cran: ggpubr | Projects | Ecosyste.ms: Papers

10.7554/eLife.54074

A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
Cited by: 89
Author(s): Annette D. Allen, Megan C Neville, Sebastian Birtles, Vincent Croset, Christoph Daniel Treiber, Scott Waddell, Stephen F. Goodwin
Software Mentions: 9
Published: about 4 years ago

10.18632/aging.203290

Expression mode and prognostic value of FXYD family members in colon cancer
Cited by: 8
Author(s): Ming Jin, Hui Zhang, Jun Yang, Zheng Zhao, Kaitai Liu
Software Mentions: 9
Published: almost 3 years ago

10.1073/pnas.2100542118

Self-mediated positive selection of T cells sets an obstacle to the recognition of nonself
Cited by: 9
Author(s): Balázs Koncz, Gergő Mihály Balogh, Benjamin Tamás Papp, Leó Asztalos, Lajos Kemény, Máté Manczinger
Software Mentions: 9
Published: over 2 years ago

10.1080/21655979.2020.1822715

A novel prognostic models for identifying the risk of hepatocellular carcinoma based on epithelial-mesenchymal transition-associated genes
Cited by: 15
Author(s): Chen Xiong, Guifu Wang, Dou‐Sheng Bai
Software Mentions: 9
Published: over 4 years ago

10.3389/fonc.2020.578809

Identification and Verification on Prognostic Index of Lower-Grade Glioma Immune-Related LncRNAs
Cited by: 7
Author(s): Jing Wen, Youjun Wang, Lili Luo, Peng Lu, Caixia Chen, Jian Guo, Yunlong Ge, Wenjun Li, Xin Jin
Software Mentions: 9
Published: over 3 years ago

10.1093/molbev/msaa266

Genomic Adaptations to Salinity Resist Gene Flow in the Evolution of Floridian Watersnakes
Cited by: 10
Author(s): Rhett M. Rautsaw, Tristan D. Schramer, Rachel Acuña, Lindsay N Arick, Mark DiMeo, Kathryn P. Mercier, Michael Schrum, Andrew J. Mason, Mark J. Margres, Jason L. Strickland, Christopher L. Parkinson
Software Mentions: 9
Published: over 3 years ago

10.1186/s13040-021-00267-6

eQTpLot: a user-friendly R package for the visualization of colocalization between eQTL and GWAS signals
Cited by: 11
Author(s): Theodore G. Drivas, Anastasia Lucas, Marylyn D. Ritchie
Software Mentions: 9
Published: almost 3 years ago

10.3390/ijerph18084052

The Impact of Temperature on the Risk of COVID-19: A Multinational Study
Cited by: 5
Author(s): Ya‐Chen Yang, Jason Lee
Software Mentions: 9
Published: about 3 years ago

10.1155/2020/5069204

Dysregulated Expression and Methylation Analysis Identified TLX1NB as a Novel Recurrence Marker in Low-Grade Gliomas
Cited by: 1
Author(s): Hongzhou Duan, Zuozhen Yang, Chen Li, Jiayong Zhang, Shengli Shen, Changwei Yuan, Yingjin Wang
Software Mentions: 9
Published: over 3 years ago

10.1186/s13045-020-00941-y

A single-cell survey of cellular hierarchy in acute myeloid leukemia
Cited by: 39
Author(s): Jinliang Wu, Yanyu Xiao, Jie Sun, Huiyu Sun, Haide Chen, Yuanyuan Zhu, Haidong Fu, Chengxuan Yu, E Weigao, Shih‐Wei Lai, Lifeng Ma, Jiaqi Li, Lijiang Fei, Mengmeng Jiang, Jingjing Wang, Fang Ye, Renying Wang, Ziyu Zhou, Guodong Zhang, Tingyue Zhang, Qiong Ding, Zou Wang, Sheng Hao, Lizhen Liu, Weiyan Zheng, Jingsong He, Weijia Huang, Yungui Wang, Jin Xie, Tiefeng Li, Tao Cheng, Xiaoping Han, He Huang, Guoji Guo
Software Mentions: 9
Published: over 3 years ago

10.1186/s40621-021-00327-9

Non-fatal senior pickleball and tennis-related injuries treated in United States emergency departments, 2010–2019
Cited by: 6
Author(s): Harold B. Weiss, Jacob Dougherty, Charles DiMaggio
Software Mentions: 9
Published: about 3 years ago

10.1111/1744-7917.12606

The price of protection: a defensive endosymbiont impairs nymph growth in the bird cherry‐oat aphid, <i>Rhopalosiphum padi</i>
Cited by: 30
Author(s): Daniel J. Leybourne, Jorunn I. B. Bos, Tracy A. Valentine, Alison J. Karley
Software Mentions: 9
Published: almost 6 years ago

10.1080/19490976.2021.1957408

Imbalance of the intestinal virome and altered viral-bacterial interactions caused by a conditional deletion of the vitamin D receptor
Cited by: 14
Author(s): Jilei Zhang, Yongguo Zhang, Yinglin Xia, Jun Sun
Software Mentions: 9
Published: over 3 years ago

