cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1155/2020/2507074

A Network Pharmacology-Based Identification Study on the Mechanism of Xiao-Xu-Ming Decoction for Cerebral Ischemic Stroke
Cited by: 8
Author(s): Dehui Li, Yifan Su, Cheng-Yi Sun, Huanfang Fan, Weijuan Gao
Software Mentions: 8
Published: almost 6 years ago

10.3389/fcell.2021.665869

Enhancing Fatty Acid Catabolism of Macrophages Within Aberrant Breast Cancer Tumor Microenvironment Can Re-establish Antitumor Function
Cited by: 4
Author(s): Yucui Gu, Xingjian Niu, Lei Yin, Yiran Wang, Yue Yang, Xudong Yang, Qingyuan Zhang, Hongfei Ji
Software Mentions: 8
Published: over 5 years ago

10.3390/toxins13080583

Metaproteomics Reveals Alteration of the Gut Microbiome in Weaned Piglets Due to the Ingestion of the Mycotoxins Deoxynivalenol and Zearalenone
Cited by: 6
Author(s): Johan S. Sáenz, Alina Kurz, Ursula Ruczizka, Moritz Bünger, Maximiliane Dippel, Veronika Nagl, Bertrand Grenier, Andrea Ladinig, Jana Seifert, Evelyne Selberherr
Software Mentions: 8
Published: about 5 years ago

10.3389/fonc.2021.665360

DDX60 Is Associated With Glioma Malignancy and Serves as a Potential Immunotherapy Biomarker
Cited by: 7
Author(s): Jingwen Zhang, Minjie Fu, Mengli Zhang, Jinsen Zhang, Zunguo Du, Hongyi Zhang, Wei Hua, Ying Mao
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2020.00835

Development and Validation of a 12-Gene Immune Relevant Prognostic Signature for Lung Adenocarcinoma Through Machine Learning Strategies
Cited by: 14
Author(s): Xue Li, Guoshu Bi, Cheng Zhan, Yi Zhang, Yunfeng Yuan, Hong Fan
Software Mentions: 8
Published: over 6 years ago

10.1155/2021/7488188

m6A-Related lncRNA to Develop Prognostic Signature and Predict the Immune Landscape in Bladder Cancer
Cited by: 28
Author(s): Zuwei Li, Yuwu Li, Weizhang Zhong, Peiyuan Huang
Software Mentions: 8
Published: about 5 years ago

10.3389/fcvm.2020.575275

Reactivation of Atrium Genes Is a Primer for Heart Infarction or Regeneration
Cited by: 1
Author(s): Yang Zhen
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41598-021-92913-6

Ganoderma lucidum promotes sleep through a gut microbiota-dependent and serotonin-involved pathway in mice
Cited by: 14
Author(s): Chunyan Yao, Zhiyuan Wang, Huiyong Jiang, Yan Ren, Qin Huang, Yin Wang, Hui Xie, Ying Zou, Ying Yu, Longxian Lv
Software Mentions: 8
Published: about 5 years ago

10.3390/ijms22073618

Transcriptome Analyses of Myometrium from Fibroid Patients Reveals Phenotypic Differences Compared to Non-Diseased Myometrium
Cited by: 9
Author(s): Emmanuel N. Paul, Gregory W. Burns, Tyler J. Carpenter, Joshua Grey, Asgerally T. Fazleabas, Jose M. Teixeira
Software Mentions: 8
Published: over 5 years ago

10.1186/s12957-021-02328-w

Identification of novel antioxidant gene signature to predict the prognosis of patients with gastric cancer
Cited by: 10
Author(s): Jianhua Wu, Xuan Wang, Nan Wang, Li Ma, Xin Xie, Hao Zhang, Huafeng Kang, Zhangjian Zhou
Software Mentions: 8
Published: about 5 years ago

10.3389/fcimb.2020.00194

Delineation and Modulation of the Natural Killer Cell Transcriptome in Rhesus Macaques During ZIKV and SIV Infections
Cited by: 2
Author(s): Malika Aïd, Daniel R. Ram, Steven E. Bosinger, Dan H. Barouch, R. Keith Reeves
Software Mentions: 8
Published: over 6 years ago

10.1111/jcmm.16712

Cytokeratin 5 and cytokeratin 20 inversely correlate with tumour grading in Ta non‐muscle‐invasive bladder cancer
Cited by: 7
Author(s): Tim Muilwijk, Murat Akand, Frank Van der Aa, Vincent De Coninck, Marc Claessens, Robert Hente, Markus Eckstein, Yves Allory, Louis Libbrecht, Steven Joniau, Thomas Gevaert
Software Mentions: 8
Published: about 5 years ago

10.3389/fmicb.2020.01327

Microbial and Geochemical Dynamics of an Aquifer Stimulated for Microbial Induced Calcite Precipitation (MICP)
Cited by: 11
Author(s): Juliette Ohan, Sina Saneiyan, J. Lee, Andrew W. Bartlow, Dimitrios Ntarlagiannis, Susan E. Burns, Frederick S. Colwell
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-93570-5

