive Survey of Tools and Software for Active Subnetwork Identification
Cited by: 42
Author(s): Hung Son Nguyen, Sangam Shrestha, Duc Tran, Adib Shafi, Sorin Drăghici, Tin Nguyen
Software Mentions: 3
Published: over 5 years ago

10.1186/1748-7188-6-18

DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach
Cited by: 61
Author(s): Akdes Serin, Martin Vingron
Software Mentions: 3
Published: over 13 years ago

10.1186/1471-2105-7-280

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
Cited by: 240
Author(s): David J Reiss, Nitin S. Baliga, Richard Bonneau
Software Mentions: 3
Published: over 18 years ago

10.1186/1752-0509-2-33

Extracting expression modules from perturbational gene expression compendia
Cited by: 16
Author(s): Steven Maere, Patrick Van Dijck, Martin Kuiper
Software Mentions: 3
Published: over 16 years ago

10.1186/1742-4682-8-39

Construction of gene regulatory networks using biclustering and bayesian networks
Cited by: 20
Author(s): Fadhl Alakwaa, Nahed H. Solouma, Yasser M. Kadah
Software Mentions: 3
Published: about 13 years ago

10.1371/journal.pone.0188900

FGMD: A novel approach for functional gene module detection in cancer
Cited by: 6
Author(s): Dao‐Chao Jin, Hyunju Lee
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2105-6-232

EXPANDER – an integrative program suite for microarray data analysis
Cited by: 309
Author(s): Ron Shamir, Adi Maron‐Katz, Amos Tanay, Chaim Linhart, Israel Steinfeld, Roded Sharan, Yosef Shiloh, Ran Elkon
Software Mentions: 2
Published: about 19 years ago

10.1186/s12862-015-0466-2

Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus
Cited by: 36
Author(s): Praveen Baskaran, Christian Rödelsperger, Neel Prabh, Vahan Serobyan, Gabriel V. Markov, Antje Hirsekorn, Christoph Dieterich
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2148-8-116

Genome classification by gene distribution: An overlapping subspace clustering approach
Cited by: 11
Author(s): Jason Li, Saman K. Halgamuge, Sen‐Lin Tang
Software Mentions: 2
Published: over 16 years ago

10.1186/1748-7188-5-23

Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms
Cited by: 27
Author(s): Burton Kuan Hui Chia, R. Krishna Murthy Karuturi
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0233755

A Geometric Clustering Tool (AGCT) to robustly unravel the inner cluster structures of time-series gene expressions
Cited by: 3
Author(s): Richard Nock, Natalia Polouliakh, Frank Nielsen, Keigo Oka, Carlin R. Connell, Cedric Heimhofer, Kazuhiro Shibanai, Samik Ghosh, Ken‐ichi Aisaki, Satoshi Kitajima, Jun Kanno, Taketo Akama, Hiroaki Kitano
Software Mentions: 2
Published: over 4 years ago

10.1155/2015/198363

A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data
Cited by: 616
Author(s): Zena M. Hira, Donald Gillies
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0245085

Viral load care of HIV-1 infected children and adolescents: A longitudinal study in rural Zimbabwe
Cited by: 3
Author(s): Tichaona Mapangisana, Rhoderick Machekano, Vinie Kouamou, Caroline Maposhere, Kathy McCarty, Marceline Mudzana, Shungu Munyati, Junior Mutsvangwa, Justen Manasa, Tinei Shamu, Mampedi Bogoshi, Dennis Israelski, David Katzenstein
Software Mentions: 2
Published: almost 4 years ago

10.1177/1753495X20929502

Provision of acute medicine services for pregnant women in UK hospitals: Data from the Society for Acute Medicine Benchmarking Audit 2019
Cited by: 1
Author(s): Catherine Atkin, Paarul Prinja, Anita Banerjee, Mark Holland, Daniel Lasserson
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-9-S1-S4

Bayesian biclustering of gene expression data
Cited by: 134
Author(s): Jian Gu, Jun S. Liu
Software Mentions: 2
Published: almost 17 years ago

