Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2020.560336

https://doi.org/10.3389/fmicb.2020.560336

Cited by: 15
Author(s): Matthew A. Campbell, Kliti Grice, Pieter T. Visscher, Therese Morris, Hon Lun Wong, Richard Allen White, Brendan P. Burns, Marco J. L. Coolen
Published: over 3 years ago

Software Mentions 7

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: phyloseq

Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: pvclust

Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
Papers that mentioned: 442

pypi: eggnog-mapper

Fast functional annotation of novel sequences using eggNOG orthology assignments.
Papers that mentioned: 41

pypi: STAMP

A graphical software package for analyzing taxonomic and functional profiles.
Papers that mentioned: 1,190