Three dimensional modeling of biologically relevant fluid shear stress in human renal tubule cells mimics in vivo transcriptional profiles
Cited by: 18
Author(s): Emily J. Ross, Emily R. Gordon, Hanna Sothers, Roshan Darji, Oakley Baron, Dustin W. Haithcock, Balabhaskar Prabhakarpandian, Kapil Pant, R Myers, Sara J. Cooper, Nancy J. Cox
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-017-02685-1

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora
Cited by: 73
Author(s): Rachel M. Wright, Carly D. Kenkel, Carly E. Dunn, Erin N. Shilling, Line K. Bay, Mikhail V. Matz
Software Mentions: 8
Published: over 9 years ago

10.3390/ijms22105354

Genome-Wide Characterization of WRKY Transcription Factors Revealed Gene Duplication and Diversification in Populations of Wild to Domesticated Barley
Cited by: 7
Author(s): Jinhong Kan, Guang Gao, Qiang He, Qian Gao, Congcong Jiang, Sunny Ahmar, Jun Liu, Jing Zhang, Ping Yang
Software Mentions: 8
Published: over 5 years ago

10.3390/ijms21072337

Differential Targeting of Gr-MDSCs, T Cells and Prostate Cancer Cells by Dactolisib and Dasatinib
Cited by: 10
Author(s): Guoqiang Lü, Zhijian Jin, Xin Lü
Software Mentions: 8
Published: over 6 years ago

10.3389/fonc.2021.630905

Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients
Cited by: 14
Author(s): Fan Yuan, Xingchen Li, Li Tian, Jianliu Wang
Software Mentions: 8
Published: over 5 years ago

10.1007/s00572-020-01001-6

Phosphate availability and ectomycorrhizal symbiosis with Pinus sylvestris have independent effects on the Paxillus involutus transcriptome
Cited by: 6
Author(s): Christina Paparokidou, Jonathan R. Leake, David J. Beerling, Stephen A. Rolfe
Software Mentions: 7
Published: almost 6 years ago

10.1002/edm2.191

Sex and oestrogen receptor β have modest effects on gene expression in the mouse brain posterior cortex
Cited by: 1
Author(s): Jasmine A. Fels, Gabriella Casalena, Giovanni Manfredi
Software Mentions: 7
Published: almost 6 years ago

10.7717/peerj.11430

Identification of Vitamin D-related gene signature to predict colorectal cancer prognosis
Cited by: 1
Author(s): Luping Bu, Fengxing Huang, Mengting Li, Yanan Peng, Haizhou Wang, Meng Zhang, Linfa Peng, Lan Liu, Qiu Zhao
Software Mentions: 7
Published: over 5 years ago

10.3390/ijms221910451

Differentiation of the High Night Temperature Response in Leaf Segments of Rice Cultivars with Contrasting Tolerance
Cited by: 1
Author(s): Stephanie Schaarschmidt, Ulrike Glaubitz, Alexander Erban, Joachim Kopka, Ellen Zuther
Software Mentions: 7
Published: almost 5 years ago

10.3389/fcell.2021.726716

Identification of an Immune-Related Long Noncoding RNA Pairs Model to Predict Survival and Immune Features in Gastric Cancer
Cited by: 8
Author(s): Shenglei Song, Shuhao Liu, Zhewei Wei, Xinghan Jin, Deli Mao, Yulong He, Bo Li, Changhua Zhang
Software Mentions: 7
Published: about 5 years ago

10.3389/fcell.2021.659080

ANXA1 as a Prognostic and Immune Microenvironmental Marker for Gliomas Based on Transcriptomic Analysis and Experimental Validation
Cited by: 8
Author(s): Zhongxiao Lin, Ming‐Shien Wen, Enxing Yu, Xiao Yan Lin, Hua Wang, Jiayu Chen, Chaojie Yao, Hengli Zhang, Junnan Ru, Kankai Wang, Ying Zhang, Lijie Huang, Qichuan Zhuge, Shuxu Yang
Software Mentions: 7
Published: about 5 years ago

10.3389/fonc.2020.596318

Single-Cell RNA-Seq Analysis Reveals Microenvironmental Infiltration of Plasma Cells and Hepatocytic Prognostic Markers in HCC With Cirrhosis
Cited by: 40
Author(s): Siwen Zhang, Zhenhao Liu, Dan Wu, Lanming Chen, Lu Xie
Software Mentions: 7
Published: almost 6 years ago

10.21203/rs.3.rs-380803/v1

Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19
Cited by: 9
Author(s): Alexandra Tsitsiklis, Beth Shoshana Zha, Ashley Byrne, Catherine DeVoe, Sophia Levan, Elze Rackaityte, Sara Sunshine, Eran Mick, Rajani Ghale, Alejandra Jauregui, Norma Neff, Aartik Sarma, Paula Hayakawa Serpa, Thomas Deiss, Amy Kistler, Sidney Carrillo, K. Mark Ansel, Aleksandra Leligdowicz, S. Christenson, Nicola L. Jones, Benjamin Wu, Spyros Darmanis, Michael A. Matthay, Susan V. Lynch, Joseph L. DeRisi, Carolyn M. Hendrickson, Kirsten N. Kangelaris, Matthew F. Krummel, Prescott G. Woodruff, David J. Erle, O. A. Rosenberg, Carolyn S. Calfee, Charles Langelier
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2021.709796

