Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2021.662159

https://doi.org/10.3389/fmicb.2021.662159

Cited by: 20
Author(s): Annefleur M. Koopen, Eduardo L. Almeida, Ilias Attaye, Julia J. Witjes, Elena Rampanelli, Soumia Majait, E. Marleen Kemper, Johannes H.M. Levels, Alinda W.M. Schimmel, Hilde Herrema, Torsten P. M. Scheithauer, Werner Frei, Lars Ove Dragsted, Bolette Hartmann, Jens J. Holst, Paul W. O’Toole, Albert K. Groen, Max Nieuwdorp
Published: almost 3 years ago

Software Mentions 7

bioconductor: ComplexHeatmap

Make Complex Heatmaps
Papers that mentioned: 565

bioconductor: phyloseq

Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702

cran: ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
Papers that mentioned: 809

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: ggpubr

'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856

cran: vegan

Community Ecology Package
Papers that mentioned: 6,903

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306