10.3390/ani9080580

Validation of an Ultra-Wideband Tracking System for Recording Individual Levels of Activity in Broilers
Cited by: 20
Author(s): M. van der Sluis, B. de Klerk, E.D. Ellen, Y. de Haas, Thijme Hijink, T.B. Rodenburg
Software Mentions: 9
Published: over 4 years ago

10.3390/microorganisms9051009

Honeybees Exposure to Natural Feed Additives: How Is the Gut Microbiota Affected?
Cited by: 9
Author(s): Daniele Alberoni, Loredana Baffoni, Chiara Braglia, Francesca Gaggìa, Diana Di Gioia
Software Mentions: 9
Published: about 3 years ago

10.1371/journal.pone.0222547

Endothelial dysfunction and low-grade inflammation in the transition to renal replacement therapy
Cited by: 13
Author(s): April C.E. van Gennip, Natascha J. H. Broers, Karlien J. ter Meulen, Bernard Canaud, Maarten H. L. Christiaans, T. Cornelis, M. Gelens, Marc Hermans, Constantijn Konings, Jeroen B. van der Net, Frank M. van der Sande, Casper G. Schalkwijk, Frank Stifft, Joris J. J. M. Wirtz, Jeroen P. Kooman, Remy J H Martens
Software Mentions: 9
Published: over 4 years ago

10.1186/s13148-019-0678-1

Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis
Cited by: 22
Author(s): Lara Kular, Maria Needhamsen, Milena Z. Adzemovic, Tatiana V. Kramarova, David Gomez-Cabrero, Ewoud Ewing, Eliane Piket, Jesper Tegnér, Stephan Beck, Fredrik Piehl, Lou Brundin, Maja Jagodic
Software Mentions: 9
Published: almost 5 years ago

10.1093/gbe/evaa191

Coexpression Clusters and Allele-Specific Expression in Metabolism-Based Herbicide Resistance
Cited by: 17
Author(s): Darci A. Giacomini, Eric Patterson, Anita Küpper, Roland Beffa, Todd A. Gaines, Patrick J. Tranel
Software Mentions: 8
Published: over 3 years ago

10.1093/toxsci/kfaa058

Blinded, Multicenter Evaluation of Drug-induced Changes in Contractility Using Human-induced Pluripotent Stem Cell-derived Cardiomyocytes
Cited by: 44
Author(s): Umber Saleem, Berend J. van Meer, Puspita A Katili, Nurul A N Mohd Yusof, Ingra Mannhardt, Ana Krotenberg Garcia, Leon G.J. Tertoolen, Tessa de Korte, Maria L. H. Vlaming, Karen McGlynn, Jessica Nebel, Anthony Bahinski, Kate Harris, Eric I. Rossman, Xiaoping Xu, Francis L. Burton, Godfrey L. Smith, Peter Clements, Christine L. Mummery, Thomas Eschenhagen, Arne Hansen, Chris Denning
Software Mentions: 8
Published: about 4 years ago

10.1371/journal.pone.0200925

PNPase knockout results in mtDNA loss and an altered metabolic gene expression program
Cited by: 12
Author(s): Eriko Shimada, Fasih M. Ahsan, Mahta Nili, Dian Huang, Sean Atamdede, Tara TeSlaa, Dana Case, Xiang Yu, Brian D. Gregory, Benjamin J. Perrin, Carla M. Koehler, Michael A. Teitell
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmicb.2021.654108

Gut Microbiota of Drosophila subobscura Contributes to Its Heat Tolerance and Is Sensitive to Transient Thermal Stress
Cited by: 22
Author(s): Angélica Jaramillo, Luis E. Castañeda
Software Mentions: 8
Published: about 3 years ago

10.1371/journal.pone.0247836

Integrated analysis of RNA-binding proteins in thyroid cancer
Cited by: 4
Author(s): Zhen Jing, Zhe Song, Wenjie Su, Qun Zeng, Jiacen Li, Qi Sun
Software Mentions: 8
Published: about 3 years ago

10.3389/fmicb.2020.594928

Analysis of Indian SARS-CoV-2 Genomes Reveals Prevalence of D614G Mutation in Spike Protein Predicting an Increase in Interaction With TMPRSS2 and Virus Infectivity
Cited by: 45
Author(s): Sunil K. Raghav, Arup Ghosh, Jyotirmayee Turuk, Satish Kumar, Atimukta Jha, Swati Madhulika, Manasi Priyadarshini, Viplov Kumar Biswas, P. Sushree Shyamli, Balveer Singh, Neha Singh, Deepika Singh, Ankita Datey, Kiran Avula, Shuchi Smita, Jyotsnamayee Sabat, Debdutta Bhattacharya, Jaya Singh Kshatri, Dileep Vasudevan, Amol Ratnakar Suryawanshi, Rupesh Dash, Shantibhusan Senapati, Tushar Kant Beuria, Roy Swain, Soma Chattopadhyay, Gulam Hussain Syed, Anshuman Dixit, Punit Prasad, Sanghamitra Pati, Ajay Parida
Software Mentions: 8
Published: over 3 years ago

10.3390/genes10110937

NF-YA Overexpression in Lung Cancer: LUSC
Cited by: 28
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Diletta Dolfini, Roberto Mantovani
Software Mentions: 8
Published: over 4 years ago