10.1371/journal.pone.0209778

Field evaluation of near point of care Cepheid GeneXpert HIV-1 Qual for early infant diagnosis
Cited by: 19
Author(s): Valarie Opollo, Alliance Nikuze, Jihane Ben‐Farhat, Emily Anyango, Felix Humwa, Boaz Oyaro, Stephen Wanjala, Willis Omwoyo, Maxwel Majiwa, Victor Akelo, Clement Zeh, David Maman
Software Mentions: 2
Published: almost 6 years ago

10.1155/2014/497046

Point of Care Technologies for HIV
Cited by: 39
Author(s): Mohan Kumar Haleyur Giri Setty, Indira Hewlett
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2105-8-250

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
Cited by: 63
Author(s): Curtis Huttenhower, Avi I. Flamholz, Jessica Landis, Sauhard Sahi, Chad L. Myers, Kellen L. Olszewski, Matthew A. Hibbs, Nathan O. Siemers, Olga G. Troyanskaya, Hilary A. Coller
Software Mentions: 2
Published: over 17 years ago

10.1186/1471-2105-6-101

MARS: Microarray analysis, retrieval, and storage system
Cited by: 59
Author(s): Michael Maurer, Robert Molidor, Alexander Sturn, Jürgen Hartler, Hubert Hackl, Gernot Stocker, Andreas Prokesch, Marcel Scheideler, Zlatko Trajanoski
Software Mentions: 2
Published: over 19 years ago

10.1371/journal.pone.0013348

Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks
Cited by: 18
Author(s): Recep Çolak, Flavia Moser, Jeffrey Shih-Chieh Chu, Alexander Schönhuth, Nansheng Chen, Martin Ester
Software Mentions: 2
Published: about 14 years ago

10.1039/c9sc03291f

Low-order many-body interactions determine the local structure of liquid water
Cited by: 36
Author(s): Marc Riera, Eleftherios Lambros, Thanh Nguyen, Andreas W. Götz, Francesco Paesani
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-11-477

A bi-ordering approach to linking gene expression with clinical annotations in gastric cancer
Cited by: 4
Author(s): Fan Shi, Christopher Leckie, Geoff Macintyre, Izhak Haviv, Alex Boussioutas, Adam Kowalczyk
Software Mentions: 2
Published: about 14 years ago

10.1186/1756-0500-2-124

BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data
Cited by: 65
Author(s): Joana P. Gonçalves, Sara C. Madeira, Arlindo L. Oliveira
Software Mentions: 2
Published: almost 16 years ago

10.1186/1471-2105-16-S4-S7

Analysis of miRNA expression profiles in breast cancer using biclustering
Cited by: 29
Author(s): Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo, Alfonso Urso
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2021.697553

Comparative Analysis of Fecal Microbiomes From Wild Waterbirds to Poultry, Cattle, Pigs, and Wastewater Treatment Plants for a Microbial Source Tracking Approach
Cited by: 14
Author(s): Amine M. Boukerb, Cyril Noël, Emmanuelle Quenot, Bernard Cadiou, Julien Chevé, Laure Quintric, Alexandre Cormier, Luc Dantan, Michèle Gourmelon
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-9-458

Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Cited by: 56
Author(s): Peter A. DiMaggio, Scott R. McAllister, Christodoulos A. Floudas, Feng Xiao, Joshua D. Rabinowitz, Herschel Rabitz
Software Mentions: 2
Published: about 16 years ago

10.1186/1471-2105-10-218

Transcriptional programs: Modelling higher order structure in transcriptional control
Cited by: 3
Author(s): John E. Reid, Sascha Ott, Lorenz Wernisch
Software Mentions: 2
Published: over 15 years ago

10.1186/gb-2012-13-6-r55

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence
Cited by: 8
Author(s): Jüri Reimand, Anu Aun, Jaak Vilo, Juan M. Vaquerizas, Juhan Sedman, Nicholas M. Luscombe
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2105-11-43

