Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-020-00869-y

https://doi.org/10.1186/s40168-020-00869-y

Topography of the respiratory tract bacterial microbiota in cattle

Cited by: 36
Author(s): Christopher McMullen, Trevor W. Alexander, Renaud Léguillette, Matthew L. Workentine, Edouard Timsit
Published: over 4 years ago

Software Mentions 7

bioconductor: DirichletMultinomial
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Papers that mentioned: 9
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: RVAideMemoire
Testing and Plotting Procedures for Biostatistics
Papers that mentioned: 191
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562