10.3390/metabo11070463

Sex-Specific Relationship between the Cardiorespiratory Fitness and Plasma Metabolite Patterns in Healthy Humans—Results of the KarMeN Study
Cited by: 5
Author(s): Sina Kistner, Maik Döring, Ralf Krüger, M Rist, Christoph H. Weinert, Diana Bunzel, Benedikt Merz, Katrin Radloff, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 8
Published: almost 3 years ago

10.3390/metabo10120494

Metabolic Drug Response Phenotyping in Colorectal Cancer Organoids by LC-QTOF-MS
Cited by: 17
Author(s): Sylvia K. Neef, Nicole Janssen, Stefan Winter, Svenja K. Wallisch, Ute Hofmann, Marc H. Dahlke, Matthias Schwab, Thomas E. Mürdter, Mathias Haag
Software Mentions: 8
Published: over 3 years ago

10.1186/s42523-021-00096-2

Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals
Cited by: 65
Author(s): Davide Bozzi, Jacob Agerbo Rasmussen, Christian Carøe, Harald Sveier, Kristian Nordøy, M. Thomas P. Gilbert, Morten T. Limborg
Software Mentions: 8
Published: about 3 years ago

10.1186/s12863-020-00936-1

Separating two tightly linked species-defining phenotypes in Bactrocera with hybrid recombinant analysis
Cited by: 7
Author(s): Heng Lin Yeap, Siu Fai Lee, Freya Robinson, Roslyn Mourant, J. A. Sved, Michael Frommer, Alexie Papanicolaou, Owain Edwards, John G. Oakeshott
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pgen.1009744

The Integrity of the HMR complex is necessary for centromeric binding and reproductive isolation in Drosophila
Cited by: 25
Author(s): A. Lukacs, Andreas W. Thomae, P. Krueger, Tamás Schauer, Anuroop Venkateswaran Venkatasubramani, Natalia Y. Kochanova, Wasim Aftab, Rupam Choudhury, Ignasi Forné, Axel Imhof
Software Mentions: 8
Published: over 2 years ago

10.3390/ma13112650

Teicoplanin-Modified HPLC Column as a Source of Experimental Parameters for Prediction of the Anticonvulsant Activity of 1,2,4-Triazole-3-Thiones by the Regression Models
Cited by: 1
Author(s): Jolanta Flieger, Anna Orzeł, Anna Kowalska-Kępczyńska, Magdalena Pizoń, Hanna Trębacz, Dariusz Majerek, Tomasz Plech, Wojciech Płaziński
Software Mentions: 8
Published: almost 4 years ago

10.1016/j.xcrm.2020.100073

Safety and COVID-19 Symptoms in Individuals Recently Vaccinated with BCG: a Retrospective Cohort Study
Cited by: 72
Author(s): Simone J.C.F.M. Moorlag, Rosanne C. van Deuren, Cornelis H. van Werkhoven, Martin Jaeger, Priya A. Debisarun, Esther Taks, Vera P. Mourits, Valerie A C M Koeken, L. Charlotte J. de Bree, Thijs ten Doesschate, Maartje C. P. Cleophas, Sanne P. Smeekens, Marije Oosting, Frank L. van de Veerdonk, Leo A. B. Joosten, Jaap ten Oever, J.W.M. van der Meer, Nigel Curtis, Péter Aaby, Christine Stabell-Benn, Evangelos J. Giamarellos‐Bourboulis, Marc J. M. Bonten, Reinout van Crevel, Mihai G. Netea
Software Mentions: 8
Published: almost 4 years ago

10.1186/s12862-021-01890-x

Experimental increase of worker diversity benefits brood production in ants
Cited by: 3
Author(s): Marina N. Psalti, Dustin Gohlke, Romain Libbrecht
Software Mentions: 8
Published: over 2 years ago

10.1371/journal.pbio.3001007

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
Cited by: 180
Author(s): Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas
Software Mentions: 8
Published: over 3 years ago

10.3390/plants10050840

Development of an Image Analysis Pipeline to Estimate Sphagnum Colony Density in the Field
Cited by: 1
Author(s): Willem Q. M. van de Koot, Larissa J. J. van Vliet, Wei‐Lun Chen, John Doonan, Cândida Nibau
Software Mentions: 8
Published: about 3 years ago

10.3389/fmicb.2021.627437

A Taxon-Wise Insight Into Rock Weathering and Nitrogen Fixation Functional Profiles of Proglacial Systems
Cited by: 4
Author(s): Gilda Varliero, Alexandre M. Anesio, Gary Barker
Software Mentions: 8
Published: over 2 years ago

10.1038/s41375-020-01096-y

Copy number evolution and its relationship with patient outcome—an analysis of 178 matched presentation-relapse tumor pairs from the Myeloma XI trial
Cited by: 21
Author(s): James Croft, Sidra Ellis, Amy L. Sherborne, Kim A. Sharp, Amy Price, Matthew Jenner, Mark T. Drayson, Roger G. Owen, Sally Chown, Jindriska Lindsay, Kamaraj Karunanithi, Hannah Hunter, Walter M. Gregory, Faith E. Davies, Gareth J. Morgan, Gordon Cook, Lilit Atanesyan, Suvi Savola, David A. Cairns, Graham Jackson, Richard S. Houlston, Martin Kaiser
Software Mentions: 8
Published: over 3 years ago

