Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-3538-2

https://doi.org/10.1186/s12859-020-3538-2

CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments

Cited by: 39
Author(s): H. Atakan Ekiz, Christopher J. Conley, W. Zac Stephens, Ryan M. O’Connell
Published: over 4 years ago

Software Mentions 8

bioconductor: scmap
A tool for unsupervised projection of single cell RNA-seq data
Papers that mentioned: 34
bioconductor: SingleR
Reference-Based Single-Cell RNA-Seq Annotation
Papers that mentioned: 97
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: tibble
Simple Data Frames
Papers that mentioned: 47
pypi: scmap
Assigns rgb colors to points on sphere.
Papers that mentioned: 34