Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cell.2019.09.035

https://doi.org/10.1016/j.cell.2019.09.035

Cited by: 322
Author(s): Chrysothemis C. Brown, Herman Gudjonson, Yuri Pritykin, Deeksha Deep, Vincent Philippe Lavallée, Alejandra Mendoza, Rachel M. Fromme, Linas Mažutis, Charlotte E. Ariyan, Christina Leslie, Dana Pe’er, Alexander Y. Rudensky
Published: over 4 years ago

Software Mentions 7

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
pypi: custom
Custom self carry
Papers that mentioned: 1,363
pypi: grep
String lookup has never been prettier.
Papers that mentioned: 57
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203