Helicobacter pylori Infection–Related Long Non-Coding RNA Signatures Predict the Prognostic Status for Gastric Cancer Patients
Cited by: 7
Author(s): Zhuoyuan Xin, Luping Zhang, Mingqing Liu, Yachen Wang, Yingli Zhang, Wenjie Zhao, Yongxiao Sun, Lei Shi, Na Xu, Nan Zhang, Hong Xu
Software Mentions: 7
Published: about 5 years ago

10.3389/fimmu.2021.639634

Development and Validation of a Novel Prognostic Model for Acute Myeloid Leukemia Based on Immune-Related Genes
Cited by: 10
Author(s): Ran Li, Zuoyou Ding, Peng Jin, Shishuang Wu, Ge Jiang, Rufang Xiang, Wenfang Wang, Zhen Jin, Xiaoyang Li, Kai Xue, Xiaolu Wu, Junmin Li
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.00033

PLXNC1 Enhances Carcinogenesis Through Transcriptional Activation of IL6ST in Gastric Cancer
Cited by: 9
Author(s): Jie Chen, Haining Liu, Jinggui Chen, Bo Sun, Jianghong Wu, Chunyan Du
Software Mentions: 7
Published: over 6 years ago

10.3389/fcell.2021.624053

“All-In-One” Genetic Tool Assessing Endometrial Receptivity for Personalized Screening of Female Sex Steroid Hormones
Cited by: 7
Author(s): Pavel Deryabin, А. П. Домнина, Inga V. Gorelova, M. V. Rulev, М. А. Petrosyan, Nikolay Nikolsky, Aleksandra Borodkina
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2020.585943

Understanding Microbial Community Dynamics in Up-Flow Bioreactors to Improve Mitigation Strategies for Oil Souring
Cited by: 5
Author(s): Avishek Dutta, Ben Smith, Thomas Goldman, Leanne Walker, Matthew Streets, Bob Eden, Reinhard Dirmeier, Jeff S. Bowman
Software Mentions: 7
Published: almost 6 years ago

10.1111/jcmm.15472

Transcriptomic landscape profiling of metformin‐treated healthy mice: Implication for potential hypertension risk when prophylactically used
Cited by: 4
Author(s): Yuhuan Meng, Rui Xiang, Han Yan, Yiran Zhou, Yuntao Hu, Jichun Yang, Yuan Zhou, Qinghua Cui
Software Mentions: 7
Published: over 6 years ago

10.3390/jcm9061974

Dysregulation of microRNA Modulatory Network in Abdominal Aortic Aneurysm
Cited by: 13
Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Paulina Chmiel, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 7
Published: over 6 years ago

10.3389/fphar.2021.613805

Prolonged Medical Cannabis Treatment is Associated With Quality of Life Improvement and Reduction of Analgesic Medication Consumption in Chronic Pain Patients
Cited by: 16
Author(s): Joshua Aviram, Gil M. Lewitus, Yelena Vysotski, Ben Yellin, Paula Berman, Anna Shapira, David Meiri
Software Mentions: 7
Published: over 5 years ago

10.1128/mBio.01432-18

A Natural History of Actinic Keratosis and Cutaneous Squamous Cell Carcinoma Microbiomes
Cited by: 31
Author(s): David Wood, Nancy Lachner, Jean-Marie Tan, Stephanie Tang, Nicola Angel, Antonia Laino, Richard Linedale, Kim‐Anh Lê Cao, Mark Morrison, Ian H. Frazer, H. Peter Soyer, Philip Hugenholtz
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-021-92036-y

Capitalizing on transcriptome profiling to optimize and identify targets for promoting early murine folliculogenesis in vitro
Cited by: 6
Author(s): Andrea Jones, Beatriz Peñalver Bernabé, Vasantha Padmanabhan, Jun Li, Ariella Shikanov
Software Mentions: 7
Published: over 5 years ago

10.1111/jcmm.15252

CA9 transcriptional expression determines prognosis and tumour grade in tongue squamous cell carcinoma patients
Cited by: 9
Author(s): Chenyu Guan, Dai-qiao Ouyang, Yongjie Qiao, Kan Li, Guanghui Zheng, Xiaomei Lao, Sien Zhang, Guiqing Liao, Yujie Liang
Software Mentions: 7
Published: over 6 years ago

10.3389/fonc.2021.654185

Overexpression of GINS4 Is Associated With Tumor Progression and Poor Survival in Hepatocellular Carcinoma
Cited by: 6
Author(s): Ziying Zhang, Peng Chen, Hui Xie, Peiguo Cao
Software Mentions: 7
Published: over 5 years ago