Discovering local patterns of co - evolution: computational aspects and biological examples
Cited by: 8
Author(s): Tamir Tuller, Yifat Felder, Martin Kupiec
Software Mentions: 2
Published: almost 15 years ago

10.1186/1471-2105-12-S12-S1

Discovery of error-tolerant biclusters from noisy gene expression data
Cited by: 20
Author(s): Rohit Gupta, Navneet Rao, Vipin Kumar
Software Mentions: 2
Published: almost 13 years ago

10.1186/s13015-016-0074-8

BicNET: Flexible module discovery in large-scale biological networks using biclustering
Cited by: 29
Author(s): Rui Henriques, Sara C. Madeira
Software Mentions: 2
Published: over 8 years ago

10.1186/gb-2006-7-5-r37

Cited by: 93
Author(s): Kim Lemmens, Thomas Dhollander, Tijl De Bie, Pieter Monsieurs, Kristof Engelen, Bart Smets, Joris Winderickx, Bart De Moor, Kathleen Marchal
Software Mentions: 1
Published: almost 19 years ago

10.1186/gb-2009-10-3-r27

DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli
Cited by: 51
Author(s): Kim Lemmens, Tijl De Bie, Thomas Dhollander, Sigrid C. J. De Keersmaecker, Inge M Thijs, Geert Schoofs, Ami De Weerdt, Bart De Moor, Jos Vanderleyden, Julio Collado‐Vides, Kristof Engelen, Kathleen Marchal
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12961-021-00729-7

How to disseminate national recommendations for physical activity: a qualitative analysis of critical change agents in Germany
Cited by: 9
Author(s): Laura Wolbring, Anne K. Reimers, Claudia Niessner, Yolanda Demetriou, Steffen Schmidt, Alexander Wöll, Hagen Wäsche
Software Mentions: 1
Published: over 3 years ago

10.1186/s13012-015-0353-7

Implementing international osteoarthritis treatment guidelines in primary health care: study protocol for the SAMBA stepped wedge cluster randomized controlled trial
Cited by: 14
Author(s): Nina Østerås, Leti van Bodegom‐Vos, Krysia Dziedzic, T. Moseng, Eline Aas, Øyvor Andreassen, Ibrahim Mdala, Bent Natvig, Jan Harald Røtterud, Unni-Berit Schjervheim, Thea Vliet Vlieland, Kåre Birger Hagen
Software Mentions: 1
Published: almost 9 years ago

10.1128/JCM.00740-13

Duplex Molecular Assay Intended for Point-of-Care Diagnosis of Influenza A/B Virus Infection
Cited by: 21
Author(s): Liang-Ta Wu, Isabelle Thomas, Martin D. Curran, Joanna Ellis, Surendra Parmar, Neha Goel, Pia I. Sharma, Jean‐Pierre Allain, Helen H. Lee
Software Mentions: 1
Published: about 11 years ago

10.1128/JCM.00593-14

SAMBA HIV Semiquantitative Test, a New Point-of-Care Viral-Load-Monitoring Assay for Resource-Limited Settings
Cited by: 88
Author(s): Allyson Ritchie, Ines Ushiro‐Lumb, Daniel Edemaga, Hrishikesh Joshi, Annemiek de Ruiter, Elisabeth Szumilin, Isabelle Jendrulek, Megan McGuire, Neha Goel, Pia I. Sharma, Jean Pierre Allain, Helen H. Lee
Software Mentions: 1
Published: about 10 years ago

10.1128/JCM.01262-20

Performance Evaluation of the SAMBA II SARS-CoV-2 Test for Point-of-Care Detection of SARS-CoV-2
Cited by: 35
Author(s): Sonny Michael Assennato, Allyson Ritchie, Cesar Nadala, Neha Goel, Cuijuan Tie, Lourdes M Nadala, Hongyi Zhang, Rawlings Datir, Gupta Rk, Martin D. Curran, Helen H. Lee
Software Mentions: 1
Published: almost 4 years ago