10.1186/s12859-020-3538-2

CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments
Cited by: 39
Author(s): H. Atakan Ekiz, Christopher J. Conley, W. Zac Stephens, Ryan M. O’Connell
Software Mentions: 8
Published: about 4 years ago

10.1038/s41598-021-83888-5

A novel approach for microRNA in situ hybridization using locked nucleic acid probes
Cited by: 6
Author(s): Isabella Worlewenut Paulsen, Micheal Bzorek, John Elmerdahl Olsen, Birgitte Grum-Schwensen, Jesper T. Troelsen, Ole Birger Pedersen
Software Mentions: 8
Published: about 3 years ago

10.1186/s12859-021-04130-7

Correlation AnalyzeR: functional predictions from gene co-expression correlations
Cited by: 35
Author(s): Henry E. Miller, Alexander J.R. Bishop
Software Mentions: 8
Published: about 3 years ago

10.3389/fcell.2021.710207

Immunological Value of Prognostic Signature Based on Cancer Stem Cell Characteristics in Hepatocellular Carcinoma
Cited by: 14
Author(s): Qianhui Xu, Hao Xu, Shaohuai Chen, Wen Huang
Software Mentions: 8
Published: almost 3 years ago

10.1186/s40170-020-00220-x

Metabolite AutoPlotter - an application to process and visualise metabolite data in the web browser
Cited by: 18
Author(s): Matthias Pietzke, Alexei Vazquez
Software Mentions: 8
Published: almost 4 years ago

10.3389/fcell.2021.651575

An N6-Methyladenosine-Related Gene Set Variation Score as a Prognostic Tool for Lung Adenocarcinoma
Cited by: 8
Author(s): Huijuan Zhang, Jing Hu, Aina Liu, Huajun Qu, Fenge Jiang, Congcong Wang, Steven Mo, Ping Sun
Software Mentions: 8
Published: almost 3 years ago

10.3390/nu13072372

Assessment of Adherence to the Healthy Food Pyramid in Pregnant and Lactating Women
Cited by: 5
Author(s): Andrea Gila-Díaz, Ariadna Witte Castro, Gloria Herranz Carrillo, Pratibha Singh, William Yakah, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 8
Published: almost 3 years ago

10.3389/fmicb.2020.626713

Temporal Dynamics of Cloacal Microbiota in Adult Laying Chickens With and Without Access to an Outdoor Range
Cited by: 6
Author(s): Janneke Schreuder, Francisca C. Velkers, Alex Bossers, Ruth Bouwstra, W.F. de Boer, Pim van Hooft, J.A. Stegeman, Stephanie D. Jurburg
Software Mentions: 8
Published: over 3 years ago

10.3390/nu12030658

Iron, Zinc and Phytic Acid Retention of Biofortified, Low Phytic Acid, and Conventional Bean Varieties When Preparing Common Household Recipes
Cited by: 36
Author(s): Marijke Hummel, Elise F. Talsma, Víctor Taleon, Luis Alfonso Correa Londoño, Galina Brychkova, Sonia Gallego, Bodo Raatz, Charles Spillane
Software Mentions: 8
Published: about 4 years ago

10.7717/peerj.6362

Empirical analysis and modeling of Argos Doppler location errors in Romania
Cited by: 4
Author(s): Laurenţiu Rozyłowicz, Florian Bodescu, Cristiana Maria Ciocănea, Athanasios Alexandru Gavrilidis, Steluţa Manolache, Mihaela Matache, Iulia V. Miu, Ionut C Moale, Andreea Niţă, Viorel D. Popescu
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2021.706915

A Novel Nine-lncRNA Risk Signature Correlates With Immunotherapy in Hepatocellular Carcinoma
Cited by: 8
Author(s): Ye Nie, Jianhui Li, Wenlong Wu, Dongnan Guo, Xinjun Lei, Tianchen Zhang, Yanfang Wang, Zhenzhen Mao, Xuan Zhang, Wenjie Song
Software Mentions: 8
Published: over 2 years ago

10.1038/s42003-020-01156-0

Artificial eyespots on cattle reduce predation by large carnivores
Cited by: 12
Author(s): Cameron Radford, J. Weldon McNutt, Tracey L. Rogers, Ben Maslen, Neil R. Jordan
Software Mentions: 8
Published: almost 4 years ago

10.1155/2021/8892479

PDZ Binding Kinase/T-LAK Cell-Derived Protein Kinase Plays an Oncogenic Role and Promotes Immune Escape in Human Tumors
Cited by: 4
Author(s): Tingting Feng, Yan Zhang, Sunbin Ling, Chenyang Xu, Yingqi Lyu, Tingting Lu, Xinyuan Liu, Ying Liu, Yiming Wan, Zhong Huang, Dan Su
Software Mentions: 8
Published: over 2 years ago

10.1186/s12957-021-02328-w

Identification of novel antioxidant gene signature to predict the prognosis of patients with gastric cancer
Cited by: 10
Author(s): Jianhua Wu, Xuan Wang, Nan Wang, Li Ma, Xin Xie, Hao Zhang, Huafeng Kang, Zhangjian Zhou
Software Mentions: 8
Published: almost 3 years ago

10.3390/biom10081179

Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal Lambs
Cited by: 2
Author(s): Narciso M. Quijada, Raúl Bodas, José M. Lorenzo, Stephan Schmitz‐Esser, David Rodrı́guez-Làzaro, Marta Hernández
Software Mentions: 8
Published: almost 4 years ago