10.3389/fpls.2021.637115

The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype
Cited by: 9
Author(s): Tatiana Arias, Chad E. Niederhuth, Paula McSteen, J. Chris Pires
Software Mentions: 7
Published: over 5 years ago

10.1515/tnsci-2021-0002

IKBIP is a novel EMT-related biomarker and predicts poor survival in glioma
Cited by: 9
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Aijun Shan
Software Mentions: 7
Published: over 5 years ago

10.7150/jca.47557

Identification of a prognostic 4-mRNA signature in laryngeal squamous cell carcinoma
Cited by: 1
Author(s): Cheng Zhang, Bin Shen, Xinwei Chen, Shang Gao, Xiaohua Ying, Pin Dong
Software Mentions: 7
Published: over 5 years ago

10.1128/mBio.03601-20

Ketogenic Diets Induced Glucose Intolerance and Lipid Accumulation in Mice with Alterations in Gut Microbiota and Metabolites
Cited by: 15
Author(s): Yue Li, Yifan Yang, Jing Zhang, Tianyi Jiang, Ziyi Zhang, Zhiyi Wang, Mengxue Gong, Liping Zhao, Chenhong Zhang
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2021.681946

Prognostic Biomarkers on a Competitive Endogenous RNA Network Reveals Overall Survival in Triple-Negative Breast Cancer
Cited by: 3
Author(s): Wenxing Qin, Qi Feng, Jia Li, Ping Li, Yuan‐Sheng Zang
Software Mentions: 7
Published: over 5 years ago

10.3390/vaccines7030113

TIV Vaccination Modulates Host Responses to Influenza Virus Infection that Correlate with Protection against Bacterial Superinfection
Cited by: 5
Author(s): Angela Choi, Ioanna Christopoulou, Xavier Saelens, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: about 7 years ago

10.3389/fmicb.2021.631889

DWV Infection in vitro Using Honey Bee Pupal Tissue
Cited by: 3
Author(s): Yunfei Wu, Xuye Yuan, Jing Li, Tatsuhiko Kadowaki
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.601901

The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Environmental Conditions of Arctic Lagoons
Cited by: 0
Author(s): Kristina Baker, Colleen T. E. Kellogg, J. W. McClelland, Kenneth H. Dunton, Byron C. Crump
Software Mentions: 7
Published: over 5 years ago

10.1186/s40793-020-00365-8

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond
Cited by: 14
Author(s): Jessica Chopyk, Daniel J. Nasko, Sarah Allard, Anthony Bui, Mihai Pop, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: almost 6 years ago

10.1016/j.virol.2021.03.019

Zika virus infection during pregnancy protects against secondary infection in the absence of CD8+ cells
Cited by: 3
Author(s): Blake Schouest, Brandon J Beddingfield, Margaret H. Gilbert, Rudolf P. Bohm, Faith Schiro, Pyone P. Aye, Antonito T. Panganiban, Diogo M. Magnani, Nicholas J. Maness
Software Mentions: 7
Published: about 5 years ago

10.3390/ijms21134727

Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies
Cited by: 16
Author(s): Maximilian Fuchs, Fabian Philipp Kreutzer, Lorenz A. Kapsner, Saskia Mitzka, Annette Just, Filippo Perbellini, Cesare M. Terracciano, Xiaoyan Ke, Robert Geffers, Christian Bogdan, Hans‐Ulrich Prokosch, Jan Fiedler, Thomas Thum, Meik Kunz
Software Mentions: 7
Published: about 6 years ago

10.3389/fimmu.2020.580934

Redox Regulator GLRX Is Associated With Tumor Immunity in Glioma
Cited by: 14
Author(s): Yuanhao Chang, Guanzhang Li, You Zhai, Lijie Huang, Yuemei Feng, Di Wang, Wei Zhang, Huimin Hu
Software Mentions: 7
Published: almost 6 years ago

10.15252/emmm.201910812

Synthetic lethality between <scp>VPS</scp> 4A and <scp>VPS</scp> 4B triggers an inflammatory response in colorectal cancer
Cited by: 26
Author(s): Ewelina Szymańska, Paulina Nowak, Krzysztof Kolmus, Magdalena Cybulska, Krzysztof Goryca, Edyta Derezińska-Wołek, Anna Szumera‐Ciećkiewicz, Marta Brewinska‐Olchowik, Aleksandra Grochowska, Katarzyna Piwocka, Monika Prochorec‐Sobieszek, Michał Mikula, Marta Miączyńska
Software Mentions: 7
Published: over 6 years ago

10.3389/fimmu.2021.645320

Effects of Hypoxia in Intestinal Tumors on Immune Cell Behavior in the Tumor Microenvironment
Cited by: 14
Author(s): Luping Zhang, Shaokun Wang, Yachen Wang, Wenjie Zhao, Yingli Zhang, Nan Zhang, Hong Xu
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.11894

Identification of a circRNA-miRNA-mRNA regulatory network for exploring novel therapeutic options for glioma
Cited by: 4
Author(s): Yi He, Yihong Chen, Yuxin Tong, Wenyong Long, Qing Liu
Software Mentions: 7
Published: about 5 years ago