10.1128/JCM.02555-20

Study To Evaluate the Performance of a Point-of-Care Whole-Blood HIV Viral Load Test (SAMBA II HIV-1 Semi-Q Whole Blood)
Cited by: 4
Author(s): Gary Brook, Tetiana Stepchenkova, Innocent Mbulli Ali, Sandra Chipuka, Neha Goel, Helen Lee
Software Mentions: 1
Published: almost 4 years ago

10.1093/jxb/erz522

Molecular networks regulating cell division during Arabidopsis leaf growth
Cited by: 67
Author(s): J. Vercruysse, Alexandra Baekelandt, Nathalie González
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1006991

Cross-sectional analysis of CD8 T cell immunity to human herpesvirus 6B
Cited by: 11
Author(s): Larissa K. Martin, Alexandra Hollaus, Anna Stahuber, Christoph Hübener, Alessia Fraccaroli, Johanna Tischer, Andrea Schub, Andreas Moosmann
Software Mentions: 1
Published: over 6 years ago

10.1186/1465-9921-6-81

CD8+ T lymphocytes in lung tissue from patients with idiopathic pulmonary fibrosis
Cited by: 53
Author(s): Zoe Daniil, Panagiota Kitsanta, George E. Kapotsis, Maria Mathioudaki, Androniki Kollintza, Marilena Karatza, J. Milic‐Emili, Charis Roussos, Spyros Papiris
Software Mentions: 1
Published: over 19 years ago

10.1126/sciadv.abe5054

INSIGHT: A population-scale COVID-19 testing strategy combining point-of-care diagnosis with centralized high-throughput sequencing
Cited by: 49
Author(s): Qili Wu, Chenqu Suo, Tom Brown, Tengyao Wang, Sarah A. Teichmann, Andrew Bassett
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph17238952

Theory-Based, Participatory Development of a Cross-Company Network Promoting Physical Activity in Germany: A Mixed-Methods Approach
Cited by: 4
Author(s): Carina Hoffmann, Gerrit Stassen, Andrea Schaller
Software Mentions: 1
Published: almost 4 years ago

10.2196/16332

Prospective Evaluation of HIV Testing Technologies in a Clinical Setting: Protocol for Project DETECT
Cited by: 6
Author(s): Joanne D. Stekler, Lauren R Violette, Hollie Clark, Sarah J McDougal, Lisa A Niemann, David A. Katz, Pollyanna R Chavez, Laura G. Wesolowski, Steven F. Ethridge, Vanessa McMahan, Andy Cornelius-Hudson, Kevin P. Delaney
Software Mentions: 1
Published: almost 5 years ago

10.18632/oncotarget.11413

Prognostic and predictive value of EGFR in head and neck squamous cell carcinoma
Cited by: 125
Author(s): Paolo Bossi, Carlo Resteghini, Nicholas Paielli, Lisa Licitra, Silvana Pilotti, Francesco Perrone
Software Mentions: 1
Published: over 8 years ago

10.2147/JPR.S116614

Keele Aches and Pains Study protocol: validity, acceptability, and feasibility of the Keele STarT MSK tool for subgrouping musculoskeletal patients in primary care
Cited by: 40
Author(s): Paul Campbell, Jonathan Hill, Joanne Protheroe, Ebenezer Afolabi, Martyn Lewis, Ruth Beardmore, Elaine M Hay, Christian Mallen, Bernadette Bartlam, Benjamin Saunders, Daniëlle A. van der Windt, Sue Jowett, Nadine E Foster, Kate M. Dunn
Software Mentions: 1
Published: about 8 years ago

10.1186/s12967-016-1086-3

The magnitude of nephron number reduction mediates intrauterine growth-restriction-induced long term chronic renal disease in the rat. A comparative study in two experimental models
Cited by: 25
Author(s): Farid Boubred, Laurent Daniel, Christophe Buffat, Michel Tsimaratos, Charles Oliver, Martine Lelièvre-Pégorier, Umberto Simeoni
Software Mentions: 1
Published: almost 8 years ago

10.3390/audiolres11020019

Review of Bone Conduction Hearing Devices
Cited by: 33
Author(s): Susan E. Ellsperman, Emily M. Nairn, Emily Z. Stucken
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-12-S9-S9