10.3390/ijms22094696

Metabolic Profiling of VOCs Emitted by Bacteria Isolated from Pressure Ulcers and Treated with Different Concentrations of Bio-AgNPs
Cited by: 3
Author(s): Fernanda Monedeiro, Viorica Railean, Maciej Monedeiro-Milanowski
Software Mentions: 8
Published: about 3 years ago

10.3390/v13061019

Human Retrotransposons and the Global Shutdown of Homeostatic Innate Immunity by Oncolytic Parvovirus H-1PV in Pancreatic Cancer
Cited by: 2
Author(s): Matthias Neulinger-Muñoz, Dominik Schaack, Svetlana Grekova, Andrea S. Bauer, Thomas Giese, Gabriel Alexander Salg, Elisa Espinet, Barbara Leuchs, Anette Heller, Jürg P. F. Nüesch, Miriam Schenk, Michael Volkmar, Nathalia A. Giese
Software Mentions: 8
Published: almost 3 years ago

10.1038/s41598-020-70596-9

Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
Cited by: 13
Author(s): Xinling Wang, Yu Yang, Yong Huang, Zhu Ming-shuang, Rigao Chen, Zhanghui Liao, Shipeng Yang
Software Mentions: 8
Published: almost 4 years ago

10.1038/s41598-020-61643-6

Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer
Cited by: 7
Author(s): Xia Li, Paul Van Hummelen, Matthew Kubit, Ho‐Joon Lee, John Bell, Susan M. Grimes, Christina Wood-Bouwens, Stephanie Greer, Tyler Barker, Derrick S. Haslem, James M. Ford, Gail Fulde, Hanlee P. Ji, Lincoln Nadauld
Software Mentions: 8
Published: about 4 years ago

10.1155/2020/5717498

An Integrated Autophagy-Related Long Noncoding RNA Signature as a Prognostic Biomarker for Human Endometrial Cancer: A Bioinformatics-Based Approach
Cited by: 14
Author(s): Ziwei Wang, Jun Zhang, Yan Liu, Rong Zhao, Xing Zhou, Hongbo Wang
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-020-71211-7

Larval pesticide exposure impacts monarch butterfly performance
Cited by: 19
Author(s): Paola Olaya‐Arenas, Kayleigh C Hauri, Michael E. Scharf, Ian Kaplan
Software Mentions: 8
Published: over 3 years ago

10.3389/fonc.2020.568469

Aberrant RNA Splicing Events Driven by Mutations of RNA-Binding Proteins as Indicators for Skin Cutaneous Melanoma Prognosis
Cited by: 4
Author(s): Chao Mei, Pei-Yuan Song, Wei Zhang, Hong‐Hao Zhou, Xi Li, Zhao‐Qian Liu
Software Mentions: 8
Published: over 3 years ago

10.1186/s12967-021-02744-2

Combined lymphocyte/monocyte count, D-dimer and iron status predict COVID-19 course and outcome in a long-term care facility
Cited by: 20
Author(s): Flavia Biamonte, Cirino Botta, Maria Mazzitelli, Salvatore Rotundo, Enrico Maria Trecarichi, Daniela Foti, Carlo Torti, Giuseppe Viglietto, Daniele Torella, Francesco Costanzo
Software Mentions: 8
Published: over 3 years ago

10.3389/fonc.2021.654388

MYD88 Is a Potential Prognostic Gene and Immune Signature of Tumor Microenvironment for Gliomas
Cited by: 13
Author(s): Qinglong Guo, Xing Xiao, Jinsen Zhang
Software Mentions: 8
Published: about 3 years ago

10.3389/fnins.2021.689188

Identification of the Potential Gene Regulatory Networks and Therapeutics in Aged Mice With Postoperative Neurocognitive Disorder
Cited by: 9
Author(s): Wensi Wu, Yongbo Peng, Jiaxin Zhou, Xiaojun Zhang, Lin Cao, Wei-Jye Lin, Yanan Lu, Jing Wen, Zhi Wang
Software Mentions: 8
Published: almost 3 years ago

10.1038/s41418-021-00817-9

Prolonged SARS-CoV-2 RNA virus shedding and lymphopenia are hallmarks of COVID-19 in cancer patients with poor prognosis
Cited by: 27
Author(s): Anne-Gaëlle Goubet, Agathe Dubuisson, Arthur Géraud, F-X. Danlos, Safae Terrisse, Carolina Alves Costa Silva, Damien Drubay, Lea Touri, Marion Picard, Marine Mazzenga, Aymeric Silvin, Garett Dunsmore, Yacine Haddad, Eugénie Pizzato, Pierre Ly, Caroline Flament, Cléa Melenotte, Éric Solary, Michaëla Fontenay, Gabriel Garcia, Corinne Balleyguier, Nathalie Lassau, Markus Maeurer, Claudia Grajeda‐Iglesias, Nitharsshini Nirmalathasan, Fanny Aprahamian, Sylvère Durand, Oliver Kepp, Gladys Ferrere, Cassandra Thelemaque, Imran Lahmar, Jean Eudes Fahrner, Lydia Meziani, Abdelhakim Ahmed–Belkacem, Nadia Saïdani, Bernard La Scola, Didier Raoult, Stéphanie Gentile, Sébastien Cortaredona, Giuseppe Ippolito, Benjamin Lelouvier, Alain Roulet, Fabrice André, Fabrice Barlési, Jean Charles Soria, Caroline Pradon, Emmanuelle Gallois, Fanny Pommeret, Emeline Colomba, Florent Ginhoux, Suzanne Kazandjian, Arielle Elkrief, Bertrand Routy, Makoto Miyara, Guy Gorochov, Éric Deutsch, Laurence Albigès, Annabelle Stoclin, Bertrand Gachot, Anne Florin, Mansouria Merad, Florian Scotté, Souad Assaad, Guido Kroemer, Jean Yves Blay, Aurélien Marabelle, Frank Griscelli, Laurence Zitvogel, Lisa Derosa
Software Mentions: 8
Published: almost 3 years ago