10.15252/emmm.201809910

Overcoming resistance to anabolic SARM therapy in experimental cancer cachexia with an HDAC inhibitor
Cited by: 16
Author(s): Sophia G. Liva, Yu Chou Tseng, Anees M. Dauki, Michael G. Sovic, Trang Vu, Sally E. Henderson, Yi Chiu Kuo, Jason Benedict, Xiaoli Zhang, Bryan Remaily, Samuel K. Kulp, Moray J. Campbell, Tanios Bekaii‐Saab, Mitch A. Phelps, Ching Shih Chen, Christopher C. Coss
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.9602

The role of m6A-related genes in the prognosis and immune microenvironment of pancreatic adenocarcinoma
Cited by: 58
Author(s): Rong Tang, Yiyin Zhang, Chen Liang, Jin Xu, Qingcai Meng, Jie Hua, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Software Mentions: 7
Published: almost 6 years ago

10.15252/embj.2018101220

The interactome of <scp>KRAB</scp> zinc finger proteins reveals the evolutionary history of their functional diversification
Cited by: 58
Author(s): Pierre-Yves Helleboid, Moritz Heusel, Julien Duc, Cécile Piot, Christian W. Thorball, Andrea Coluccio, Julien Pontis, Michaël Imbeault, Priscilla Turelli, Ruedi Aebersold, Didier Trono
Software Mentions: 7
Published: about 7 years ago

10.3389/fonc.2021.733595

Identification of Glycolysis-Related lncRNAs and the Novel lncRNA WAC-AS1 Promotes Glycolysis and Tumor Progression in Hepatocellular Carcinoma
Cited by: 22
Author(s): Xigang Xia, Hao Zhang, Peng Xia, Yu Zhu, Jie Liu, Kequan Xu, Yufeng Yuan
Software Mentions: 7
Published: about 5 years ago

10.3389/fcell.2021.637400

Integrated Bioinformatical Analysis Identifies GIMAP4 as an Immune-Related Prognostic Biomarker Associated With Remodeling in Cervical Cancer Tumor Microenvironment
Cited by: 16
Author(s): Fangfang Xu, Jiacheng Shen, Shaohua Xu
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.ppat.1009130

Infection of human Nasal Epithelial Cells with SARS-CoV-2 and a 382-nt deletion isolate lacking ORF8 reveals similar viral kinetics and host transcriptional profiles
Cited by: 90
Author(s): Akshamal M Gamage, Kai Sen Tan, Wharton Chan, Jing Liu, Chee Wah Tan, Yew Kwang Ong, Mark Thong, Anand Kumar Andiappan, Danielle E. Anderson, De Yun Wang, Lin‐Fa Wang
Software Mentions: 7
Published: almost 6 years ago

10.1007/s11274-019-2737-3

The vaginal microbial communities of healthy expectant Brazilian mothers and its correlation with the newborn’s gut colonization
Cited by: 15
Author(s): Priscila Caroline Thiago Dobbler, Volker Mai, Renato S. Procianoy, Rita de Cássia dos Santos Silveira, Andrea Corso, Luiz Fernando Würdig Roesch
Software Mentions: 7
Published: almost 7 years ago

10.3390/ijms21176028

Developmental Methylome of the Medicinal Plant Catharanthus roseus Unravels the Tissue-Specific Control of the Monoterpene Indole Alkaloid Pathway by DNA Methylation
Cited by: 12
Author(s): Thomas Dugé de Bernonville, Stéphane Maury, Alain Delaunay, Christian Daviaud, Cristian Chaparro, Jörg Tost, Sarah E. O’Connor, Vincent Courdavault
Software Mentions: 7
Published: about 6 years ago

10.1038/srep41531

Transcriptomic analysis of common carp anterior kidney during Cyprinid herpesvirus 3 infection: Immunoglobulin repertoire and homologue functional divergence
Cited by: 23
Author(s): Matthew J. Neave, Agus Sunarto, Kenneth A. McColl
Software Mentions: 7
Published: over 9 years ago

10.3389/fonc.2021.584884

Tumor Microenvironmental Competitive Endogenous RNA Network and Immune Cells Act as Robust Prognostic Predictor of Acute Myeloid Leukemia
Cited by: 16
Author(s): Yuanrong Cheng, Xiaoran Wang, Peiyan Qi, Chengxiu Liu, Shoubi Wang, Qi Wan, Yurun Liu, Yangfeng Su, Lin Jin, Ying Liu, Chaoyang Li, Xuan Sang, Yang Liu, Chang Liu, Hucheng Duan, Zhichong Wang
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.ppat.1007870

Antigenic cartography of immune responses to Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1)
Cited by: 6
Author(s): James Tuju, Margaret J. Mackinnon, Abdirahman Abdi, Henry Karanja, Jennifer Musyoki, George M. Warimwe, Evelyn Gitau, Kevin Marsh, Peter C. Bull, Britta C. Urban
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-021-93918-x