Detecting genomic regions associated with a disease using variability functions and Adjusted Rand Index
Cited by: 4
Author(s): Dunarel Badescu, Alix Boc, Abdoulaye Baniré Diallo, Vladimir Makarenkov
Software Mentions: 1
Published: about 13 years ago

10.1186/s12859-016-1356-3

A new method of finding groups of coexpressed genes and conditions of coexpression
Cited by: 2
Author(s): Rajat Anand, Srikanth Ravichandran, Samrat Chatterjee
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2105-9-294

Relating gene expression data on two-component systems to functional annotations in Escherichia coli
Cited by: 8
Author(s): Anne Denton, Jianfei Wu, Megan K Townsend, Preeti Sule, Birgit M. Prüß
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-8-283

Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Cited by: 28
Author(s): Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2105-11-S1-S22

SFSSClass: an integrated approach for miRNA based tumor classification
Cited by: 6
Author(s): Ramkrishna Mitra, Sanghamitra Bandyopadhyay, Ujjwal Maulik, Michael Q. Zhang
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2105-9-209

Discovering biclusters in gene expression data based on high-dimensional linear geometries
Cited by: 85
Author(s): Xiangchao Gan, Alan Wee‐Chung Liew, Hong Yan
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2407-14-479

Expression of astrocyte elevated gene-1 (AEG-1) as a biomarker for aggressive pancreatic ductal adenocarcinoma
Cited by: 12
Author(s): Yan Huang, Guoping Ren, Chenyu Xu, Shui-Feng Dong, Ying Wang, Yun Gan, Li Zhu, Tian-Yuan Feng
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2407-10-608

High number of CD45RO+ tumor infiltrating lymphocytes is an independent prognostic factor in non-metastasized (stage I-IIA) esophageal adenocarcinoma
Cited by: 50
Author(s): Sandra Rauser, Rupert Langer, Sebastian Tschernitz, Peter Gais, Uta Jütting, Marcus Feith, Heinz Höfler, Axel Walch
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2164-9-439

Identifying gene regulatory modules of heat shock response in yeast
Cited by: 42
Author(s): Weisheng Wu, Wen-Hsiung Li
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2164-9-S2-S20

Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data
Cited by: 9
Author(s): Kenneth Bryan, Pádraig Cunningham
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2474-15-97

Early tissue responses to zoledronate, locally delivered by bone screw, into a compromised cancellous bone site: a pilot study
Cited by: 12
Author(s): Joerg Arnoldi, Antoine Alves, Philip Procter
Software Mentions: 1
Published: over 10 years ago

10.1186/s12891-020-03235-z

Low adherence to exercise may have influenced the proportion of OMERACT-OARSI responders in an integrated osteoarthritis care model: secondary analyses from a cluster-randomised stepped-wedge trial
Cited by: 11
Author(s): T. Moseng, Hanne Dagfinrud, Leti van Bodegom‐Vos, Krysia Dziedzic, Kåre Birger Hagen, Bent Natvig, Jan Harald Røtterud, Thea Vliet Vlieland, Nina Østerås
Software Mentions: 1
Published: over 4 years ago

10.1186/2050-6511-15-45

Palonosetron versus ondansetron as rescue medication for postoperative nausea and vomiting: a randomized, multicenter, open-label study
Cited by: 16
Author(s): Keith A. Candiotti, Syed Raza Ahmed, David L. Cox, Tong J. Gan
Software Mentions: 1
Published: over 10 years ago

10.1186/s12884-016-1006-9

Use of metabolomics for the identification and validation of clinical biomarkers for preterm birth: Preterm SAMBA
Cited by: 33
Author(s): José Guilherme Cecatti, Renato T. Souza, Karolina Sulek, Maria Laura Costa, Louise C. Kenny, Lesley McCowan, Rodolfo C. Pacagnella, Silas G. Villas‐Bôas, Jussara Mayrink, Renato Passini, Kleber G. Franchini, Philip N. Baker
Software Mentions: 1
Published: over 8 years ago