10.1155/2021/9920234

Bioinformatic Analysis Reveals Central Role for Tumor-Infiltrating Immune Cells in Uveal Melanoma Progression
Cited by: 6
Author(s): Mieszko Lachota, Anton Lennikov, Karl‐Johan Malmberg, Radosław Zagożdżon
Software Mentions: 8
Published: almost 3 years ago

10.3390/cancers12030756

Analysis of Dual Class I Histone Deacetylase and Lysine Demethylase Inhibitor Domatinostat (4SC-202) on Growth and Cellular and Genomic Landscape of Atypical Teratoid/Rhabdoid
Cited by: 23
Author(s): Mariah M. Hoffman, Jessica S. Zylla, Somshuvra Bhattacharya, Kristin Calar, Timothy W. Hartman, Ratan D. Bhardwaj, W. Keith Miskimins, Pilar de la Puente, Etienne Z. Gnimpieba, Shanta M. Messerli
Software Mentions: 8
Published: about 4 years ago

10.3390/cancers12113089

CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the Pancreas
Cited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: over 3 years ago

10.7150/jca.49266

Establishment of the Prognostic Index Reflecting Tumor Immune Microenvironment of Lung Adenocarcinoma Based on Metabolism-Related Genes
Cited by: 13
Author(s): Jianguo Zhang, Jianzhong Zhang, Cheng Yuan, Yuan Luo, Yangyi Li, Panpan Dai, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 8
Published: over 4 years ago

10.3390/microorganisms9050915

Lactobacillus reuteri Colonisation of Extremely Preterm Infants in a Randomised Placebo-Controlled Trial
Cited by: 13
Author(s): Johanne E. Spreckels, Erik Wejryd, Giovanna Marchini, Baldvin Jónsson, Dylan de Vries, Maria C. Jenmalm, Eva Landberg, Eva Sverremark-Ekström, Magalí Martí, Thomas Abrahamsson
Software Mentions: 8
Published: about 3 years ago

10.1101/2020.11.25.20235150

T cell and antibody functional correlates of severe COVID-19
Cited by: 8
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-019-47117-4

Using a trait-based approach to understand the efficiency of a selective device in a multispecific fishery
Cited by: 7
Author(s): Maud Mouchet, Manon Poirson, Fabien Morandeau, Camille Vogel, Sonia Méhault, Dorothée Kopp
Software Mentions: 8
Published: over 4 years ago

10.1371/journal.pone.0249148

Ethnically biased microsatellites contribute to differential gene expression and glutathione metabolism in Africans and Europeans
Cited by: 5
Author(s): Nicholas A. Kinney, Lin Kang, Harpal Bains, Elizabeth Lawson, Mesam Husain, Kumayl Husain, Inderjit Sandhu, Yongdeok Shin, Javan K. Carter, Ramu Anandakrishnan, Pawel Michalak, Harold R. Garner
Software Mentions: 8
Published: about 3 years ago

10.3390/microorganisms8091265

Modulation of Gut Microbiota in Korean Navy Trainees following a Healthy Lifestyle Change
Cited by: 10
Author(s): Young Hun Jung, Setu Bazie Tagele, HyunWoo Son, Jerald Conrad Ibal, Dorsaf Kerfahi, Hyunju Yun, Bora Lee, Clara Yongjoo Park, Eun Soo Kim, Sang-Jun Kim, Jae‐Ho Shin
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0257471

Deciphering the low abundance microbiota of presumed aseptic hip and knee implants
Cited by: 2
Author(s): Charles Carr, Hannah Wilcox, Jeremy P. Burton, Sharanya Menon, Kait F. Al, David B. O’Gorman, Brent A. Lanting, Edward M. Vasarhelyi, Michael E. Neufeld, Matthew G. Teeter
Software Mentions: 8
Published: over 2 years ago

10.3390/e23060695

Knowledge Discovery from Medical Data and Development of an Expert System in Immunology
Cited by: 3
Author(s): Małgorzata Pac, Irina Mikutskaya, Jan J. Mulawka
Software Mentions: 8
Published: almost 3 years ago

10.18632/aging.202670

A novel panel based on immune infiltration and tumor mutational burden for prognostic prediction in hepatocellular carcinoma
Cited by: 5
Author(s): Chengzhi Xie, Hewei Wu, Tao Pan, Xingrong Zheng, Xiaoàn Yang, Genglin Zhang, Yunwen Lian, Jiaxin Lin, Liang Peng
Software Mentions: 8
Published: about 3 years ago

