Papers: 10.1186/s13059-020-02144-7
https://doi.org/10.1186/s13059-020-02144-7
1200 high-quality metagenome-assembled genomes from the rumen of African cattle and their relevance in the context of sub-optimal feeding
Cited by: 32
Author(s): Toby Wilkinson, Daniel Korir, Moses Ogugo, Robert D. Stewart, Mick Watson, Edith Paxton, John P. Goopy, Christelle Robert
Published: almost 5 years ago
Software Mentions 7
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
Very Likely Science (100)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census dataPapers that mentioned: 1,702
Very Likely Science (75)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
Very Likely Science (100)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and PermutationsPapers that mentioned: 6,292
Very Likely Science (85)
Very Likely Science (75)
Very Likely Science (100)
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomesPapers that mentioned: 144
Very Likely Science (100)