Probiotic supplementation reduces inflammatory profiles but does not prevent oral immune perturbations during SIV infection
Cited by: 4
Author(s): Rhianna Jones, Kyle Kroll, Courtney Broedlow, Luca Schifanella, Scott Smith, Brady Hueber, Spandan V. Shah, Daniel R. Ram, Cordelia Manickam, Valerie Varner, Nichole R. Klatt, R. Keith Reeves
Software Mentions: 7
Published: about 5 years ago

10.1016/j.cell.2019.09.035

Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity
Cited by: 322
Author(s): Chrysothemis C. Brown, Herman Gudjonson, Yuri Pritykin, Deeksha Deep, Vincent Philippe Lavallée, Alejandra Mendoza, Rachel M. Fromme, Linas Mažutis, Charlotte E. Ariyan, Christina Leslie, Dana Pe’er, Alexander Y. Rudensky
Software Mentions: 7
Published: almost 7 years ago

10.3389/fmolb.2021.665222

Identification of the m6A RNA Methylation Regulators WTAP as a Novel Prognostic Biomarker and Genomic Alterations in Cutaneous Melanoma
Cited by: 12
Author(s): Ziyi Feng, Ting Wang, Xin Su, Shu Guo
Software Mentions: 7
Published: about 5 years ago

10.7554/eLife.62800

Mapping immune variation and var gene switching in naive hosts infected with Plasmodium falciparum
Cited by: 18
Author(s): Kathryn H. Milne, Alasdair Ivens, Adam J. Reid, Magda E. Lotkowska, Áine O’Toole, Geetha Sankaranarayanan, Diana Muñoz Sandoval, Wiebke Nahrendorf, Clément Regnault, Nick J. Edwards, Sarah E. Silk, Ruth Payne, Angela M. Minassian, Navin Venkatraman, Mandy Sanders, Adrian V. S. Hill, Michael P. Barrett, Matthew Berriman, Simon J. Draper, J. Alexandra Rowe, Philip J. Spence
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.69975

Notch-induced endoplasmic reticulum-associated degradation governs mouse thymocyte β−selection
Cited by: 8
Author(s): Xia Liu, Jingjing Yu, Longyong Xu, Katharine Umphred-Wilson, Fanglue Peng, Yao Ding, Brendan M Barton, Xiangdong Lv, Michael Y Zhao, Shengyi Sun, Yuning Hong, Ling Qi, Stanley Adoro, Xi Chen
Software Mentions: 7
Published: about 5 years ago

10.7554/eLife.52511

ERK3/MAPK6 controls IL-8 production and chemotaxis
Cited by: 23
Author(s): Katarzyna Bogucka, Malvika Pompaiah, Fédérico Marini, Harald Binder, Gregory S. Harms, Manuel Kaulich, Matthias Klein, Christian Michel, Markus P. Radsak, Sebastian Rosigkeit, Peter Grimminger, Hansjörg Schild, Krishnaraj Rajalingam
Software Mentions: 7
Published: over 6 years ago

10.3390/cancers11060759

Detection of Epstein-Barr Virus Infection in Non-Small Cell Lung Cancer
Cited by: 31
Author(s): Fayez Kheir, Mengmeng Zhao, Michael J. Strong, Yi Yu, Asuka Nanbo, Erik K. Flemington, Gilbert F. Morris, Krzysztof Reiss, Li Li, Zhen Lin
Software Mentions: 7
Published: over 7 years ago

10.7554/eLife.58019

Isolation and transcriptomic analysis of Anopheles gambiae oenocytes enables the delineation of hydrocarbon biosynthesis
Cited by: 17
Author(s): Linda Grigoraki, Xavier Grau‐Bové, Henrietta Carrington Yates, Gareth Lycett, Hilary Ranson
Software Mentions: 7
Published: over 6 years ago

10.7554/eLife.11215

Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells
Cited by: 35
Author(s): João D. Dias, Tiago Rito, Elena Torlai Triglia, Alexander Kukalev, Carmelo Ferrai, Mita Chotalia, Emily Brookes, Hiroshi Kimurâ, Ana Pombo
Software Mentions: 7
Published: almost 11 years ago

10.1186/s12935-021-02086-5

PODN is a prognostic biomarker and correlated with immune infiltrates in osteosarcoma
Cited by: 9
Author(s): Feng Yao, Zhenxin Zhu, Jun Wen, Fu Yong Zhang, Zheng Zhang, Lei Zhu, Guang Hao Su, Quan Yuan, Yun Fang Zhen, Xiao Dong Wang
Software Mentions: 7
Published: about 5 years ago

10.7554/eLife.30952

Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals
Cited by: 158
Author(s): Inge Kühl, María Miranda, Ilian Atanassov, Irina Kuznetsova, Yvonne Hinze, Arnaud Mourier, Aleksandra Filipovska, Nils‐Göran Larsson
Software Mentions: 7
Published: almost 9 years ago