10.3389/fgene.2020.568223

Taxonomic Novelty and Distinctive Genomic Features of Hot Spring Cyanobacteria
Cited by: 32
Author(s): Jaime Alcorta, Tomás Alarcón-Schumacher, Óscar Rivero Salgado, Beatriz Dı́ez
Software Mentions: 8
Published: over 3 years ago

10.3390/ijms22073296

Selective Activation of CNS and Reference PPARGC1A Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases
Cited by: 5
Author(s): Markus Kwik, Stefan Hainzl, Jan Oppelt, Boris Tichý, Ulrich Koller, Emanuele Bernardinelli, Markus J. Steiner, Greta Zara, Charity Nofziger, Serge Weis, Markus Paulmichl, Silvia Dossena, Wolfgang Patsch, Selma M. Soyal
Software Mentions: 8
Published: about 3 years ago

10.1186/s40168-020-00869-y

Topography of the respiratory tract bacterial microbiota in cattle
Cited by: 36
Author(s): Christopher McMullen, Trevor W. Alexander, Renaud Léguillette, Matthew L. Workentine, Edouard Timsit
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12864-019-6162-7

Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation
Cited by: 11
Author(s): Citlali Fonseca-García, Alejandra E. Zayas, Jesús Montiel, Noreide Nava, Federico Sánchez, Carmen Quinto
Software Mentions: 7
Published: over 4 years ago

10.1186/s13059-021-02466-0

Acute depletion of CTCF rewires genome-wide chromatin accessibility
Cited by: 26
Author(s): Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, Chunliang Li
Software Mentions: 7
Published: over 2 years ago

10.3389/fmicb.2020.577474

Dietary Emulsifiers Alter Composition and Activity of the Human Gut Microbiota in vitro, Irrespective of Chemical or Natural Emulsifier Origin
Cited by: 25
Author(s): Lisa Miclotte, Kim De Paepe, Leen Rymenans, Chris Callewaert, Jeroen Raes, Andreja Rajković, John Van Camp, Tom Van de Wiele
Software Mentions: 7
Published: over 3 years ago

10.1002/ece3.7332

Bottom‐up effects of fungicides on tadpoles of the European common frog ( <i>Rana temporaria</i> )
Cited by: 1
Author(s): Mirco Bundschuh, Jochen P. Zubrod, Theo Wernicke, Marco Konschak, Leon Werner, Carsten A. Brühl, Patrick Baudy, Ralf Schulz
Software Mentions: 7
Published: about 3 years ago

10.18632/aging.102872

Transplant of microbiota from long-living people to mice reduces aging-related indices and transfers beneficial bacteria
Cited by: 26
Author(s): Yinfeng Chen, Siyuan Zhang, Bo Zeng, Jiangchao Zhao, Mingyao Yang, Mingwang Zhang, Yan Li, Qingyong Ni, De Wu, Ying Liu
Software Mentions: 7
Published: about 4 years ago

10.3389/fgene.2021.678436

Development of an Immune-Related LncRNA Prognostic Signature for Glioma
Cited by: 8
Author(s): Yudong Cao, Hecheng Zhu, Jun Tan, Yin Wu, Quanwei Zhou, Zhaoqi Xin, Zhaoping Wu, Zhipeng Jiang, Youwei Guo, Yirui Kuang, Can Li, Ming Zhao, Xingjun Jiang, Jian Peng, Chao Ren
Software Mentions: 7
Published: almost 3 years ago

10.1038/s41398-020-01176-8

The placenta protects the fetal circulation from anxiety-driven elevations in maternal serum levels of brain-derived neurotrophic factor
Cited by: 7
Author(s): Hayley Dingsdale, Xinsheng Nan, Samantha M. Garay, Annett Mueller, Lorna Sumption, Pedro Chacón-Fernández, Isabel Martinez‐Garay, Cédric Ghevaert, Yves‐Alain Barde, John Roshan
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-95668-2

Short-term cell death in tissues of Pulsatilla vernalis seeds from natural and ex situ conserved populations
Cited by: 0
Author(s): Katarzyna M. Zielińska, Andrzej Kaźmierczak, Ewa Michalska
Software Mentions: 7
Published: almost 3 years ago

10.1186/s12864-021-07744-6

The effect of methanol fixation on single-cell RNA sequencing data
Cited by: 19
Author(s): Xinlei Wang, Yu Liu, Angela Ruohao Wu
Software Mentions: 7
Published: almost 3 years ago

10.1038/s41598-021-98926-5

Quantitative assessment of multiple fish species around artificial reefs combining environmental DNA metabarcoding and acoustic survey
Cited by: 22
Author(s): Masaaki Sato, Nariaki Inoue, Ryogen Nambu, Naoki Furuichi, Tsutomu Imaizumi, Masayuki Ushio
Software Mentions: 7
Published: over 2 years ago

10.3389/fpsyg.2020.599094

Co-occurrence Patterns of Character Strengths and Measured Core Virtues in German-Speaking Adults
Cited by: 6
Author(s): Willibald Ruch, Sonja Heintz, Lisa Wagner
Software Mentions: 7
Published: over 3 years ago