10.1186/s12884-021-03653-4

Samba II PCR testing for COVID-19 in pregnant women: a retrospective cohort study and literature review
Cited by: 3
Author(s): Ruiling Xu, Tara Pauley, Hannah Missfelder-Lobos, Richard Haddon, Ravindra Gupta, Hsu Phern Chong
Software Mentions: 1
Published: over 3 years ago

10.1186/1752-0509-7-90

Topology of molecular interaction networks
Cited by: 89
Author(s): Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder
Software Mentions: 1
Published: almost 12 years ago

10.1136/bmjopen-2016-012445

Does a modified STarT Back Tool predict outcome with a broader group of musculoskeletal patients than back pain? A secondary analysis of cohort data
Cited by: 46
Author(s): Jonathan Hill, Ebenezer Afolabi, Martyn Lewis, Kate M. Dunn, Edward Roddy, Daniëlle A. van der Windt, Nadine E Foster
Software Mentions: 1
Published: about 8 years ago

10.1186/1756-0381-4-3

Biclustering of Gene Expression Data by Correlation-Based Scatter Search
Cited by: 54
Author(s): Juan A. Nepomuceno, Alicia Troncoso, Jesús S. Aguilar–Ruiz
Software Mentions: 1
Published: almost 14 years ago

10.1093/bioinformatics/bts476

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data
Cited by: 109
Author(s): Wenyuan Li, Shihua Zhang, Chun-Chi Liu, Xianghong Jasmine Zhou
Software Mentions: 1
Published: over 12 years ago

10.3390/medicina54010003

Point of Care Diagnostics for HIV in Resource Limited Settings: An Overview
Cited by: 29
Author(s): Sello Lebohang Manoto, Masixole Yvonne Lugongolo, Ureshnie Govender, Patience Mthunzi‐Kufa
Software Mentions: 1
Published: over 6 years ago

10.14814/phy2.13296

Neonatal high protein intake enhances neonatal growth without significant adverse renal effects in spontaneous IUGR piglets
Cited by: 6
Author(s): Farid Boubred, Agnès Jamin, Christophe Buffat, Laurent Daniel, Patrick Borel, Gaëlle Boudry, Isabelle Le Huërou‐Luron, Umberto Simeoni
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.0030248

Determinants of Protein Abundance and Translation Efficiency in S. cerevisiae
Cited by: 118
Author(s): Tamir Tuller, Martin Kupiec, Eytan Ruppin
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pcbi.1004042

A Computational Approach to Identifying Gene-microRNA Modules in Cancer
Cited by: 36
Author(s): Dao‐Chao Jin, Hyunju Lee
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pmed.1002949

Implementing a structured model for osteoarthritis care in primary healthcare: A stepped-wedge cluster-randomised trial
Cited by: 31
Author(s): Nina Østerås, T. Moseng, Leti van Bodegom‐Vos, Krysia Dziedzic, Ibrahim Mdala, Bent Natvig, Jan Harald Røtterud, Unni-Berit Schjervheim, Thea Vliet Vlieland, Øyvor Andreassen, Jorun Nystuen Hansen, Kåre Birger Hagen
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pntd.0000986

Correlation of Clinical Trachoma and Infection in Aboriginal Communities
Cited by: 29
Author(s): C Michel, Katrina Roper, Magda A. Divena, Helen H. Lee, Hugh R. Taylor
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0218369

Systematic review of the performance and clinical utility of point of care HIV-1 RNA testing for diagnosis and care
Cited by: 39
Author(s): Clara Agutu, Caroline Ngetsa, Matt A. Price, Tobias F. Rinke de Wit, Gloria Omosa-Manyonyi, Eduard J. Sanders, Susan M. Graham
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0168412

Integration of MicroRNA, mRNA, and Protein Expression Data for the Identification of Cancer-Related MicroRNAs
Cited by: 33
Author(s): Ji‐Youn Seo, Dao‐Chao Jin, Chan-Hun Choi, Hyunju Lee
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0016835