10.1186/s12935-021-01774-6

Tumor mutation burden in connection with immune-related survival in uterine corpus endometrial carcinoma
Cited by: 14
Author(s): Ling Zhao, Xueshu Fu, Xiling Han, Yu Yao, Yaping Ye, Jun Gao
Software Mentions: 7
Published: over 5 years ago

10.18632/aging.102200

Identification and validation of four hub genes involved in the plaque deterioration of atherosclerosis
Cited by: 12
Author(s): Peipei Chen, Yuexin Chen, Wei Wu, Lianfeng Chen, Xufei Yang, Shuyang Zhang
Software Mentions: 7
Published: about 7 years ago

10.3389/fimmu.2021.634127

Immunophenotyping of Peripheral Blood Mononuclear Cells in Septic Shock Patients With High-Dimensional Flow Cytometry Analysis Reveals Two Subgroups With Differential Responses to Immunostimulant Drugs
Cited by: 4
Author(s): Ya Wang, Brian Gloss, Benjamin Tang, Suat Dervish, Brigitte Santner-Nanan, Christina Whitehead, Kristy Masters, Kristen K. Skarratt, Sally Teoh, Stephen D. Schibeci, Nicole Fewings, Chrystelle Brignone, Frédéric Triebel, David R. Booth, Anthony S. McLean, Marek Nalos
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2020.560336

Functional Gene Expression in Shark Bay Hypersaline Microbial Mats: Adaptive Responses
Cited by: 15
Author(s): Matthew A. Campbell, Kliti Grice, Pieter T. Visscher, Therese Morris, Hon Lun Wong, Richard Allen White, Brendan P. Burns, Marco J. L. Coolen
Software Mentions: 7
Published: almost 6 years ago

10.1155/2020/2415374

Identifying 4 Novel lncRNAs as Potential Biomarkers for Acute Rejection and Graft Loss of Renal Allograft
Cited by: 7
Author(s): Zedan Zhang, Yanlin Tang, Hongkai Zhuang, Enyu Lin, Lu Xie, Xiaoqiang Feng, Jiayi Zeng, Yanjun Liu, Jiumin Liu, Yuming Yu
Software Mentions: 7
Published: almost 6 years ago

10.1186/s40168-021-01025-w

Protists as main indicators and determinants of plant performance
Cited by: 51
Author(s): Sai Guo, Wu Xiong, Xinnan Hang, Zhilei Gao, Zixuan Jiao, Hongjun Liu, Yani Mo, Nan Zhang, George A. Kowalchuk, Rong Li, Stefan Geisen
Software Mentions: 7
Published: over 5 years ago

10.3389/fimmu.2020.01166

Non-sterilizing, Infection-Permissive Vaccination With Inactivated Influenza Virus Vaccine Reshapes Subsequent Virus Infection-Induced Protective Heterosubtypic Immunity From Cellular to Humoral Cross-Reactive Immune Responses
Cited by: 6
Author(s): Angela Choi, Lorena Itatí Ibáñez, Shirin Strohmeier, Florian Krammer, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: over 6 years ago

10.1186/s12864-021-07766-0

Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation
Cited by: 0
Author(s): Erika Berenice Martínez-Ruiz, Myriel Cooper, Jimena Barrero-Canosa, Mindia Haryono, Irina Bessarab, Rohan B. H. Williams, Ulrich Szewzyk
Software Mentions: 7
Published: over 5 years ago

10.7150/ijms.47224

Construction and Validation of a Protein Prognostic Model for Lung Squamous Cell Carcinoma
Cited by: 5
Author(s): Xisheng Fang, Xia Liu, Chengyin Weng, Yong Wu, Baoxiu Li, Haibo Mao, Mingyu Guan, Lin Lü, Guolong Liu
Software Mentions: 7
Published: over 6 years ago

10.7554/eLife.12845

Two FGFRL-Wnt circuits organize the planarian anteroposterior axis
Cited by: 90
Author(s): M. Lucila Scimone, Lauren E. Cote, Travis Rogers, Peter W. Reddien
Software Mentions: 7
Published: over 10 years ago

10.1186/s12935-019-1028-2

Expression profile analysis identifies IER3 to predict overall survival and promote lymph node metastasis in tongue cancer
Cited by: 10
Author(s): Fang Xiao, Yinhua Dai, Yujiao Hu, Mengmeng Lu, Qun Dai
Software Mentions: 7
Published: almost 7 years ago

10.1042/BSR20200492

Profiles of overall survival-related gene expression-based risk signature and their prognostic implications in clear cell renal cell carcinoma
Cited by: 3
Author(s): Zihao He, Tuo Deng, Xiaolu Duan, Guohua Zeng
Software Mentions: 7
Published: about 6 years ago

10.7554/eLife.34031

Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity
Cited by: 39
Author(s): Amy E. Pohodich, Hari Krishna Yalamanchili, Ayush T. Raman, Ying-Wooi Wan, Michael C. Gundry, Shuang Hao, Haijing Jin, Jianrong Tang, Zhandong Liu, Huda Y. Zoghbi
Software Mentions: 7
Published: over 8 years ago