10.3390/genes11020198

NF-YA Overexpression in Lung Cancer: LUAD
Cited by: 17
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Valentina Semeghini, Valentina Andrioletti, Roberto Mantovani, Diletta Dolfini
Software Mentions: 7
Published: over 4 years ago

10.3390/s20133612

Assessing the Activity of Individual Group-Housed Broilers Throughout Life Using a Passive Radio Frequency Identification System—A Validation Study
Cited by: 20
Author(s): M. van der Sluis, Y. de Haas, B. de Klerk, T.B. Rodenburg, E.D. Ellen
Software Mentions: 7
Published: almost 4 years ago

10.3389/fgene.2020.612037

An Immune Gene-Related Five-lncRNA Signature for to Predict Glioma Prognosis
Cited by: 20
Author(s): Xinzhuang Wang, Ming Gao, Junyi Ye, Qiuyi Jiang, Quan Yang, Cheng Zhang, Shengtao Wang, Jian Zhang, Ligang Wang, Jianing Wu, Hua Zhan, Xu Hou, Dayong Han, Shen Zhao
Software Mentions: 7
Published: over 3 years ago

10.1186/s13007-021-00791-w

Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture
Cited by: 3
Author(s): Amir Mahboubi, Nicolas Delhomme, Sara Lea Häggström, Johannes Hanson
Software Mentions: 7
Published: over 2 years ago

10.3389/fmicb.2021.662159

Effect of Fecal Microbiota Transplantation Combined With Mediterranean Diet on Insulin Sensitivity in Subjects With Metabolic Syndrome
Cited by: 20
Author(s): Annefleur M. Koopen, Eduardo L. Almeida, Ilias Attaye, Julia J. Witjes, Elena Rampanelli, Soumia Majait, E. Marleen Kemper, Johannes H.M. Levels, Alinda W.M. Schimmel, Hilde Herrema, Torsten P. M. Scheithauer, Werner Frei, Lars Ove Dragsted, Bolette Hartmann, Jens J. Holst, Paul W. O’Toole, Albert K. Groen, Max Nieuwdorp
Software Mentions: 7
Published: almost 3 years ago

10.3389/fphys.2018.01553

High-Intensity Exercise Mitigates Cardiovascular Deconditioning During Long-Duration Bed Rest
Cited by: 21
Author(s): Martina Anna Maggioni, Paolo Castiglioni, Giampiero Merati, Katharina Brauns, Hanns‐Christian Gunga, Stefan Mendt, Oliver Opatz, Lea C. Rundfeldt, Mathias Steinach, Anika Werner, Alexander Stahn
Software Mentions: 7
Published: over 5 years ago

10.18632/aging.202269

Immune profile of the tumor microenvironment and the identification of a four-gene signature for lung adenocarcinoma
Cited by: 15
Author(s): Tao Fan, Mark Zhu, Li-Yu Wang, Yu Liu, He Tian, Zheng Yang, Fengwei Tan, Nan Sun, Chunxiang Li, Jie He
Software Mentions: 7
Published: over 3 years ago

10.3389/fmolb.2021.705008

CUX1 Facilitates the Development of Oncogenic Properties Via Activating Wnt/β-Catenin Signaling Pathway in Glioma
Cited by: 2
Author(s): Fang Fěng, Zongqing Zhao, Yunfei Zhou, Yalin Cheng, Xiujie Wu, Xueyuan Heng
Software Mentions: 7
Published: almost 3 years ago

10.3389/fped.2020.623184

Timing of Newborn Blood Collection Alters Metabolic Disease Screening Performance
Cited by: 13
Author(s): Gang Peng, Yishuo Tang, Tina M. Cowan, Hongyu Zhao, Curt Scharfe
Software Mentions: 7
Published: over 3 years ago

10.1038/s41422-020-00412-6

Single-cell transcriptomic atlas of primate cardiopulmonary aging
Cited by: 76
Author(s): Shuai Ma, Shuhui Sun, Jiaming Li, Yanling Fan, Jing Qu, Liang Sun, Si Wang, Yiyuan Zhang, Shanshan Yang, Zunpeng Liu, Zeming Wu, Sheng Zhang, Qiaoran Wang, Ai Zheng, Shuguang Duo, Yang Yu, Juan Carlos Izpisúa Belmonte, Piu Chan, Qi Zhou, Moshi Song, Weiqi Zhang, Guang Hui Liu
Software Mentions: 7
Published: over 3 years ago

10.1186/s12859-021-04326-x

SNPxE: SNP-environment interaction pattern identifier
Cited by: 2
Author(s): Hui‐Yi Lin, Po‐Yu Huang, Tung-Sung Tseng, Jong Y. Park
Software Mentions: 7
Published: over 2 years ago

10.3389/fcimb.2020.00131

Dysbiosis in Peripheral Blood Mononuclear Cell Virome Associated With Systemic Lupus Erythematosus
Cited by: 4
Author(s): Gangqiang Guo, Lele Ye, Xinyu Shi, Kejing Yan, Jingjing Huang, Kangming Lin, Dong Xing, Sisi Ye, Yuqing Wu, Baoqing Li, Chaosheng Chen, Xiangyang Xue, Huidi Zhang
Software Mentions: 7
Published: about 4 years ago

Projects: cran: ggpubr

Papers Mentioning ggpubr 856