Directed Partial Correlation: Inferring Large-Scale Gene Regulatory Network through Induced Topology Disruptions
Cited by: 30
Author(s): Yinyin Yuan, Chang-Tsun Li, Oliver P. Windram
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0086889

Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle
Cited by: 42
Author(s): Grégory Carrier, Matthieu Garnier, Loïc Le Cunff, Gaël Bougaran, Ian Probert, Colomban de Vargas, Matthieu Le Corre, Jean‐Paul Cadoret, Bruno Saint‐Jean
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0063516

Long Noncoding RNA HOTAIR Is a Prognostic Marker for Esophageal Squamous Cell Carcinoma Progression and Survival
Cited by: 138
Author(s): Xiaobin Lv, Gui-Yong Lian, Haoran Wang, Erwei Song, Herui Yao, Minghui Wang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0208403

Showup identification decisions for multiple perpetrator crimes: Testing for sequential dependencies
Cited by: 2
Author(s): Nina Tupper, Melanie Sauerland, James D. Sauer, Nick J. Broers, Steve D. Charman, Lorraine Hope
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0061134

From Data towards Knowledge: Revealing the Architecture of Signaling Systems by Unifying Knowledge Mining and Data Mining of Systematic Perturbation Data
Cited by: 12
Author(s): Songjian Lu, Bo Jin, L. Ashley Cowart, Xinghua Lu
Software Mentions: 1
Published: over 11 years ago

10.1007/s12667-020-00420-w

Implications to the electricity system of Paraguay of different demand scenarios and export prices to Brazil
Cited by: 4
Author(s): Ioannis Pappis, Carlos Centurion, Eunice Ramos, Mark Howells, Silvia Ulloa, Eduardo Ortigoza, Pedro E. Gardel-Sotomayor, Thomas Alfstad
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmed.2015.00040

Triple Therapy with Scopolamine, Ondansetron, and Dexamethasone for Prevention of Postoperative Nausea and Vomiting in Moderate to High-Risk Patients Undergoing Craniotomy Under General Anesthesia: A Pilot Study
Cited by: 8
Author(s): Sergio D. Bergese, Maria A. Antor, Alberto Uribe, Vedat Yıldız, Joseph Werner
Software Mentions: 1
Published: over 9 years ago

10.3389/fmed.2016.00029

A Prospective, Randomized, Double-Blinded, Double-Dummy Pilot Study to Assess the Preemptive Effect of Triple Therapy with Aprepitant, Dexamethasone, and Promethazine versus Ondansetron, Dexamethasone, and Promethazine on Reducing the Incidence of Postoper
Cited by: 12
Author(s): Sergio D. Bergese, Erika G. Puente, Maria A. Antor, Adolfo Viloria, Vedat Yıldız, Nicolas Kumar, Alberto Uribe
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.01546

T-Bet Controls Susceptibility of Mice to Coxiella burnetii Infection
Cited by: 5
Author(s): Soraya Mezouar, Hubert Lépidi, Ikram Omar Osman, Jean‐Pierre Gorvel, Didier Raoult, Jean‐Louis Mège, Yassina Bechah
Software Mentions: 1
Published: over 4 years ago

10.3389/fphy.2020.00088

Optimizing Diffusion Imaging Protocols for Structural Connectomics in Mouse Models of Neurological Conditions
Cited by: 9
Author(s): Robert J. Anderson, Christopher M. Long, Evan Calabrese, Scott H. Robertson, G. Allan Johnson, Gary P. Cofer, Richard O’Brien, Alexandra Badea
Software Mentions: 1
Published: over 4 years ago

10.3390/genes10090702

Identifying Interaction Clusters for MiRNA and MRNA Pairs in TCGA Network
Cited by: 12
Author(s): Xinqing Dai, Lizhong Ding, Hannah Liu, Zhou Xu, Hui Jiang, Samuel K. Handelman, Yongsheng Bai
Software Mentions: 1
Published: about 5 years ago

Projects: cran: SAMBA

Papers Mentioning SAMBA 97