10.3389/fgene.2021.678436

Development of an Immune-Related LncRNA Prognostic Signature for Glioma
Cited by: 8
Author(s): Yudong Cao, Hecheng Zhu, Jun Tan, Yin Wu, Quanwei Zhou, Zhaoqi Xin, Zhaoping Wu, Zhipeng Jiang, Youwei Guo, Yirui Kuang, Can Li, Ming Zhao, Xingjun Jiang, Jian Peng, Chao Ren
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0258157

Dynamically expressed genes provide candidate viability biomarkers in a model coccidian
Cited by: 4
Author(s): Matthew S. Tucker, Celia O’Brien, Mark C. Jenkins, Benjamin M. Rosenthal
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-019-52294-3

Oct4-mediated reprogramming induces embryonic-like microRNA expression signatures in human fibroblasts
Cited by: 16
Author(s): Lucie Pešková, Kateřina Černá, Jan Oppelt, Marek Mráz, Tomáš Bárta
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-020-64794-8

Integrative genomics approach identifies molecular features associated with early-stage ovarian carcinoma histotypes
Cited by: 12
Author(s): Hanna Engqvist, Toshima Z. Parris, Jana Biermann, Elisabeth Werner Rönnerman, Peter Larsson, Karin Sundfeldt, Anikó Kovács, Per Karlsson, Khalil Helou
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0147249

Cell and Microvesicle Urine microRNA Deep Sequencing Profiles from Healthy Individuals: Observations with Potential Impact on Biomarker Studies
Cited by: 43
Author(s): Iddo Z. Ben‐Dov, Veronica M. Whalen, Béatrice Goilav, Klaas E.A. Max, Thomas Tuschl
Software Mentions: 7
Published: over 10 years ago

10.1371/journal.pone.0241777

Soil nematode functional diversity, successional patterns, and indicator taxa associated with vertebrate decomposition hotspots
Cited by: 7
Author(s): Lois S. Taylor, Gary L. Phillips, Ernest C. Bernard, Jennifer M. DeBruyn
Software Mentions: 7
Published: almost 6 years ago

10.1155/2021/2628824

A Potential ceRNA Network for Neurological Damage in Preterm Infants
Cited by: 7
Author(s): Hui‐Zi Jin, Xinlan Liang, Zhenyu Cai
Software Mentions: 7
Published: about 5 years ago

10.1016/j.ccell.2019.08.008

An Evolutionarily Conserved Function of Polycomb Silences the MHC Class I Antigen Presentation Pathway and Enables Immune Evasion in Cancer
Cited by: 314
Author(s): Marian L. Burr, Christina E Sparbier, Kah Lok Chan, Yih-Chih Chan, Ariena Kersbergen, Enid Y.N. Lam, Elizabeth Azidis-Yates, Dane Vassiliadis, Charles C. Bell, Omer Gilan, Susan Jackson, Lavinia Tan, Stephen Q. Wong, Sebastian Hollizeck, Ewa M. Michalak, Hannah V. Siddle, Michael T. McCabe, Rab K. Prinjha, Glen R Guerra, Benjamin Solomon, Shahneen Sandhu, Sarah‐Jane Dawson, Paul A. Beavis, Richard W. Tothill, Carleen Cullinane, Paul J. Lehner, Kate D. Sutherland, Mark A. Dawson
Software Mentions: 7
Published: almost 7 years ago

10.18632/aging.203208

miRNAs generated from Meg3-Mirg locus are downregulated during aging
Cited by: 1
Author(s): Ana-Mihaela Lupan, Evelyn Gabriela Rusu, Mihai Bogdan Preda, Catalina Iolanda Marinescu, Cristina Ivan, Alexandrina Burlacu
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-41940-5

The ciliary Frizzled-like receptor Tmem67 regulates canonical Wnt/β-catenin signalling in the developing cerebellum via Hoxb5
Cited by: 15
Author(s): Zakia Abdelhamed, Dina Abdelmottaleb, Mohammed E. El‐Asrag, Subaashini Natarajan, Gabrielle Wheway, Chris F. Inglehearn, Carmel Toomes, Colin A. Johnson
Software Mentions: 7
Published: over 7 years ago

10.1186/s12864-018-4689-7

Gene copy number variation in natural populations of Plasmodium falciparum in Eastern Africa
Cited by: 12
Author(s): Joan Simam, Martin K. Rono, Joyce M. Ngoi, Mary Nyonda, Sachel Mok, Kevin Marsh, Zbynek Bozdech, Margaret J. Mackinnon
Software Mentions: 7
Published: over 8 years ago

10.1080/19490976.2021.1921924

The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes
Cited by: 15
Author(s): Fergus W. J. Collins, Calum J. Walsh, Beatriz Gómez‐Sala, E. Guijarro-García, David J. Stokes, Klara B. Jakobsdóttir, Kristján Kristjánsson, Finlay Burns, Paul D. Cotter, Mary C. Rea, Colin Hill, R. Paul Ross
Software Mentions: 7
Published: over 5 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572